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Search of human proteins with 90093355
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|90093355 jumonji C domain containing histone demethylase 1
homolog D [Homo sapiens]
(941 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|90093355 jumonji C domain containing histone demethylase 1 ho... 1926 0.0
gi|32698700 PHD finger protein 8 [Homo sapiens] 620 e-177
gi|117190342 PHD finger protein 2 [Homo sapiens] 593 e-169
gi|54112382 F-box and leucine-rich repeat protein 10 isoform a [... 274 2e-73
gi|54112380 F-box and leucine-rich repeat protein 10 isoform b [... 274 2e-73
gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens] 265 1e-70
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 75 4e-13
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens] 75 4e-13
gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens] 75 4e-13
gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens] 75 4e-13
gi|38788260 bromodomain PHD finger transcription factor isoform ... 67 8e-11
gi|38788274 bromodomain PHD finger transcription factor isoform ... 67 8e-11
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens] 64 7e-10
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 64 7e-10
gi|239740940 PREDICTED: hypothetical protein XP_002344108 [Homo ... 50 1e-05
gi|169211979 PREDICTED: hypothetical protein [Homo sapiens] 49 2e-05
gi|87299628 biorientation of chromosomes in cell division 1-like... 47 8e-05
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 46 1e-04
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 45 2e-04
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 45 3e-04
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 45 3e-04
gi|154426264 ubiquitin protein ligase E3 component n-recognin 7 ... 45 4e-04
gi|154426322 ubiquitin protein ligase E3 component n-recognin 7 ... 45 4e-04
gi|24497589 aristaless related homeobox [Homo sapiens] 44 5e-04
gi|7662018 PHD finger protein 3 [Homo sapiens] 44 0.001
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 43 0.002
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 43 0.002
gi|116268091 PHD finger protein 23 [Homo sapiens] 42 0.002
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 42 0.003
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 42 0.003
>gi|90093355 jumonji C domain containing histone demethylase 1
homolog D [Homo sapiens]
Length = 941
Score = 1926 bits (4990), Expect = 0.0
Identities = 941/941 (100%), Positives = 941/941 (100%)
Query: 1 MAGAAAAVAAGAAAGAAAAAVSVAAPGRASAPPPPPPVYCVCRQPYDVNRFMIECDICKD 60
MAGAAAAVAAGAAAGAAAAAVSVAAPGRASAPPPPPPVYCVCRQPYDVNRFMIECDICKD
Sbjct: 1 MAGAAAAVAAGAAAGAAAAAVSVAAPGRASAPPPPPPVYCVCRQPYDVNRFMIECDICKD 60
Query: 61 WFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKPVQAGTR 120
WFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKPVQAGTR
Sbjct: 61 WFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKPVQAGTR 120
Query: 121 TFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPSPTFSVM 180
TFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPSPTFSVM
Sbjct: 121 TFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPSPTFSVM 180
Query: 181 DVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVLNVISLEFSDTKMSELVE 240
DVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVLNVISLEFSDTKMSELVE
Sbjct: 181 DVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVLNVISLEFSDTKMSELVE 240
Query: 241 VPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKI 300
VPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKI
Sbjct: 241 VPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKI 300
Query: 301 FYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQ 360
FYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQ
Sbjct: 301 FYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQ 360
Query: 361 DCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLLETLKELRED 420
DCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLLETLKELRED
Sbjct: 361 DCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLLETLKELRED 420
Query: 421 GFQPQTYLVQGVKALHTALKLWMKKELVSEHAFEIPDNVRPGHLIKELSKVIRAIEEENG 480
GFQPQTYLVQGVKALHTALKLWMKKELVSEHAFEIPDNVRPGHLIKELSKVIRAIEEENG
Sbjct: 421 GFQPQTYLVQGVKALHTALKLWMKKELVSEHAFEIPDNVRPGHLIKELSKVIRAIEEENG 480
Query: 481 KPVKSQGIPIVCPVSRSSNEATSPYHSRRKMRKLRDHNVRTPSNLDILELHTREVLKRLE 540
KPVKSQGIPIVCPVSRSSNEATSPYHSRRKMRKLRDHNVRTPSNLDILELHTREVLKRLE
Sbjct: 481 KPVKSQGIPIVCPVSRSSNEATSPYHSRRKMRKLRDHNVRTPSNLDILELHTREVLKRLE 540
Query: 541 MCPWEEDILSSKLNGKFNKHLQPSSTVPEWRAKDNDLRLLLTNGRIIKDERQPFADQSLY 600
MCPWEEDILSSKLNGKFNKHLQPSSTVPEWRAKDNDLRLLLTNGRIIKDERQPFADQSLY
Sbjct: 541 MCPWEEDILSSKLNGKFNKHLQPSSTVPEWRAKDNDLRLLLTNGRIIKDERQPFADQSLY 600
Query: 601 TADSENEEDKRRTKKAKMKIEESSGVEGVEHEESQKPLNGFFTRVKSELRSRSSGYSDIS 660
TADSENEEDKRRTKKAKMKIEESSGVEGVEHEESQKPLNGFFTRVKSELRSRSSGYSDIS
Sbjct: 601 TADSENEEDKRRTKKAKMKIEESSGVEGVEHEESQKPLNGFFTRVKSELRSRSSGYSDIS 660
Query: 661 ESEDSGPECTALKSIFTTEESESSGDEKKQEITSNFKEESNVMRNFLQKSQKPSRSEIPI 720
ESEDSGPECTALKSIFTTEESESSGDEKKQEITSNFKEESNVMRNFLQKSQKPSRSEIPI
Sbjct: 661 ESEDSGPECTALKSIFTTEESESSGDEKKQEITSNFKEESNVMRNFLQKSQKPSRSEIPI 720
Query: 721 KRECPTSTSTEEEAIQGMLSMAGLHYSTCLQRQIQSTDCSGERNSLQDPSSCHGSNHEVR 780
KRECPTSTSTEEEAIQGMLSMAGLHYSTCLQRQIQSTDCSGERNSLQDPSSCHGSNHEVR
Sbjct: 721 KRECPTSTSTEEEAIQGMLSMAGLHYSTCLQRQIQSTDCSGERNSLQDPSSCHGSNHEVR 780
Query: 781 QLYRYDKPVECGYHVKTEDPDLRTSSWIKQFDTSRFHPQDLSRSQKCIRKEGSSEISQRV 840
QLYRYDKPVECGYHVKTEDPDLRTSSWIKQFDTSRFHPQDLSRSQKCIRKEGSSEISQRV
Sbjct: 781 QLYRYDKPVECGYHVKTEDPDLRTSSWIKQFDTSRFHPQDLSRSQKCIRKEGSSEISQRV 840
Query: 841 QSRNYVDSSGSSLQNGKYMQNSNLTSGACQISNGSLSPERPVGETSFSVPLHPTKRPASN 900
QSRNYVDSSGSSLQNGKYMQNSNLTSGACQISNGSLSPERPVGETSFSVPLHPTKRPASN
Sbjct: 841 QSRNYVDSSGSSLQNGKYMQNSNLTSGACQISNGSLSPERPVGETSFSVPLHPTKRPASN 900
Query: 901 PPPISNQATKGKRPKKGMATAKQRLGKILKLNRNGHARFFV 941
PPPISNQATKGKRPKKGMATAKQRLGKILKLNRNGHARFFV
Sbjct: 901 PPPISNQATKGKRPKKGMATAKQRLGKILKLNRNGHARFFV 941
>gi|32698700 PHD finger protein 8 [Homo sapiens]
Length = 1024
Score = 620 bits (1600), Expect = e-177
Identities = 363/825 (44%), Positives = 492/825 (59%), Gaps = 73/825 (8%)
Query: 37 PVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKK 96
PVYC+CR PYDV RFMIECD+C+DWFHGSCVGVEE A DIDLYHCPNC VLHG S+MKK
Sbjct: 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKK 64
Query: 97 RRNWHR-HDYTEIDDGSKPVQAGTRTFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHG 155
RR + HD + KPV+ G+ TF++ELRSR F S+DE+I+K G+QLT +LE++
Sbjct: 65 RRGSSKGHDTHK----GKPVKTGSPTFVRELRSRTFDSSDEVILKPTGNQLTVEFLEENS 120
Query: 156 FDVPIMVPKLDDLGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFM 215
F VPI+V K D LG+ LPSP+F+V DVE YVG DK IDVIDV RQAD KM L ++VKY+
Sbjct: 121 FSVPILVLKKDGLGMTLPSPSFTVRDVEHYVGSDKEIDVIDVTRQADCKMKLGDFVKYYY 180
Query: 216 NPNRPKVLNVISLEFSDTKMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQ 275
+ R KVLNVISLEFSDT++S LVE P I +KLSWVEN WP++ VF +P VQKYCLM V+
Sbjct: 181 SGKREKVLNVISLEFSDTRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVR 240
Query: 276 DSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKC 335
DSYTDFHIDFGGTSVWYHVL GEKIFYLI+PT+ NL +E WSSS Q+E+FFGD+VDKC
Sbjct: 241 DSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKC 300
Query: 336 YKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFK 395
YKC VKQG TLF+PTGWIHAVLT DC+AFGGNFLH+LNI MQL+ YE+EKRL T DLF+
Sbjct: 301 YKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLSTADLFR 360
Query: 396 FPFFEAICWFVAKNLLETLKELREDGFQPQTYLVQGVKALHTALKLWMKKELVSEHAFEI 455
FP FE ICW+V K++L+ + LRE+ P +YLV G KAL+ A + W +KE + +H EI
Sbjct: 361 FPNFETICWYVGKHILDIFRGLRENRRHPASYLVHGGKALNLAFRAWTRKEALPDHEDEI 420
Query: 456 PDNVRPGHLIKELSKVIRAIEE----ENGKPVKSQGIPIVCPVSRSSNEATSPYHS---- 507
P+ VR LIK+L++ IR +E+ GK G+ + P S T P HS
Sbjct: 421 PETVRTVQLIKDLAREIRLVEDIFQQNVGKTSNIFGLQRIFPAG--SIPLTRPAHSTSVS 478
Query: 508 -----------------------RRKMRKLRDHNVRTPS---NLDILELHTREVLKRLEM 541
