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Search of human proteins with 90193592
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]
(230 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens] 468 e-132
gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens] 462 e-130
gi|11038676 CD79B antigen isoform 2 precursor [Homo sapiens] 173 1e-43
gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens] 57 1e-08
gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens] 39 0.004
gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens] 39 0.004
gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens] 39 0.004
gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens] 39 0.004
gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens] 39 0.004
gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo ... 39 0.005
gi|148005039 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncoge... 38 0.006
gi|4557695 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene... 38 0.006
gi|88979855 PREDICTED: similar to v-kit Hardy-Zuckerman 4 feline... 38 0.006
gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens] 37 0.011
gi|169194776 PREDICTED: similar to hCG1742442 [Homo sapiens] 37 0.011
gi|169190399 PREDICTED: similar to hCG1742442 [Homo sapiens] 37 0.011
gi|169174843 PREDICTED: similar to hCG1742442 [Homo sapiens] 37 0.011
gi|169163335 PREDICTED: similar to hCG1742442 [Homo sapiens] 37 0.018
gi|5453613 CD7 antigen precursor [Homo sapiens] 37 0.018
gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo ... 36 0.032
gi|68161541 carcinoembryonic antigen-related cell adhesion molec... 34 0.092
gi|19923195 carcinoembryonic antigen-related cell adhesion molec... 34 0.092
gi|11038672 CD79A antigen isoform 2 precursor [Homo sapiens] 34 0.092
gi|58331253 obscurin, cytoskeletal calmodulin and titin-interact... 33 0.16
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 33 0.16
gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo... 33 0.16
gi|169167318 PREDICTED: similar to hCG2042707 [Homo sapiens] 33 0.16
gi|193083163 roundabout, axon guidance receptor, homolog 2 isofo... 33 0.16
gi|61888896 roundabout, axon guidance receptor, homolog 2 isofor... 33 0.16
gi|148743776 V-set and transmembrane domain containing 2 [Homo s... 33 0.16
>gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]
Length = 230
Score = 468 bits (1204), Expect = e-132
Identities = 230/230 (100%), Positives = 230/230 (100%)
Query: 1 MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF 60
MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF
Sbjct: 1 MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF 60
Query: 61 TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI 120
TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI
Sbjct: 61 TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI 120
Query: 121 YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL 180
YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL
Sbjct: 121 YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL 180
Query: 181 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE 230
LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
Sbjct: 181 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE 230
>gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]
Length = 229
Score = 462 bits (1188), Expect = e-130
Identities = 229/230 (99%), Positives = 229/230 (99%), Gaps = 1/230 (0%)
Query: 1 MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF 60
MARLALSPVPSHWMVALLLLLSA EPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF
Sbjct: 1 MARLALSPVPSHWMVALLLLLSA-EPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGF 59
Query: 61 TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI 120
TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI
Sbjct: 60 TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI 119
Query: 121 YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL 180
YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL
Sbjct: 120 YFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL 179
Query: 181 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE 230
LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
Sbjct: 180 LLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE 229
>gi|11038676 CD79B antigen isoform 2 precursor [Homo sapiens]
Length = 125
Score = 173 bits (438), Expect = 1e-43
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 145 GFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQ 204
GFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQ
Sbjct: 40 GFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQ 99
Query: 205 TATYEDIVTLRTGEVKWSVGEHPGQE 230
TATYEDIVTLRTGEVKWSVGEHPGQE
Sbjct: 100 TATYEDIVTLRTGEVKWSVGEHPGQE 125
Score = 78.6 bits (192), Expect = 4e-15
Identities = 40/41 (97%), Positives = 40/41 (97%), Gaps = 1/41 (2%)
Query: 1 MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKG 41
MARLALSPVPSHWMVALLLLLS AEPVPAARSEDRYRNPKG
Sbjct: 1 MARLALSPVPSHWMVALLLLLS-AEPVPAARSEDRYRNPKG 40
>gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens]
Length = 226
Score = 57.0 bits (136), Expect = 1e-08
Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Query: 41 GSACSRIWQS--PRFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRME 98
G C +W P + G C NS S N + W + + N G E
Sbjct: 27 GPGCQALWMHKVPASLMVSLGEDAHFQCPHNS-SNNANVTWWRVLHGNYTWPPEFLGPGE 85
Query: 99 ESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNTL 158
+ TL IQ + GIY C+ + N S Q CGT LRV L
Sbjct: 86 DPNG----TLIIQNVNKSHGGIYVCRVQEGNES-YQQSCGTYLRVRQPPPRPFLDMGEGT 140
Query: 159 KDGIIMIQTLLIILFIIVPIFLLLDK---DDSKAGM------EEDHTYEGLDIDQTATYE 209
K+ II + ++++ +VP LLL + + K G+ E+++ YEGL++D + YE
Sbjct: 141 KNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGDEYEDENLYEGLNLDDCSMYE 200
Query: 210 DI 211
DI
Sbjct: 201 DI 202
>gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens]
Length = 246
Score = 38.9 bits (89), Expect = 0.004
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 45 SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 96
S + Q+P +I + V + C + N+ W ++ D + + L L KG
Sbjct: 20 SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79
Query: 97 M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 146
+ EE + E +A L + ++ ED+GIYFC + E+ G GT+L V+ F
Sbjct: 80 IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137
Query: 147 -STLAQLKQRNTLK 159
T AQ +++TLK
Sbjct: 138 LPTTAQPTKKSTLK 151
>gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens]
Length = 210
Score = 38.9 bits (89), Expect = 0.004
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 45 SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 96
S + Q+P +I + V + C + N+ W ++ D + + L L KG
Sbjct: 20 SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79
Query: 97 M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 146
+ EE + E +A L + ++ ED+GIYFC + E+ G GT+L V+ F
Sbjct: 80 IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137
Query: 147 -STLAQLKQRNTLK 159
T AQ +++TLK
Sbjct: 138 LPTTAQPTKKSTLK 151
>gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens]
Length = 243
Score = 38.9 bits (89), Expect = 0.004
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 45 SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 96
S + Q+P +I + V + C + N+ W ++ D + + L L KG
Sbjct: 20 SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79
Query: 97 M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 146
