Guide to the Human Genome
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Search of human proteins with 90193592

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]
         (230 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]          468   e-132
gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]          462   e-130
gi|11038676 CD79B antigen isoform 2 precursor [Homo sapiens]          173   1e-43
gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens]            57   1e-08
gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens]            39   0.004
gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens]             39   0.004
gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens]            39   0.004
gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens]            39   0.004
gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens]            39   0.004
gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo ...    39   0.005
gi|148005039 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncoge...    38   0.006
gi|4557695 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene...    38   0.006
gi|88979855 PREDICTED: similar to v-kit Hardy-Zuckerman 4 feline...    38   0.006
gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]           37   0.011
gi|169194776 PREDICTED: similar to hCG1742442 [Homo sapiens]           37   0.011
gi|169190399 PREDICTED: similar to hCG1742442 [Homo sapiens]           37   0.011
gi|169174843 PREDICTED: similar to hCG1742442 [Homo sapiens]           37   0.011
gi|169163335 PREDICTED: similar to hCG1742442 [Homo sapiens]           37   0.018
gi|5453613 CD7 antigen precursor [Homo sapiens]                        37   0.018
gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo ...    36   0.032
gi|68161541 carcinoembryonic antigen-related cell adhesion molec...    34   0.092
gi|19923195 carcinoembryonic antigen-related cell adhesion molec...    34   0.092
gi|11038672 CD79A antigen isoform 2 precursor [Homo sapiens]           34   0.092
gi|58331253 obscurin, cytoskeletal calmodulin and titin-interact...    33   0.16 
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac...    33   0.16 
gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...    33   0.16 
gi|169167318 PREDICTED: similar to hCG2042707 [Homo sapiens]           33   0.16 
gi|193083163 roundabout, axon guidance receptor, homolog 2 isofo...    33   0.16 
gi|61888896 roundabout, axon guidance receptor, homolog 2 isofor...    33   0.16 
gi|148743776 V-set and transmembrane domain containing 2 [Homo s...    33   0.16 

>gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]
          Length = 230

 Score =  468 bits (1204), Expect = e-132
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF 60
           MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF
Sbjct: 1   MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF 60

Query: 61  TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI 120
           TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI
Sbjct: 61  TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI 120

Query: 121 YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL 180
           YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL
Sbjct: 121 YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL 180

Query: 181 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE 230
           LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
Sbjct: 181 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE 230


>gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]
          Length = 229

 Score =  462 bits (1188), Expect = e-130
 Identities = 229/230 (99%), Positives = 229/230 (99%), Gaps = 1/230 (0%)

Query: 1   MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF 60
           MARLALSPVPSHWMVALLLLLSA EPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF
Sbjct: 1   MARLALSPVPSHWMVALLLLLSA-EPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF 59

Query: 61  TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI 120
           TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI
Sbjct: 60  TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI 119

Query: 121 YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL 180
           YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL
Sbjct: 120 YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL 179

Query: 181 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE 230
           LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
Sbjct: 180 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE 229


>gi|11038676 CD79B antigen isoform 2 precursor [Homo sapiens]
          Length = 125

 Score =  173 bits (438), Expect = 1e-43
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 145 GFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQ 204
           GFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQ
Sbjct: 40  GFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQ 99

Query: 205 TATYEDIVTLRTGEVKWSVGEHPGQE 230
           TATYEDIVTLRTGEVKWSVGEHPGQE
Sbjct: 100 TATYEDIVTLRTGEVKWSVGEHPGQE 125



 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 40/41 (97%), Positives = 40/41 (97%), Gaps = 1/41 (2%)

Query: 1  MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKG 41
          MARLALSPVPSHWMVALLLLLS AEPVPAARSEDRYRNPKG
Sbjct: 1  MARLALSPVPSHWMVALLLLLS-AEPVPAARSEDRYRNPKG 40


>gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens]
          Length = 226

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 17/182 (9%)

Query: 41  GSACSRIWQS--PRFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRME 98
           G  C  +W    P  +    G      C  NS S N +  W + +  N        G  E
Sbjct: 27  GPGCQALWMHKVPASLMVSLGEDAHFQCPHNS-SNNANVTWWRVLHGNYTWPPEFLGPGE 85