++ RK ++ + P+ + ++++ ++ + LK
Sbjct: 479 MSRLSLPSKNGSKKKGLKPKELFKKAERKGKESSALGPAGQLSYNLMDTYSHQALKTGSF 538
Query: 542 CPWEEDILSSKLNGKFNKHLQPSSTVPEWRAKDNDLRLLLTNGR------IIKDERQPFA 595
+ +I + LN S + ++ L LL++NG + K R A
Sbjct: 539 QKAKFNITGACLNDS-----DDDSPDLDLDGNESPLALLMSNGSTKRVKSLSKSRRTKIA 593
Query: 596 ---DQSLYTADSENEEDKRRTKKAKMKIEESSGVEGVEHEESQKPLNGFFTRVKSELRSR 652
D++ A+ E++ +++I+E G E++ + F R R
Sbjct: 594 KKVDKARLMAEQVMEDEFDLDSDDELQIDERLG-----KEKATLIIRPKFPRKLP----R 644
Query: 653 SSGYSDISESEDSGPECTALKSIFTTEESESSGDEKKQEITSNFKEESNVMRNFLQKSQK 712
+ SD + + G ++ +TT+E G E K N ++ + L+ S++
Sbjct: 645 AKPCSDPNRVREPGEVEFDIEEDYTTDEDMVEGVEGK---LGNGSGAGGIL-DLLKASRQ 700
Query: 713 PSRSEIPIKRECPTSTSTEEEAIQGMLSMAGLHYSTC--LQRQIQSTDCSGERNSLQDPS 770
+ E P S ST+E AIQGML MA L S+ +Q+ G+ S S
Sbjct: 701 VGGPDYAALTEAPASPSTQE-AIQGMLCMANLQSSSSSPATSSLQAWWTGGQDRSSGSSS 759
Query: 771 SCHG--SNHEVRQLYRYDKPVECGYHVKTEDPDLRTSSWIKQFDT 813
S G SN Q +P++ + +TE + ++ + + D+
Sbjct: 760 SGLGTVSNSPASQRTPGKRPIKRPAYWRTESEEEEENASLDEQDS 804
Score = 55.5 bits (132), Expect = 2e-07
Identities = 25/31 (80%), Positives = 30/31 (96%)
Query: 905 SNQATKGKRPKKGMATAKQRLGKILKLNRNG 935
SNQA +GKRPKKG+ATAKQRLG+ILK++RNG
Sbjct: 990 SNQAGQGKRPKKGLATAKQRLGRILKIHRNG 1020
>gi|117190342 PHD finger protein 2 [Homo sapiens]
Length = 1096
Score = 593 bits (1529), Expect = e-169
Identities = 344/813 (42%), Positives = 457/813 (56%), Gaps = 103/813 (12%)
Query: 37 PVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKK 96
PVYCVCR PYDV RFMIECD CKDWFHGSCVGVEE A DID+YHCPNC HG S +KK
Sbjct: 5 PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLKK 64
Query: 97 RRNWHRHDYTEIDDGSKPVQAGTRTFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGF 156
+R WH+H + D KPVQ G++ FIKELRSR FPSA++++ ++ GSQLT Y+E+HGF
Sbjct: 65 KRTWHKHGPGQAPD-VKPVQNGSQLFIKELRSRTFPSAEDVVARVPGSQLTLGYMEEHGF 123
Query: 157 DVPIMVPKLDDLGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMN 216
PI+VPK D LGL +P+PTF V DVE YVG ++ +DV DV +Q D KM L +V Y+ +
Sbjct: 124 TEPILVPKKDGLGLAVPAPTFYVSDVENYVGPERSVDVTDVTKQKDCKMKLKEFVDYYYS 183
Query: 217 PNRPKVLNVISLEFSDTKMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQD 276
NR +VLNV +LEFSDT+MS VE PDI KKLSWVENYWPDD++ KP V KYCL+ V+D
Sbjct: 184 TNRKRVLNVTNLEFSDTRMSSFVEPPDIVKKLSWVENYWPDDALLAKPKVTKYCLICVKD 243
Query: 277 SYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCY 336
SYTDFHID GG S WYHVL GEK FYLI+P N++ YE W S+ SE+FF D+VDKCY
Sbjct: 244 SYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCY 303
Query: 337 KCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKF 396
KC+VKQG TLF+P+GWI+A LT DC+AF G+FLH+L++ MQ+R YE+E+RLK L +F
Sbjct: 304 KCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVERRLKLGSLTQF 363
Query: 397 PFFEAICWFVAKNLLETLKELREDGFQPQTYLVQGVKALHTALKLWMKKELVSEHAFEIP 456
P FE CW++ K+LLE K + G Q +LVQG K L+ A + W KK+ ++EH E+P
Sbjct: 364 PNFETACWYMGKHLLEAFKGSHKSGKQLPPHLVQGAKILNGAFRSWTKKQALAEHEDELP 423
Query: 457 DNVRPGHLIKELSKVIRAIEEENGKPVKSQGIPI-----VCPVSRSSNEATSPYHS---- 507
++ +P LIK+L+K IR + E K V+ + + VC R E SP +
Sbjct: 424 EHFKPSQLIKDLAKEIR-LSENASKAVRPEVNTVASSDEVCDGDREKEEPPSPIEATPPQ 482
Query: 508 ---------------------------------------------RRKMRKLRDHNVRTP 522
++K +K R+ T
Sbjct: 483 SLLEKVSKKKTPKTVKMPKPSKIPKPPKPPKPPRPPKTLKLKDGGKKKGKKSRESASPTI 542
Query: 523 SNLDILELHTREVLKRLEMCPWEEDILSSKLN--GKFNKHLQ------------PSSTVP 568
NLD+LE HT+E L ++E P + S L+ K H+Q S +
Sbjct: 543 PNLDLLEAHTKEALTKMEP-PKKGKATKSVLSVPNKDVVHMQNDVERLEIREQTKSKSEA 601
Query: 569 EWRAKDNDLRLLLTNGRIIKDERQPFADQSLYTADSENEEDKRRTKKAKMKIEESSGVEG 628
+W+ K++ LL K E+ P A S + +K+ ++ S GV G
Sbjct: 602 KWKYKNSKPDSLLKMEEEQKLEKSPLAGNK-DNKFSFSFSNKKLLGSKALRPPTSPGVFG 660
Query: 629 VEH---EESQKPLNGFFTRVKSE----------LRSRSSGYSDISESEDS----GPECTA 671
E+ KP+ + V + R +++ D+S D T
Sbjct: 661 ALQNFKEDKPKPVRDEYEYVSDDGELKIDEFPIRRKKNAPKRDLSFLLDKKAVLPTPVTK 720
Query: 672 LKSIFTTEESESSGDEKKQEITSNFKEESNV------------MRNFLQKSQKPSRSEIP 719
K +S+ S DE I ++ K N + + LQ S++ E