+ EE + E +A L + ++ ED+GIYFC + E+ G GT+L V+ F
Sbjct: 80 IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137
Query: 147 -STLAQLKQRNTLK 159
T AQ +++TLK
Sbjct: 138 LPTTAQPTKKSTLK 151
>gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens]
Length = 213
Score = 38.9 bits (89), Expect = 0.004
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 45 SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 96
S + Q+P +I + V + C + N+ W ++ D + + L L KG
Sbjct: 20 SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79
Query: 97 M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 146
+ EE + E +A L + ++ ED+GIYFC + E+ G GT+L V+ F
Sbjct: 80 IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137
Query: 147 -STLAQLKQRNTLK 159
T AQ +++TLK
Sbjct: 138 LPTTAQPTKKSTLK 151
>gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens]
Length = 221
Score = 38.9 bits (89), Expect = 0.004
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 45 SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 96
S + Q+P +I + V + C + N+ W ++ D + + L L KG
Sbjct: 20 SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79
Query: 97 M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 146
+ EE + E +A L + ++ ED+GIYFC + E+ G GT+L V+ F
Sbjct: 80 IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137
Query: 147 -STLAQLKQRNTLK 159
T AQ +++TLK
Sbjct: 138 LPTTAQPTKKSTLK 151
>gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo
sapiens]
Length = 761
Score = 38.5 bits (88), Expect = 0.005
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 41 GSACS-RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLE 93
G+ C ++ QSP ++ G V + C + S N++W ++Q+ + P+ L L+
Sbjct: 655 GARCDIQMTQSPSSLSASVGGRVTITCRASQGISNNLNW-YQQKPRKTPKLLIYAASSLQ 713
Query: 94 KG---RMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQ 135
G R +S + + TLTI ++ ED Y+CQQ +N V Q
Sbjct: 714 SGIPSRFSDSGSGTDYTLTISSLQPEDFATYYCQQSDSNPPTVLQ 758
>gi|148005039 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene
homolog isoform 2 precursor [Homo sapiens]
Length = 972
Score = 38.1 bits (87), Expect = 0.006
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 60 FTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNG 119
FTV C + S +V WK+E + Q K + E ATLTI R D+G
Sbjct: 229 FTVT--CTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG 286
Query: 120 IYFCQQKCNNT 130
++ C NNT
Sbjct: 287 VFMCY--ANNT 295
>gi|4557695 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene
homolog isoform 1 precursor [Homo sapiens]
Length = 976
Score = 38.1 bits (87), Expect = 0.006
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 60 FTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNG 119
FTV C + S +V WK+E + Q K + E ATLTI R D+G
Sbjct: 229 FTVT--CTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG 286
Query: 120 IYFCQQKCNNT 130
++ C NNT
Sbjct: 287 VFMCY--ANNT 295
>gi|88979855 PREDICTED: similar to v-kit Hardy-Zuckerman 4 feline
sarcoma viral oncogene homolog [Homo sapiens]
Length = 208
Score = 38.1 bits (87), Expect = 0.006
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 60 FTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNG 119
FTV C + S +V WK+E + Q K + E ATLTI R D+G
Sbjct: 121 FTVT--CTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG 178
Query: 120 IYFCQQKCNNT 130
++ C NNT
Sbjct: 179 VFMCY--ANNT 187
>gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 296
Score = 37.4 bits (85), Expect = 0.011
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 41 GSACS-RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLE 93
G+ C ++ QSP ++ G V + C + S N++W ++Q+ + P+ L L+
Sbjct: 190 GARCDIQMTQSPSSLSASVGDRVTITCRASQGISNNLNW-YQQKPGKTPKLLIYAASSLQ 248
Query: 94 KG---RMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQ 135