Query: 99  ESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTL 158
           +       TL IQ +     GIY C+ +  N S   Q CGT LRV        L      
Sbjct: 86  DPNG----TLIIQNVNKSHGGIYVCRVQEGNES-YQQSCGTYLRVRQPPPRPFLDMGEGT 140

Query: 159 KDGIIMIQTLLIILFIIVPIFLLLDK---DDSKAGM------EEDHTYEGLDIDQTATYE 209
           K+ II  + ++++   +VP  LLL +    + K G+      E+++ YEGL++D  + YE
Sbjct: 141 KNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGDEYEDENLYEGLNLDDCSMYE 200

Query: 210 DI 211
           DI
Sbjct: 201 DI 202


>gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens]
          Length = 246

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)

Query: 45  SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 96
           S + Q+P +I  +    V + C    +  N+   W ++      D + + L L    KG 
Sbjct: 20  SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79

Query: 97  M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 146
           +  EE + E +A         L +  ++ ED+GIYFC      + E+  G GT+L V+ F
Sbjct: 80  IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137

Query: 147 -STLAQLKQRNTLK 159
             T AQ  +++TLK
Sbjct: 138 LPTTAQPTKKSTLK 151


>gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens]
          Length = 210

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)

Query: 45  SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 96
           S + Q+P +I  +    V + C    +  N+   W ++      D + + L L    KG 
Sbjct: 20  SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79

Query: 97  M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 146
           +  EE + E +A         L +  ++ ED+GIYFC      + E+  G GT+L V+ F
Sbjct: 80  IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137

Query: 147 -STLAQLKQRNTLK 159
             T AQ  +++TLK
Sbjct: 138 LPTTAQPTKKSTLK 151


>gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens]
          Length = 243

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)

Query: 45  SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 96
           S + Q+P +I  +    V + C    +  N+   W ++      D + + L L    KG 
Sbjct: 20  SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79

Query: 97  M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 146
           +  EE + E +A         L +  ++ ED+GIYFC      + E+  G GT+L V+ F
Sbjct: 80  IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137

Query: 147 -STLAQLKQRNTLK 159
             T AQ  +++TLK
Sbjct: 138 LPTTAQPTKKSTLK 151


>gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens]
          Length = 213

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)

Query: 45  SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 96
           S + Q+P +I  +    V + C    +  N+   W ++      D + + L L    KG 
Sbjct: 20  SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79

Query: 97  M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 146
           +  EE + E +A         L +  ++ ED+GIYFC      + E+  G GT+L V+ F
Sbjct: 80  IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137

Query: 147 -STLAQLKQRNTLK 159
             T AQ  +++TLK
Sbjct: 138 LPTTAQPTKKSTLK 151


>gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens]
          Length = 221

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)

Query: 45  SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 96
           S + Q+P +I  +    V + C    +  N+   W ++      D + + L L    KG 
Sbjct: 20  SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79

Query: 97  M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 146
           +  EE + E +A         L +  ++ ED+GIYFC      + E+  G GT+L V+ F
Sbjct: 80  IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137

Query: 147 -STLAQLKQRNTLK 159
             T AQ  +++TLK
Sbjct: 138 LPTTAQPTKKSTLK 151


>gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo
           sapiens]
          Length = 761

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 11/105 (10%)

Query: 41  GSACS-RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLE 93
           G+ C  ++ QSP  ++   G  V + C  +   S N++W ++Q+  + P+ L      L+
Sbjct: 655 GARCDIQMTQSPSSLSASVGGRVTITCRASQGISNNLNW-YQQKPRKTPKLLIYAASSLQ 713

Query: 94  KG---RMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQ 135
            G   R  +S + +  TLTI  ++ ED   Y+CQQ  +N   V Q
Sbjct: 714 SGIPSRFSDSGSGTDYTLTISSLQPEDFATYYCQQSDSNPPTVLQ 758


>gi|148005039 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene
           homolog isoform 2 precursor [Homo sapiens]
          Length = 972

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 60  FTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNG 119
           FTV   C +   S +V   WK+E  +   Q K       +   E  ATLTI   R  D+G
Sbjct: 229 FTVT--CTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG 286