Sbjct: 721 PKLDSAAYKSDDSSDEGSLHIDTDTKPGRNARVKKESGSSAAGILDLLQASEEVGALEYN 780
Query: 720 IKRECPTSTSTEEEAIQGMLSMAGLHYS-TCLQ 751
+ P S ST +EAIQGMLSMA L S +CLQ
Sbjct: 781 PSSQPPASPST-QEAIQGMLSMANLQASDSCLQ 812
Score = 58.5 bits (140), Expect = 3e-08
Identities = 32/52 (61%), Positives = 37/52 (71%), Gaps = 4/52 (7%)
Query: 888 SVPLHP----TKRPASNPPPISNQATKGKRPKKGMATAKQRLGKILKLNRNG 935
S P+ P T+R S P +N A KGKR KKGMATAKQRLGKILK++RNG
Sbjct: 1041 SQPMAPGVFLTQRRPSASSPNNNTAAKGKRTKKGMATAKQRLGKILKIHRNG 1092
>gi|54112382 F-box and leucine-rich repeat protein 10 isoform a
[Homo sapiens]
Length = 1336
Score = 274 bits (701), Expect = 2e-73
Identities = 134/320 (41%), Positives = 198/320 (61%), Gaps = 17/320 (5%)
Query: 102 RHDYTE-IDDGSKPVQAGTRTFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGFDVPI 160
R+D E + D + V + ++LRS+++ + + M G Y+++ VP+
Sbjct: 49 RYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQG--DFVHAMEGKDFNYEYVQREALRVPL 106
Query: 161 MVPKLDDLGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPN-- 218
+ + D LG+++P P F+V DV+ VG +++DV+DV Q ++M++ +V+Y+ P
Sbjct: 107 IFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEMSMSQFVRYYETPEAQ 166
Query: 219 RPKVLNVISLEFSDTKMSELVEVPDIAKKLSWVENYWPDD------------SVFPKPFV 266
R K+ NVISLEFS TK+ LV+ P + + WV+N WP + P V
Sbjct: 167 RDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNAIAEMKYPKV 226
Query: 267 QKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEV 326
+KYCLM V+ +TDFHIDFGGTSVWYHV G KIF+LI PT NLA YE W S QS++
Sbjct: 227 KKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDI 286
Query: 327 FFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEK 386
F GD+V++C + +KQG+T F+P+GWIHAV T D + FGGN LH+ N+ MQLR YE+E
Sbjct: 287 FLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIED 346
Query: 387 RLKTPDLFKFPFFEAICWFV 406
R + F++PF+ +CW+V
Sbjct: 347 RTRVQPKFRYPFYYEMCWYV 366
Score = 32.3 bits (72), Expect = 2.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 49 NRFMIECDICKDWFHGSCVGVEEHHAVDID----LYHCPNCAVLHGSSLMKKRR 98
N ++EC IC + H C+ ++E V D + CP C H K++R
Sbjct: 682 NLMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCN--HAGKTGKQKR 733
>gi|54112380 F-box and leucine-rich repeat protein 10 isoform b
[Homo sapiens]
Length = 1265
Score = 274 bits (701), Expect = 2e-73
Identities = 134/320 (41%), Positives = 198/320 (61%), Gaps = 17/320 (5%)
Query: 102 RHDYTE-IDDGSKPVQAGTRTFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGFDVPI 160
R+D E + D + V + ++LRS+++ + + M G Y+++ VP+
Sbjct: 18 RYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQG--DFVHAMEGKDFNYEYVQREALRVPL 75
Query: 161 MVPKLDDLGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPN-- 218
+ + D LG+++P P F+V DV+ VG +++DV+DV Q ++M++ +V+Y+ P
Sbjct: 76 IFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEMSMSQFVRYYETPEAQ 135
Query: 219 RPKVLNVISLEFSDTKMSELVEVPDIAKKLSWVENYWPDD------------SVFPKPFV 266
R K+ NVISLEFS TK+ LV+ P + + WV+N WP + P V
Sbjct: 136 RDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNAIAEMKYPKV 195
Query: 267 QKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEV 326
+KYCLM V+ +TDFHIDFGGTSVWYHV G KIF+LI PT NLA YE W S QS++
Sbjct: 196 KKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDI 255
Query: 327 FFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEK 386
F GD+V++C + +KQG+T F+P+GWIHAV T D + FGGN LH+ N+ MQLR YE+E
Sbjct: 256 FLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIED 315
Query: 387 RLKTPDLFKFPFFEAICWFV 406
R + F++PF+ +CW+V
Sbjct: 316 RTRVQPKFRYPFYYEMCWYV 335
Score = 32.3 bits (72), Expect = 2.1
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 49 NRFMIECDICKDWFHGSCVGVEEHHAVDID----LYHCPNCAVLHGSSLMKKRR 98
N ++EC IC + H C+ ++E V D + CP C H K++R
Sbjct: 651 NLMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCN--HAGKTGKQKR 702
>gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens]
Length = 1162
Score = 265 bits (678), Expect = 1e-70
Identities = 131/315 (41%), Positives = 186/315 (59%), Gaps = 19/315 (6%)