G R +S + + TLTI ++ ED Y+CQQ + + V Q
Sbjct: 249 SGIPSRFSDSGSGTDYTLTISSLQPEDFATYYCQQSDSTSPTVLQ 293
>gi|169194776 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 242
Score = 37.4 bits (85), Expect = 0.011
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 41 GSACS-RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLE 93
G+ C ++ QSP ++ G V + C + S N++W ++Q+ + P+ L L+
Sbjct: 136 GARCDIQMTQSPSSLSASVGDRVTITCRASQGISNNLNW-YQQKPGKTPKLLIYAASSLQ 194
Query: 94 KG---RMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQ 135
G R +S + + TLTI ++ ED Y+CQQ + + V Q
Sbjct: 195 SGIPSRFSDSGSGTDYTLTISSLQPEDFATYYCQQSDSTSPTVLQ 239
>gi|169190399 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 242
Score = 37.4 bits (85), Expect = 0.011
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 41 GSACS-RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLE 93
G+ C ++ QSP ++ G V + C + S N++W ++Q+ + P+ L L+
Sbjct: 136 GARCDIQMTQSPSSLSASVGDRVTITCRASQGISNNLNW-YQQKPGKTPKLLIYAASSLQ 194
Query: 94 KG---RMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQ 135
G R +S + + TLTI ++ ED Y+CQQ + + V Q
Sbjct: 195 SGIPSRFSDSGSGTDYTLTISSLQPEDFATYYCQQSDSTSPTVLQ 239
>gi|169174843 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 276
Score = 37.4 bits (85), Expect = 0.011
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 49 QSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLEKG---RMEE 99
QSP ++ G V + C + S N++W ++Q+ + P+ L L+ G R +
Sbjct: 179 QSPSSLSASVGGRVTITCRASQGISNNLNW-YQQKPRKTPKLLIYAASSLQSGIPSRFSD 237
Query: 100 SQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQ 135
S + + TLTI ++ ED Y+CQQ +N V Q
Sbjct: 238 SGSGTDYTLTISSLQPEDFATYYCQQSDSNPPTVLQ 273
>gi|169163335 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 295
Score = 36.6 bits (83), Expect = 0.018
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 41 GSACS-RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLE 93
G+ C ++ QSP ++ G V + C + S N++W ++Q+ + P+ L L+
Sbjct: 189 GARCDIQMTQSPSSLSASVGGRVTITCRASQGISNNLNW-YQQKPGKTPKLLIYAASSLQ 247
Query: 94 KG---RMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQ 135
G R +S + + TLTI ++ ED Y+CQQ + V Q
Sbjct: 248 SGIPSRFSDSGSGADYTLTISSLQPEDFAAYYCQQSDSTPPTVLQ 292
>gi|5453613 CD7 antigen precursor [Homo sapiens]
Length = 240
Score = 36.6 bits (83), Expect = 0.018
Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 38/156 (24%)
Query: 14 MVALLLLLSAAEPVPAARSEDRYRNPKGSACSRIWQSPRFIARKRGFTVKMHCYMNSASG 73
++ L LLL+ A +P A A + QSP G +V + C S SG
Sbjct: 7 LLLLPLLLALARGLPGAL-----------AAQEVQQSPHCTTVPVGASVNITC---STSG 52
Query: 74 NVSWLWKQEMDENPQQL------------KLEKGRMEESQNESLATLTIQGIRFEDNGIY 121
+ ++ +++ PQ + + +GR++ S ++ T+T+ ++ D G Y
Sbjct: 53 GLRGIYLRQLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTY 112
Query: 122 FCQQKCNNTSEVYQGCGTELRVMGFSTLAQLKQRNT 157
CQ TE+ V G TL + + +
Sbjct: 113 TCQ------------AITEVNVYGSGTLVLVTEEQS 136
>gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo
sapiens]
Length = 636
Score = 35.8 bits (81), Expect = 0.032
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 41 GSACS-RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQL-----KLE 93
G+ C ++ QSP ++ G V + C + S N++W ++Q+ + P+ L L+
Sbjct: 530 GARCDIQMTQSPSSLSASVGDRVTITCRASQGISNNLNW-YQQKPGKTPKLLIYAASSLQ 588
Query: 94 KG---RMEESQNESLATLTIQGIRFEDNGIYFCQQ 125
G R +S + + TLTI+ ++ ED Y+CQQ
Sbjct: 589 SGIPSRFSDSGSGADYTLTIRSLQPEDFATYYCQQ 623
>gi|68161541 carcinoembryonic antigen-related cell adhesion molecule
1 isoform 2 precursor [Homo sapiens]
Length = 464
Score = 34.3 bits (77), Expect = 0.092
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 61 TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI 120
+V + C N ++ W +K + + +++KL +G TL+I ++ ED G