Query: 120 IYFCQQKCNNT 130
           ++ C    NNT
Sbjct: 287 VFMCY--ANNT 295


>gi|4557695 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene
           homolog isoform 1 precursor [Homo sapiens]
          Length = 976

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 60  FTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNG 119
           FTV   C +   S +V   WK+E  +   Q K       +   E  ATLTI   R  D+G
Sbjct: 229 FTVT--CTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG 286

Query: 120 IYFCQQKCNNT 130
           ++ C    NNT
Sbjct: 287 VFMCY--ANNT 295


>gi|88979855 PREDICTED: similar to v-kit Hardy-Zuckerman 4 feline
           sarcoma viral oncogene homolog [Homo sapiens]
          Length = 208

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 60  FTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNG 119
           FTV   C +   S +V   WK+E  +   Q K       +   E  ATLTI   R  D+G
Sbjct: 121 FTVT--CTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG 178

Query: 120 IYFCQQKCNNT 130
           ++ C    NNT
Sbjct: 179 VFMCY--ANNT 187


>gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]
          Length = 296

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 11/105 (10%)

Query: 41  GSACS-RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLE 93
           G+ C  ++ QSP  ++   G  V + C  +   S N++W ++Q+  + P+ L      L+
Sbjct: 190 GARCDIQMTQSPSSLSASVGDRVTITCRASQGISNNLNW-YQQKPGKTPKLLIYAASSLQ 248

Query: 94  KG---RMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQ 135
            G   R  +S + +  TLTI  ++ ED   Y+CQQ  + +  V Q
Sbjct: 249 SGIPSRFSDSGSGTDYTLTISSLQPEDFATYYCQQSDSTSPTVLQ 293


>gi|169194776 PREDICTED: similar to hCG1742442 [Homo sapiens]
          Length = 242

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 11/105 (10%)

Query: 41  GSACS-RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLE 93
           G+ C  ++ QSP  ++   G  V + C  +   S N++W ++Q+  + P+ L      L+
Sbjct: 136 GARCDIQMTQSPSSLSASVGDRVTITCRASQGISNNLNW-YQQKPGKTPKLLIYAASSLQ 194

Query: 94  KG---RMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQ 135
            G   R  +S + +  TLTI  ++ ED   Y+CQQ  + +  V Q
Sbjct: 195 SGIPSRFSDSGSGTDYTLTISSLQPEDFATYYCQQSDSTSPTVLQ 239


>gi|169190399 PREDICTED: similar to hCG1742442 [Homo sapiens]
          Length = 242

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 11/105 (10%)

Query: 41  GSACS-RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLE 93
           G+ C  ++ QSP  ++   G  V + C  +   S N++W ++Q+  + P+ L      L+
Sbjct: 136 GARCDIQMTQSPSSLSASVGDRVTITCRASQGISNNLNW-YQQKPGKTPKLLIYAASSLQ 194

Query: 94  KG---RMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQ 135
            G   R  +S + +  TLTI  ++ ED   Y+CQQ  + +  V Q
Sbjct: 195 SGIPSRFSDSGSGTDYTLTISSLQPEDFATYYCQQSDSTSPTVLQ 239


>gi|169174843 PREDICTED: similar to hCG1742442 [Homo sapiens]
          Length = 276

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 49  QSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLEKG---RMEE 99
           QSP  ++   G  V + C  +   S N++W ++Q+  + P+ L      L+ G   R  +
Sbjct: 179 QSPSSLSASVGGRVTITCRASQGISNNLNW-YQQKPRKTPKLLIYAASSLQSGIPSRFSD 237

Query: 100 SQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQ 135
           S + +  TLTI  ++ ED   Y+CQQ  +N   V Q
Sbjct: 238 SGSGTDYTLTISSLQPEDFATYYCQQSDSNPPTVLQ 273


>gi|169163335 PREDICTED: similar to hCG1742442 [Homo sapiens]
          Length = 295

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 11/105 (10%)

Query: 41  GSACS-RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLE 93
           G+ C  ++ QSP  ++   G  V + C  +   S N++W ++Q+  + P+ L      L+
Sbjct: 189 GARCDIQMTQSPSSLSASVGGRVTITCRASQGISNNLNW-YQQKPGKTPKLLIYAASSLQ 247