Query: 109 DDG-SKPVQAGTRTFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLDD 167
DDG S G RTF E + + M G Y+++ G P++ D
Sbjct: 24 DDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDG 83
Query: 168 LGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPN--RPKVLNV 225
LG+++P P F+V DV+ VG +++DV+DV Q +MT+ + +Y+ P R K+ NV
Sbjct: 84 LGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNV 143
Query: 226 ISLEFSDTKMSELVEVPDIAKKLSWVENYWPD--------------DSVFPKPFVQKYCL 271
ISLEFS T++ +V+ P + WV+N WP + +PK VQKYCL
Sbjct: 144 ISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPK--VQKYCL 201
Query: 272 MGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDK 331
M V+ YTDFH+DFGGTSVWYH+ G K+F+LI PT NL YE+W S Q ++F GD+
Sbjct: 202 MSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGKQGDIFLGDR 261
Query: 332 VDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTP 391
V C + +KQG+T +P+GWIHAV T D + FGGNFLH+ NI MQL+ Y +E R + P
Sbjct: 262 VSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVP 321
Query: 392 DLFKFPFFEAICWFV 406
+ F++PF+ +CW+V
Sbjct: 322 NKFRYPFYYEMCWYV 336
Score = 30.4 bits (67), Expect = 8.1
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 31 APPPPPPVYC-VC------RQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDL---Y 80
AP P V C +C + D + ++EC IC + H C+ ++ ++ +L +
Sbjct: 611 APRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCW 670
Query: 81 HCPNCAVLHGSSLMKKRR 98
CP C S +KR+
Sbjct: 671 ECPKCYQEDSSEKAQKRK 688
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 74.7 bits (182), Expect = 4e-13
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 21/121 (17%)
Query: 15 GAAAAAVSVAAPGRASAPPP------PPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVG 68
G AA + PG P P P +YC+CRQP++ NRFMI CD C++WFHG CVG
Sbjct: 240 GKAAQDIKDEEPGDLGRPKPECEGYDPNALYCICRQPHN-NRFMICCDRCEEWFHGDCVG 298
Query: 69 VEEHHAVDIDL----YHCPNCAVL------HGSSLMKKRRNWHRHDYTEIDDGSKPVQAG 118
+ E ++ Y CPNC +L H + ++ W D DG+ G
Sbjct: 299 ISEARGRLLERNGEDYICPNCTILQVQDETHSETADQQEAKWRPGD----ADGTDCTSIG 354
Query: 119 T 119
T
Sbjct: 355 T 355
>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
Length = 1189
Score = 74.7 bits (182), Expect = 4e-13
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 21/121 (17%)
Query: 15 GAAAAAVSVAAPGRASAPPP------PPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVG 68
G AA + PG P P P +YC+CRQP++ NRFMI CD C++WFHG CVG
Sbjct: 240 GKAAQDIKDEEPGDLGRPKPECEGYDPNALYCICRQPHN-NRFMICCDRCEEWFHGDCVG 298
Query: 69 VEEHHAVDIDL----YHCPNCAVL------HGSSLMKKRRNWHRHDYTEIDDGSKPVQAG 118
+ E ++ Y CPNC +L H + ++ W D DG+ G
Sbjct: 299 ISEARGRLLERNGEDYICPNCTILQVQDETHSETADQQEAKWRPGD----ADGTDCTSIG 354
Query: 119 T 119
T
Sbjct: 355 T 355
>gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens]
Length = 562
Score = 74.7 bits (182), Expect = 4e-13
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 21/121 (17%)
Query: 15 GAAAAAVSVAAPGRASAPPP------PPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVG 68
G AA + PG P P P +YC+CRQP++ NRFMI CD C++WFHG CVG
Sbjct: 240 GKAAQDIKDEEPGDLGRPKPECEGYDPNALYCICRQPHN-NRFMICCDRCEEWFHGDCVG 298
Query: 69 VEEHHAVDIDL----YHCPNCAVL------HGSSLMKKRRNWHRHDYTEIDDGSKPVQAG 118
+ E ++ Y CPNC +L H + ++ W D DG+ G
Sbjct: 299 ISEARGRLLERNGEDYICPNCTILQVQDETHSETADQQEAKWRPGD----ADGTDCTSIG 354
Query: 119 T 119
T
Sbjct: 355 T 355
>gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens]
Length = 562
Score = 74.7 bits (182), Expect = 4e-13
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 21/121 (17%)
Query: 15 GAAAAAVSVAAPGRASAPPP------PPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVG 68
G AA + PG P P P +YC+CRQP++ NRFMI CD C++WFHG CVG
Sbjct: 240 GKAAQDIKDEEPGDLGRPKPECEGYDPNALYCICRQPHN-NRFMICCDRCEEWFHGDCVG 298
Query: 69 VEEHHAVDIDL----YHCPNCAVL------HGSSLMKKRRNWHRHDYTEIDDGSKPVQAG 118
+ E ++ Y CPNC +L H + ++ W D DG+ G
Sbjct: 299 ISEARGRLLERNGEDYICPNCTILQVQDETHSETADQQEAKWRPGD----ADGTDCTSIG 354
Query: 119 T 119
T
Sbjct: 355 T 355
