Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: VSTM2A Sequence: fasta or formatted (236aa) NCBI GI: 148743776
Description:

V-set and transmembrane domain containing 2

Referenced in:

Additional Immunoglobulin-related Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         21           2
 C cysteine            1.3          3           1
 D aspartate           4.2         10           1
 E glutamate           5.1         12           1
 F phenylalanine       4.2         10           2
 G glycine             7.6         18           1
 H histidine           2.5          6           1
 I isoleucine          3.8          9           1
 K lysine              5.9         14           2
 L leucine             8.1         19           3
 M methionine          2.5          6           2
 N asparagine          3.4          8           1
 P proline             4.7         11           1
 Q glutamine           7.2         17           2
 R arginine            4.2         10           2
 S serine             10.2         24           2
 T threonine           3.8          9           1
 V valine              8.5         20           2
 W tryptophan          1.3          3           2
 Y tyrosine            2.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   V-set and transmembrane domain containing 2 
VSTM2B                0.244   V-set and transmembrane domain containing 2B 
VSTM2B                0.244   PREDICTED: V-set and transmembrane domain containin...
VSTM2B                0.244   PREDICTED: V-set and transmembrane domain containin...
VSTM2B                0.244   PREDICTED: V-set and transmembrane domain containin...
VSTM2L                0.210   V-set and transmembrane domain containing 2 like [Ho...
PTGFRN                0.031   prostaglandin F2 receptor negative regulator 
BSG                   0.027   basigin isoform 1 precursor 
NPTN                  0.022   neuroplastin isoform c precursor 
NPTN                  0.022   neuroplastin isoform b precursor 
IGFBPL1               0.022   insulin-like growth factor binding protein-like 1 [H...
CD79B                 0.018   CD79B antigen isoform 3 precursor 
CD79B                 0.018   CD79B antigen isoform 1 precursor 
VSIG4                 0.016   V-set and immunoglobulin domain containing 4 isofor...
VSIG4                 0.016   V-set and immunoglobulin domain containing 4 isoform ...
BTN1A1                0.016   butyrophilin, subfamily 1, member A1 
MOG                   0.016   myelin oligodendrocyte glycoprotein isoform beta4 pr...
MOG                   0.016   myelin oligodendrocyte glycoprotein isoform alpha4 p...
MOG                   0.016   myelin oligodendrocyte glycoprotein isoform beta5 pr...
MOG                   0.016   myelin oligodendrocyte glycoprotein isoform beta2 pr...
MOG                   0.016   myelin oligodendrocyte glycoprotein isoform alpha3 p...
MOG                   0.016   myelin oligodendrocyte glycoprotein isoform beta3 pr...
MOG                   0.016   myelin oligodendrocyte glycoprotein isoform beta1 pr...
MOG                   0.016   myelin oligodendrocyte glycoprotein isoform alpha2 p...
MOG                   0.016   myelin oligodendrocyte glycoprotein isoform alpha1 p...
USP51                 0.016   ubiquitin specific protease 51 
DSCAM                 0.013   Down syndrome cell adhesion molecule isoform CHD2-42...
BOD1L                 0.013   biorientation of chromosomes in cell division 1-like...
IGSF3                 0.013   immunoglobulin superfamily, member 3 isoform 1 [Homo...
IGSF3                 0.013   immunoglobulin superfamily, member 3 isoform 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press