Query: 94  KG---RMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQ 135
            G   R  +S + +  TLTI  ++ ED   Y+CQQ  +    V Q
Sbjct: 248 SGIPSRFSDSGSGADYTLTISSLQPEDFAAYYCQQSDSTPPTVLQ 292


>gi|5453613 CD7 antigen precursor [Homo sapiens]
          Length = 240

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 38/156 (24%)

Query: 14  MVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGFTVKMHCYMNSASG 73
           ++ L LLL+ A  +P A            A   + QSP       G +V + C   S SG
Sbjct: 7   LLLLPLLLALARGLPGAL-----------AAQEVQQSPHCTTVPVGASVNITC---STSG 52

Query: 74  NVSWLWKQEMDENPQQL------------KLEKGRMEESQNESLATLTIQGIRFEDNGIY 121
            +  ++ +++   PQ +            +  +GR++ S ++   T+T+  ++  D G Y
Sbjct: 53  GLRGIYLRQLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTY 112

Query: 122 FCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNT 157
            CQ              TE+ V G  TL  + +  +
Sbjct: 113 TCQ------------AITEVNVYGSGTLVLVTEEQS 136


>gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo
           sapiens]
          Length = 636

 Score = 35.8 bits (81), Expect = 0.032
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 11/95 (11%)

Query: 41  GSACS-RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLE 93
           G+ C  ++ QSP  ++   G  V + C  +   S N++W ++Q+  + P+ L      L+
Sbjct: 530 GARCDIQMTQSPSSLSASVGDRVTITCRASQGISNNLNW-YQQKPGKTPKLLIYAASSLQ 588

Query: 94  KG---RMEESQNESLATLTIQGIRFEDNGIYFCQQ 125
            G   R  +S + +  TLTI+ ++ ED   Y+CQQ
Sbjct: 589 SGIPSRFSDSGSGADYTLTIRSLQPEDFATYYCQQ 623


>gi|68161541 carcinoembryonic antigen-related cell adhesion molecule
           1 isoform 2 precursor [Homo sapiens]
          Length = 464

 Score = 34.3 bits (77), Expect = 0.092
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 61  TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI 120
           +V + C  N    ++ W +K +   + +++KL +G           TL+I  ++ ED G 
Sbjct: 343 SVNLTCSTNDTGISIRWFFKNQSLPSSERMKLSQGN---------TTLSINPVKREDAGT 393

Query: 121 YFCQ 124
           Y+C+
Sbjct: 394 YWCE 397


>gi|19923195 carcinoembryonic antigen-related cell adhesion molecule
           1 isoform 1 precursor [Homo sapiens]
          Length = 526

 Score = 34.3 bits (77), Expect = 0.092
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 61  TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI 120
           +V + C  N    ++ W +K +   + +++KL +G           TL+I  ++ ED G 
Sbjct: 343 SVNLTCSTNDTGISIRWFFKNQSLPSSERMKLSQGN---------TTLSINPVKREDAGT 393

Query: 121 YFCQ 124
           Y+C+
Sbjct: 394 YWCE 397


>gi|11038672 CD79A antigen isoform 2 precursor [Homo sapiens]
          Length = 188

 Score = 34.3 bits (77), Expect = 0.092
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 9/62 (14%)

Query: 159 KDGIIMIQTLLIILFIIVPIFLLLDK---DDSKAGM------EEDHTYEGLDIDQTATYE 209
           K+ II  + ++++   +VP  LLL +    + K G+      E+++ YEGL++D  + YE
Sbjct: 103 KNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGDEYEDENLYEGLNLDDCSMYE 162

Query: 210 DI 211
           DI
Sbjct: 163 DI 164


>gi|58331253 obscurin, cytoskeletal calmodulin and titin-interacting
            RhoGEF isoform a [Homo sapiens]
          Length = 6620

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 59   GFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDN 118
            G TV + C ++ A   V W           QL++ K R +      + +LT+ G+R ED 
Sbjct: 1823 GGTVTLACELSPACAEVVWRCGNT------QLRVGK-RFQMVAEGPVRSLTVLGLRAEDA 1875