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 67.0 bits (162), Expect = 8e-11
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85
+YC+C+ PYD ++F I CD C++W+HG CVG+ + A ID Y CP C
Sbjct: 2725 LYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQC 2772
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 67.0 bits (162), Expect = 8e-11
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85
+YC+C+ PYD ++F I CD C++W+HG CVG+ + A ID Y CP C
Sbjct: 2742 LYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQC 2789
>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
Length = 660
Score = 63.9 bits (154), Expect = 7e-10
Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 27 GRASAPPPPP-------------PVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHH 73
G S P PP P+YC+CR+P D+N FMI CD C +WFHG C+ + E
Sbjct: 3 GDGSDPEPPDAGEDSKSENGENAPIYCICRKP-DINCFMIGCDNCNEWFHGDCIRITEKM 61
Query: 74 AVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKPVQAG 118
A I ++C C ++ R R D S+P G
Sbjct: 62 AKAIREWYCRECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEG 106
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 63.9 bits (154), Expect = 7e-10
Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 27 GRASAPPPPP-------------PVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHH 73
G S P PP P+YC+CR+P D+N FMI CD C +WFHG C+ + E
Sbjct: 3 GDGSDPEPPDAGEDSKSENGENAPIYCICRKP-DINCFMIGCDNCNEWFHGDCIRITEKM 61
Query: 74 AVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKPVQAG 118
A I ++C C ++ R R D S+P G
Sbjct: 62 AKAIREWYCRECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEG 106
>gi|239740940 PREDICTED: hypothetical protein XP_002344108 [Homo
sapiens]
Length = 168
Score = 49.7 bits (117), Expect = 1e-05
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 47 DVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85
+ +RF I CD+C +W++G CVG+ E A +D+Y C +C
Sbjct: 26 NTSRFYIGCDLCTNWYYGECVGIAEKEAKKMDVYICNDC 64
>gi|169211979 PREDICTED: hypothetical protein [Homo sapiens]
Length = 168
Score = 48.9 bits (115), Expect = 2e-05
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 50 RFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85
RF I CD+C +W++G CVG+ E A +D+Y C +C
Sbjct: 29 RFYIGCDLCTNWYYGECVGIAEKEAKKMDVYICNDC 64
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 47.0 bits (110), Expect = 8e-05
Identities = 61/304 (20%), Positives = 119/304 (39%), Gaps = 13/304 (4%)
Query: 500 EATSPYHSRRKMRKLRDHNVRTPSNLDILELHTREVLKRLEMCPWEEDILSSKLNGKFNK 559
E T ++ + R D + +L+ +EVLK ++ E+ + SK K ++
Sbjct: 524 EKTKSSKTKGQGRSSVDLEESSTKSLEPKAARIKEVLKERKVL--EKKVALSKKRKKDSR 581
Query: 560 HLQPSSTVPEWRAKDNDLRLLLTNGRIIKDERQPFADQSLYTADSENEEDKRRTKKAKMK 619
+++ +S + +D+ L T+ K++ + A SE + RR ++
Sbjct: 582 NVEENSKKKQQYEEDSK-ETLKTSEHCEKEKISSSKELKHVHAKSEPSKPARRLSESLHV 640
Query: 620 IEESSGVEGVEHEESQKPLNGFFTRVKSELRSRSSGYSDISESEDSGPECTALKSIFTTE 679
++E+ +E E ++ E + SE E KS E
Sbjct: 641 VDENKNESKLEREHKRRTSTPVIMEGVQEETDTRDVKRQVERSEICTEEPQKQKSTLKNE 700
Query: 680 ESESSGDEKKQEITSNFKEESNVMRNFLQKSQKPSRSEIPIKR----ECPTSTSTEEEAI 735
+ D + + S K+E + ++ + PS ++ +K +C T E E
Sbjct: 701 KHLKKDDSETPHLKSLLKKEVKSSKEKPEREKTPSEDKLSVKHKYKGDCMHKTGDETELH 760
Query: 736 QGMLSMAGLHYSTCLQRQIQSTDCSGERNSLQDPSSCHGSNHEVRQLYRYDKPVECGYHV 795
S GL +Q+Q Q T S + + + S H + ++ L + KPV Y +
Sbjct: 761 S---SEKGLKVEENIQKQSQQTKLSSDDKT--ERKSKHRNERKLSVLGKDGKPVS-EYII 814
Query: 796 KTED 799
KT++
Sbjct: 815 KTDE 818
Score = 33.9 bits (76), Expect = 0.73
Identities = 57/327 (17%), Positives = 117/327 (35%), Gaps = 31/327 (9%)
Query: 584 GRIIKDERQPFADQSLYTADSENEEDKRRTKKAKMKIEESSGV----------EGVEHEE 633
G +++ Q + Q+ ++D + E + + K+ + G E V E
Sbjct: 765 GLKVEENIQKQSQQTKLSSDDKTERKSKHRNERKLSVLGKDGKPVSEYIIKTDENVRKEN 824
Query: 634 SQKPLNGFFTRVKSELRSRSSGYSDISESEDSGPECTALKSIFTTEESESSGDEKKQEIT 693
++K + K+E +SR S S I + + + SE D +
Sbjct: 825 NKKERRLSAEKTKAEHKSRRSSDSKIQKDSLGSKQHGITLQRRSESYSEDKCDMDSTNMD 884
Query: 694 SNFKEESNVMRNFLQKSQKPSRSEIPIKRECPTSTSTEEEAIQGMLSMAGLHYSTC---- 749