Sbjct: 343 SVNLTCSTNDTGISIRWFFKNQSLPSSERMKLSQGN---------TTLSINPVKREDAGT 393
Query: 121 YFCQ 124
Y+C+
Sbjct: 394 YWCE 397
>gi|19923195 carcinoembryonic antigen-related cell adhesion molecule
1 isoform 1 precursor [Homo sapiens]
Length = 526
Score = 34.3 bits (77), Expect = 0.092
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 61 TVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGI 120
+V + C N ++ W +K + + +++KL +G TL+I ++ ED G
Sbjct: 343 SVNLTCSTNDTGISIRWFFKNQSLPSSERMKLSQGN---------TTLSINPVKREDAGT 393
Query: 121 YFCQ 124
Y+C+
Sbjct: 394 YWCE 397
>gi|11038672 CD79A antigen isoform 2 precursor [Homo sapiens]
Length = 188
Score = 34.3 bits (77), Expect = 0.092
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 159 KDGIIMIQTLLIILFIIVPIFLLLDK---DDSKAGM------EEDHTYEGLDIDQTATYE 209
K+ II + ++++ +VP LLL + + K G+ E+++ YEGL++D + YE
Sbjct: 103 KNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGDEYEDENLYEGLNLDDCSMYE 162
Query: 210 DI 211
DI
Sbjct: 163 DI 164
>gi|58331253 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform a [Homo sapiens]
Length = 6620
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 59 GFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDN 118
G TV + C ++ A V W QL++ K R + + +LT+ G+R ED
Sbjct: 1823 GGTVTLACELSPACAEVVWRCGNT------QLRVGK-RFQMVAEGPVRSLTVLGLRAEDA 1875
Query: 119 GIYFCQQKCNNTS 131
G Y C+ + ++TS
Sbjct: 1876 GEYVCESRDDHTS 1888
Score = 32.3 bits (72), Expect = 0.35
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 50 SPRFIARKRGFTVK------MHCYM-NSASGNVSWLWKQEMDENPQQLKLEKGRMEESQN 102
+PRF+ R + F V + C + + + VSW E QQ R +Q+
Sbjct: 9 APRFLTRPKAFVVSVGKDATLSCQIVGNPTPQVSW-------EKDQQPVAAGARFRLAQD 61
Query: 103 ESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTEL 141
L LTI + D+G Y C+ + N E + G ++
Sbjct: 62 GDLYRLTILDLALGDSGQYVCRAR-NAIGEAFAAVGLQV 99
Score = 28.1 bits (61), Expect = 6.6
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 35 RYRNPKGSACS-----------RIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM 83
RY+ G ACS R ++ + + G + C ++S + V W + +
Sbjct: 3164 RYKCEAGGACSSSIVRVHARPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNV 3223
Query: 84 DENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTS 131
+ L Q ++ L ++ +R +D+G Y C TS
Sbjct: 3224 LRPGDKYSLR-------QEGAMLELVVRNLRPQDSGRYSCSFGDQTTS 3264
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 59 GFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDN 118
G TV + C ++ A V W QL++ K R + + +LT+ G+R ED
Sbjct: 1823 GGTVTLACELSPACAEVVWRCGNT------QLRVGK-RFQMVAEGPVRSLTVLGLRAEDA 1875
Query: 119 GIYFCQQKCNNTS 131
G Y C+ + ++TS
Sbjct: 1876 GEYVCESRDDHTS 1888
Score = 32.3 bits (72), Expect = 0.35
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 50 SPRFIARKRGFTVK------MHCYM-NSASGNVSWLWKQEMDENPQQLKLEKGRMEESQN 102
+PRF+ R + F V + C + + + VSW E QQ R +Q+
Sbjct: 9 APRFLTRPKAFVVSVGKDATLSCQIVGNPTPQVSW-------EKDQQPVAAGARFRLAQD 61
Query: 103 ESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTEL 141
L LTI + D+G Y C+ + N E + G ++
Sbjct: 62 GDLYRLTILDLALGDSGQYVCRAR-NAIGEAFAAVGLQV 99
Score = 28.1 bits (61), Expect = 6.6
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 35 RYRNPKGSACS-----------RIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM 83
RY+ G ACS R ++ + + G + C ++S + V W + +
Sbjct: 3164 RYKCEAGGACSSSIVRVHARPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNV 3223
Query: 84 DENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTS 131
+ L Q ++ L ++ +R +D+G Y C TS
Sbjct: 3224 LRPGDKYSLR-------QEGAMLELVVRNLRPQDSGRYSCSFGDQTTS 3264
>gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo
sapiens]
Length = 123
Score = 33.5 bits (75), Expect = 0.16