Query: 119  GIYFCQQKCNNTS 131
            G Y C+ + ++TS
Sbjct: 1876 GEYVCESRDDHTS 1888



 Score = 32.3 bits (72), Expect = 0.35
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 50  SPRFIARKRGFTVK------MHCYM-NSASGNVSWLWKQEMDENPQQLKLEKGRMEESQN 102
           +PRF+ R + F V       + C +  + +  VSW       E  QQ      R   +Q+
Sbjct: 9   APRFLTRPKAFVVSVGKDATLSCQIVGNPTPQVSW-------EKDQQPVAAGARFRLAQD 61

Query: 103 ESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTEL 141
             L  LTI  +   D+G Y C+ + N   E +   G ++
Sbjct: 62  GDLYRLTILDLALGDSGQYVCRAR-NAIGEAFAAVGLQV 99



 Score = 28.1 bits (61), Expect = 6.6
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 18/108 (16%)

Query: 35   RYRNPKGSACS-----------RIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM 83
            RY+   G ACS           R  ++ + +    G    + C ++S +  V W +   +
Sbjct: 3164 RYKCEAGGACSSSIVRVHARPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNV 3223

Query: 84   DENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTS 131
                 +  L        Q  ++  L ++ +R +D+G Y C      TS
Sbjct: 3224 LRPGDKYSLR-------QEGAMLELVVRNLRPQDSGRYSCSFGDQTTS 3264


>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
            RhoGEF isoform b [Homo sapiens]
          Length = 7968

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 59   GFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDN 118
            G TV + C ++ A   V W           QL++ K R +      + +LT+ G+R ED 
Sbjct: 1823 GGTVTLACELSPACAEVVWRCGNT------QLRVGK-RFQMVAEGPVRSLTVLGLRAEDA 1875

Query: 119  GIYFCQQKCNNTS 131
            G Y C+ + ++TS
Sbjct: 1876 GEYVCESRDDHTS 1888



 Score = 32.3 bits (72), Expect = 0.35
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 50  SPRFIARKRGFTVK------MHCYM-NSASGNVSWLWKQEMDENPQQLKLEKGRMEESQN 102
           +PRF+ R + F V       + C +  + +  VSW       E  QQ      R   +Q+
Sbjct: 9   APRFLTRPKAFVVSVGKDATLSCQIVGNPTPQVSW-------EKDQQPVAAGARFRLAQD 61

Query: 103 ESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTEL 141
             L  LTI  +   D+G Y C+ + N   E +   G ++
Sbjct: 62  GDLYRLTILDLALGDSGQYVCRAR-NAIGEAFAAVGLQV 99



 Score = 28.1 bits (61), Expect = 6.6
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 18/108 (16%)

Query: 35   RYRNPKGSACS-----------RIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM 83
            RY+   G ACS           R  ++ + +    G    + C ++S +  V W +   +
Sbjct: 3164 RYKCEAGGACSSSIVRVHARPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNV 3223

Query: 84   DENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTS 131
                 +  L        Q  ++  L ++ +R +D+G Y C      TS
Sbjct: 3224 LRPGDKYSLR-------QEGAMLELVVRNLRPQDSGRYSCSFGDQTTS 3264


>gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo
           sapiens]
          Length = 123

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 41  GSACS-RIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQL-----KLEK 94
           G+ C  ++ QSP F++   G  V + C  +    +    ++Q+  + P+ L      L+ 
Sbjct: 19  GARCDIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQS 78

Query: 95  G---RMEESQNESLATLTIQGIRFEDNGIYFCQQ 125
           G   R   S + +  TLTI  ++ ED   Y+CQQ
Sbjct: 79  GVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQ 112


>gi|169167318 PREDICTED: similar to hCG2042707 [Homo sapiens]
          Length = 142

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 41  GSACS-RIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQL-----KLEK 94
           G+ C  ++ QSP  ++   G  V + C  +    N    ++Q+  + P+ L     +LE 
Sbjct: 28  GTRCDIQMTQSPSSLSASVGDRVTITCRASQGISNSLAWYQQKPGKAPKLLLYAASRLES 87