SN K E V+ ++++ ++ +K + T + + ++ L +T
Sbjct: 885 SNLKPEE-VVHKEKRRTKSLLEEKLVLKSKSKTQ-GKQVKVVETELQEGATKQATTPKPD 942
Query: 750 LQRQIQSTDCSGERNSLQDPS------------SCHGSNHEVRQLYRYDKPVECGYHVKT 797
++ + D +R S + + S H ++ + +
Sbjct: 943 KEKNTEENDSEKQRKSKVEDKPFEETGVEPVLETASSSAHSTQKDSSHRAKLPLAKEKYK 1002
Query: 798 EDPDLRTSSWIKQFDTSRFHPQDLSRSQKCIRKEGSSEISQRVQSRNYVDSSGSSLQNGK 857
D D TS+ +++ + + L S K I+K+ ++ + VDSS +
Sbjct: 1003 SDKD-STSTRLERKLSDGHKSRSLKHSSKDIKKKDENKSDDK--DGKEVDSSHEKARGNS 1059
Query: 858 YMQNSNLTSGACQISNGSLSPERPVGE 884
+ L+ C+ GSLS E GE
Sbjct: 1060 SLMEKKLSRRLCENRRGSLSQEMAKGE 1086
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 46.2 bits (108), Expect = 1e-04
Identities = 71/294 (24%), Positives = 115/294 (39%), Gaps = 19/294 (6%)
Query: 583 NGRIIK-DERQPFADQSLYTADSENEEDKRRTKKAKMKIEESSGVEGVEHEESQ-KPLNG 640
NGR I+ E +P + + + S + R + K SG H +S+ + +G
Sbjct: 166 NGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSG 225
Query: 641 FFTRVKSELRSRSSGYSDISESEDSGPECTALKSIFTTEESESSGDEKKQEITSNFKEES 700
+R KS RS+S S +S E + +S + S D+ +++I +N
Sbjct: 226 SRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNN----D 281
Query: 701 NVMRNFLQKSQKPSRSEIPIKRECPTSTSTEEEAIQGMLSMAGLHYSTCLQRQIQSTDCS 760
NV + KS+ PSR + K + EE +G +S + Q + +S
Sbjct: 282 NVGK---PKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKG 338
Query: 761 GERNSLQDPSSCHG-------SNHEVRQLYRY-DKPVECGYHVKTEDPDLRTSSWIKQFD 812
G R+ + S S E R R K D +S K+ D
Sbjct: 339 GSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKED 398
Query: 813 TSRFHPQDLSRSQKCIRKEGSSEISQRVQSRNYVDSSGSSLQNGKYMQNSNLTS 866
T R + SRS R+ SE SQR + R +++G++ Q + SN S
Sbjct: 399 TDRSQSRSPSRSVSKEREHAKSESSQR-EGRGESENAGTN-QETRSRSRSNSKS 450
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 45.4 bits (106), Expect = 2e-04
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 16/112 (14%)
Query: 1 MAGAAAAVAAGAAAGAAAAAVSVAAPGRASAPPPPPPVYCV-------------CRQPYD 47
+A AAA A + G AA+ S AP R S Y + C +P D
Sbjct: 818 LAQAAAGPALLPSPGPAASGASAKAPVR-SVVTETVSTYVIRDEWGNQIWICPGCNKPDD 876
Query: 48 VNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRN 99
+ MI CD C DW+H CVG+ ++ + CP CA KKR++
Sbjct: 877 GSP-MIGCDDCDDWYHWPCVGIMTAPPEEMQ-WFCPKCANKKKDKKHKKRKH 926
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 45.1 bits (105), Expect = 3e-04
Identities = 15/29 (51%), Positives = 23/29 (79%), Gaps = 2/29 (6%)
Query: 39 YCVCRQPYDVNRFMIECDICKDWFHGSCV 67
+C+CR+ + FM++C++CKDWFH SCV
Sbjct: 1163 FCICRKT--ASGFMLQCELCKDWFHNSCV 1189
Score = 37.4 bits (85), Expect = 0.066
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 42 CRQPYDVNRFMIECDI-CKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90
C++P ++CD C +WFH CVGV A + D Y C NCA G
Sbjct: 1615 CQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENED-YICINCAKKQG 1663
>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
sapiens]
Length = 1641
Score = 45.1 bits (105), Expect = 3e-04
Identities = 15/29 (51%), Positives = 23/29 (79%), Gaps = 2/29 (6%)
Query: 39 YCVCRQPYDVNRFMIECDICKDWFHGSCV 67
+C+CR+ + FM++C++CKDWFH SCV
Sbjct: 1163 FCICRKT--ASGFMLQCELCKDWFHNSCV 1189
>gi|154426264 ubiquitin protein ligase E3 component n-recognin 7
(putative) isoform 3 [Homo sapiens]
Length = 349
Score = 44.7 bits (104), Expect = 4e-04
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 38 VYCVCRQPY-----DVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85
+YC+C++PY ++ MI+C +C+DWFHG +G + D C C
Sbjct: 57 LYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEMVCQAC 109
>gi|154426322 ubiquitin protein ligase E3 component n-recognin 7
(putative) isoform 2 [Homo sapiens]
Length = 425
Score = 44.7 bits (104), Expect = 4e-04
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 38 VYCVCRQPY-----DVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85
+YC+C++PY ++ MI+C +C+DWFHG +G + D C C
Sbjct: 133 LYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEMVCQAC 185
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 44.3 bits (103), Expect = 5e-04