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 41 GSACS-RIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQL-----KLEK 94
G+ C ++ QSP F++ G V + C + + ++Q+ + P+ L L+
Sbjct: 19 GARCDIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQS 78
Query: 95 G---RMEESQNESLATLTIQGIRFEDNGIYFCQQ 125
G R S + + TLTI ++ ED Y+CQQ
Sbjct: 79 GVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQ 112
>gi|169167318 PREDICTED: similar to hCG2042707 [Homo sapiens]
Length = 142
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 41 GSACS-RIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQL-----KLEK 94
G+ C ++ QSP ++ G V + C + N ++Q+ + P+ L +LE
Sbjct: 28 GTRCDIQMTQSPSSLSASVGDRVTITCRASQGISNSLAWYQQKPGKAPKLLLYAASRLES 87
Query: 95 G---RMEESQNESLATLTIQGIRFEDNGIYFCQQ 125
G R S + + TLTI ++ ED Y+CQQ
Sbjct: 88 GVPSRFSGSGSGTDYTLTISSLQPEDFATYYCQQ 121
>gi|193083163 roundabout, axon guidance receptor, homolog 2 isoform
ROBO2a [Homo sapiens]
Length = 1394
Score = 33.5 bits (75), Expect = 0.16
Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 31/214 (14%)
Query: 32 SEDRYRNPKGSACSRIWQSPRFIARKR------GFTVKMHCYMNSASGNVSWLWKQEMDE 85
+E+R + SA + P+F+ R R G TV C + + W++E +
Sbjct: 311 AENRVGKMEASATLTVRAPPQFVVRPRDQIVAQGRTVTFPCE-TKGNPQPAVFWQKEGSQ 369
Query: 86 N---PQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELR 142
N P Q + R S LTI I+ D G Y CQ S + + +L
Sbjct: 370 NLLFPNQPQQPNSRCSVSPT---GDLTITNIQRSDAGYYICQALTVAGSILAK---AQLE 423
Query: 143 VMGFST------LAQLKQRNTLK-DGIIMIQTL-----LIILFIIVPIFLLLDKDDSKAG 190
V T + Q TL DG +++ L ++ + F + D +A
Sbjct: 424 VTDVLTDRPPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR-DPRAT 482
Query: 191 MEEDHTYE--GLDIDQTATYEDIVTLRTGEVKWS 222
++E T + L I T TY + T +GE WS
Sbjct: 483 IQEQGTLQIKNLRISDTGTYTCVATSSSGETSWS 516
>gi|61888896 roundabout, axon guidance receptor, homolog 2 isoform
ROBO2b [Homo sapiens]
Length = 1378
Score = 33.5 bits (75), Expect = 0.16
Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 31/214 (14%)
Query: 32 SEDRYRNPKGSACSRIWQSPRFIARKR------GFTVKMHCYMNSASGNVSWLWKQEMDE 85
+E+R + SA + P+F+ R R G TV C + + W++E +
Sbjct: 295 AENRVGKMEASATLTVRAPPQFVVRPRDQIVAQGRTVTFPCE-TKGNPQPAVFWQKEGSQ 353
Query: 86 N---PQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELR 142
N P Q + R S LTI I+ D G Y CQ S + + +L
Sbjct: 354 NLLFPNQPQQPNSRCSVSPT---GDLTITNIQRSDAGYYICQALTVAGSILAK---AQLE 407
Query: 143 VMGFST------LAQLKQRNTLK-DGIIMIQTL-----LIILFIIVPIFLLLDKDDSKAG 190
V T + Q TL DG +++ L ++ + F + D +A
Sbjct: 408 VTDVLTDRPPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR-DPRAT 466
Query: 191 MEEDHTYE--GLDIDQTATYEDIVTLRTGEVKWS 222
++E T + L I T TY + T +GE WS
Sbjct: 467 IQEQGTLQIKNLRISDTGTYTCVATSSSGETSWS 500
>gi|148743776 V-set and transmembrane domain containing 2 [Homo
sapiens]
Length = 236
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 22/116 (18%)
Query: 42 SACSRIWQSPRFIARKRGFTVKMHCYMNSASGNVS-----WLWKQEMDENP------QQL 90
S+ ++ + PR + G V+M C S S +V W + D +P Q+
Sbjct: 24 SSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLDPGAEGAGAQV 83
Query: 91 KLEKGRMEESQNESLATLTIQG-----------IRFEDNGIYFCQQKCNNTSEVYQ 135
+L R +S ++T+ +QG +R +D G+Y C+ N E+ +
Sbjct: 84 ELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQE 139
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,804,025
Number of Sequences: 37866
Number of extensions: 371054
Number of successful extensions: 1464
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1351
Number of HSP's gapped (non-prelim): 205
length of query: 230
length of database: 18,247,518
effective HSP length: 99
effective length of query: 131
effective length of database: 14,498,784
effective search space: 1899340704
effective search space used: 1899340704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.