Query: 95  G---RMEESQNESLATLTIQGIRFEDNGIYFCQQ 125
           G   R   S + +  TLTI  ++ ED   Y+CQQ
Sbjct: 88  GVPSRFSGSGSGTDYTLTISSLQPEDFATYYCQQ 121


>gi|193083163 roundabout, axon guidance receptor, homolog 2 isoform
           ROBO2a [Homo sapiens]
          Length = 1394

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 31/214 (14%)

Query: 32  SEDRYRNPKGSACSRIWQSPRFIARKR------GFTVKMHCYMNSASGNVSWLWKQEMDE 85
           +E+R    + SA   +   P+F+ R R      G TV   C     +   +  W++E  +
Sbjct: 311 AENRVGKMEASATLTVRAPPQFVVRPRDQIVAQGRTVTFPCE-TKGNPQPAVFWQKEGSQ 369

Query: 86  N---PQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELR 142
           N   P Q +    R   S       LTI  I+  D G Y CQ      S + +    +L 
Sbjct: 370 NLLFPNQPQQPNSRCSVSPT---GDLTITNIQRSDAGYYICQALTVAGSILAK---AQLE 423

Query: 143 VMGFST------LAQLKQRNTLK-DGIIMIQTL-----LIILFIIVPIFLLLDKDDSKAG 190
           V    T      + Q     TL  DG  +++       L ++  +   F    + D +A 
Sbjct: 424 VTDVLTDRPPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR-DPRAT 482

Query: 191 MEEDHTYE--GLDIDQTATYEDIVTLRTGEVKWS 222
           ++E  T +   L I  T TY  + T  +GE  WS
Sbjct: 483 IQEQGTLQIKNLRISDTGTYTCVATSSSGETSWS 516


>gi|61888896 roundabout, axon guidance receptor, homolog 2 isoform
           ROBO2b [Homo sapiens]
          Length = 1378

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 31/214 (14%)

Query: 32  SEDRYRNPKGSACSRIWQSPRFIARKR------GFTVKMHCYMNSASGNVSWLWKQEMDE 85
           +E+R    + SA   +   P+F+ R R      G TV   C     +   +  W++E  +
Sbjct: 295 AENRVGKMEASATLTVRAPPQFVVRPRDQIVAQGRTVTFPCE-TKGNPQPAVFWQKEGSQ 353

Query: 86  N---PQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELR 142
           N   P Q +    R   S       LTI  I+  D G Y CQ      S + +    +L 
Sbjct: 354 NLLFPNQPQQPNSRCSVSPT---GDLTITNIQRSDAGYYICQALTVAGSILAK---AQLE 407

Query: 143 VMGFST------LAQLKQRNTLK-DGIIMIQTL-----LIILFIIVPIFLLLDKDDSKAG 190
           V    T      + Q     TL  DG  +++       L ++  +   F    + D +A 
Sbjct: 408 VTDVLTDRPPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR-DPRAT 466

Query: 191 MEEDHTYE--GLDIDQTATYEDIVTLRTGEVKWS 222
           ++E  T +   L I  T TY  + T  +GE  WS
Sbjct: 467 IQEQGTLQIKNLRISDTGTYTCVATSSSGETSWS 500


>gi|148743776 V-set and transmembrane domain containing 2 [Homo
           sapiens]
          Length = 236

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 22/116 (18%)

Query: 42  SACSRIWQSPRFIARKRGFTVKMHCYMNSASGNVS-----WLWKQEMDENP------QQL 90
           S+ ++  + PR +    G  V+M C   S S +V      W  +   D +P       Q+
Sbjct: 24  SSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLDPGAEGAGAQV 83

Query: 91  KLEKGRMEESQNESLATLTIQG-----------IRFEDNGIYFCQQKCNNTSEVYQ 135
           +L   R  +S    ++T+ +QG           +R +D G+Y C+    N  E+ +
Sbjct: 84  ELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQE 139


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,804,025
Number of Sequences: 37866
Number of extensions: 371054
Number of successful extensions: 1464
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1351
Number of HSP's gapped (non-prelim): 205
length of query: 230
length of database: 18,247,518
effective HSP length: 99
effective length of query: 131
effective length of database: 14,498,784
effective search space: 1899340704
effective search space used: 1899340704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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