Identities = 23/33 (69%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 5 AAAVAAGAAAGAAAAAVSVAAPGRASAPPPPPP 37
AAA AA AAA AAAAA + A P R APPPPPP
Sbjct: 100 AAAAAAAAAAAAAAAATATAGP-RGEAPPPPPP 131
>gi|7662018 PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 43.5 bits (101), Expect = 0.001
Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 42 CRQPYDVNRFMIECDICKDWFHGSCVGV 69
C++P+ NRFM+ C C DWFHG CVG+
Sbjct: 723 CKKPHG-NRFMVGCGRCDDWFHGDCVGL 749
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 42.7 bits (99), Expect = 0.002
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 22/172 (12%)
Query: 559 KHLQPSSTVPEWRAKDNDLRLLLTNGRIIKDERQPFADQSLYTADSENEEDKRRTKKAKM 618
K ++ + E +D DL + ++ +DE + AD S Y D+ EED + K +
Sbjct: 146 KEVEDKESEGEEEDEDEDL----SKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRR 201
Query: 619 KIEESSGVEGVEHEESQKPLNGFFTRVKSELRSRSSGYSDISESEDSGPECTALKSIFTT 678
+S S P + +R +S RSRSS S S S S +
Sbjct: 202 SRSKSRSSHSRSSSRSSSPSS---SRSRSRSRSRSSSSSQ-SRSRSS-----------SR 246
Query: 679 EESESSGDEKKQEITSNFKEESNVMRNFLQKSQKPSRSEIPIKRECPTSTST 730
E S S G + + S+ S R++ S P R+ KR S+S+
Sbjct: 247 ERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNR---KRSRSRSSSS 295
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 42.7 bits (99), Expect = 0.002
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 22/172 (12%)
Query: 559 KHLQPSSTVPEWRAKDNDLRLLLTNGRIIKDERQPFADQSLYTADSENEEDKRRTKKAKM 618
K ++ + E +D DL + ++ +DE + AD S Y D+ EED + K +
Sbjct: 146 KEVEDKESEGEEEDEDEDL----SKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRR 201
Query: 619 KIEESSGVEGVEHEESQKPLNGFFTRVKSELRSRSSGYSDISESEDSGPECTALKSIFTT 678
+S S P + +R +S RSRSS S S S S +
Sbjct: 202 SRSKSRSSHSRSSSRSSSPSS---SRSRSRSRSRSSSSSQ-SRSRSS-----------SR 246
Query: 679 EESESSGDEKKQEITSNFKEESNVMRNFLQKSQKPSRSEIPIKRECPTSTST 730
E S S G + + S+ S R++ S P R+ KR S+S+
Sbjct: 247 ERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNR---KRSRSRSSSS 295
>gi|116268091 PHD finger protein 23 [Homo sapiens]
Length = 403
Score = 42.4 bits (98), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88
+ C CR+P+ R MIEC +C W H SC +++ + D ++C C L
Sbjct: 340 ITCYCRKPF-AGRPMIECSLCGTWIHLSCAKIKKTNVP--DFFYCQKCKEL 387
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 42.0 bits (97), Expect = 0.003
Identities = 22/36 (61%), Positives = 24/36 (66%)
Query: 2 AGAAAAVAAGAAAGAAAAAVSVAAPGRASAPPPPPP 37
A AAAAVAA A AAA+ V AA + APPPPPP
Sbjct: 103 AAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPP 138
Score = 40.0 bits (92), Expect = 0.010
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 14/52 (26%)
Query: 1 MAGAAAAVAAGAAAGAAAAAVSVAAPGRASA--------------PPPPPPV 38
+A A + AA AAA AAAAAV+ A P A+A PPPPPPV
Sbjct: 89 LAAAQESAAAAAAAAAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPPV 140
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 42.0 bits (97), Expect = 0.003
Identities = 22/36 (61%), Positives = 24/36 (66%)
Query: 2 AGAAAAVAAGAAAGAAAAAVSVAAPGRASAPPPPPP 37
A AAAAVAA A AAA+ V AA + APPPPPP
Sbjct: 103 AAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPP 138
Score = 40.0 bits (92), Expect = 0.010
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 14/52 (26%)
Query: 1 MAGAAAAVAAGAAAGAAAAAVSVAAPGRASA--------------PPPPPPV 38
+A A + AA AAA AAAAAV+ A P A+A PPPPPPV
Sbjct: 89 LAAAQESAAAAAAAAAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPPV 140
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,654,822
Number of Sequences: 37866
Number of extensions: 1883622
Number of successful extensions: 15841
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 13938
Number of HSP's gapped (non-prelim): 1627
length of query: 941
length of database: 18,247,518
effective HSP length: 112
effective length of query: 829
effective length of database: 14,006,526
effective search space: 11611410054
effective search space used: 11611410054
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.