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Search of human proteins with 89886350
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89886350 Rho GTPase activating protein 11B [Homo sapiens]
(267 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89886350 Rho GTPase activating protein 11B [Homo sapiens] 542 e-154
gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo sap... 438 e-123
gi|40788018 Rho GTPase activating protein 11A isoform 2 [Homo sa... 438 e-123
gi|112363100 SLIT-ROBO Rho GTPase activating protein 2 isoform a... 88 7e-18
gi|112363096 SLIT-ROBO Rho GTPase activating protein 2 isoform b... 88 7e-18
gi|91208437 GEM interacting protein [Homo sapiens] 84 1e-16
gi|156071465 Rho GTPase activating protein 4 [Homo sapiens] 84 2e-16
gi|34013590 Rho GTPase activating protein 2 [Homo sapiens] 84 2e-16
gi|7382480 Rho GTPase activating protein 6 isoform 4 [Homo sapiens] 80 2e-15
gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo sapi... 80 2e-15
gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo sapi... 80 2e-15
gi|44917604 SLIT-ROBO Rho GTPase activating protein 1 [Homo sapi... 80 2e-15
gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens] 79 4e-15
gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens] 79 4e-15
gi|24307967 SLIT-ROBO Rho GTPase activating protein 3 isoform a ... 79 5e-15
gi|4757766 Rho GTPase activating protein 1 [Homo sapiens] 78 9e-15
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 78 9e-15
gi|75677374 SLIT-ROBO Rho GTPase activating protein 3 isoform b ... 76 3e-14
gi|226423858 PRR5-ARHGAP8 fusion protein [Homo sapiens] 74 1e-13
gi|66346660 Rho GTPase activating protein 8 isoform 2 [Homo sapi... 74 1e-13
gi|66346662 Rho GTPase activating protein 8 isoform 1 [Homo sapi... 74 1e-13
gi|39932589 Rho GTPase activating protein 18 [Homo sapiens] 74 1e-13
gi|111154090 Rho GTPase activating protein 24 isoform 3 [Homo sa... 73 3e-13
gi|111154092 Rho GTPase activating protein 24 isoform 1 [Homo sa... 73 3e-13
gi|54860079 nadrin isoform 1 [Homo sapiens] 72 4e-13
gi|54860105 nadrin isoform 2 [Homo sapiens] 72 4e-13
gi|239757488 PREDICTED: chromosome 20 open reading frame 95 [Hom... 72 5e-13
gi|239752003 PREDICTED: chromosome 20 open reading frame 95 [Hom... 72 5e-13
gi|239746488 PREDICTED: Rho GTPase-activating protein 18-like [H... 72 5e-13
gi|51479148 Rho GTPase activating protein 20 [Homo sapiens] 72 7e-13
>gi|89886350 Rho GTPase activating protein 11B [Homo sapiens]
Length = 267
Score = 542 bits (1396), Expect = e-154
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 MWDQRLVKLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP 60
MWDQRLVKLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
Sbjct: 1 MWDQRLVKLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP 60
Query: 61 EYGHIPSFLVDACTSLEEHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL 120
EYGHIPSFLVDACTSLEEHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
Sbjct: 61 EYGHIPSFLVDACTSLEEHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL 120
Query: 121 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLADHTVHVLRYFFNFLRN 180
LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLADHTVHVLRYFFNFLRN
Sbjct: 121 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLADHTVHVLRYFFNFLRN 180
Query: 181 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKKGVYQTLSWKRYQPCWVLMVS 240
VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKKGVYQTLSWKRYQPCWVLMVS
Sbjct: 181 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKKGVYQTLSWKRYQPCWVLMVS 240
Query: 241 VLLHHWKALKKVNMKLLVNIREREDNV 267
VLLHHWKALKKVNMKLLVNIREREDNV
Sbjct: 241 VLLHHWKALKKVNMKLLVNIREREDNV 267
>gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo
sapiens]
Length = 1023
Score = 438 bits (1126), Expect = e-123
Identities = 220/231 (95%), Positives = 222/231 (96%), Gaps = 5/231 (2%)
Query: 1 MWDQRLVKLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP 60
MWDQRLV+LALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
Sbjct: 1 MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP 60
Query: 61 EYGHIPSFLVDACTSLEEHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL 120
EYGHIPSFLVDACTSLE+HIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
Sbjct: 61 EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL 120
Query: 121 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLADHTVHVLRYFFNFLRN 180
LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKA LLLSCLLADHTVHVLRYFFNFLRN
Sbjct: 121 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRN 180
Query: 181 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKK-----GVYQTL 226
VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSN EKK V QTL
Sbjct: 181 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTL 231
>gi|40788018 Rho GTPase activating protein 11A isoform 2 [Homo
sapiens]
Length = 501
Score = 438 bits (1126), Expect = e-123
Identities = 220/231 (95%), Positives = 222/231 (96%), Gaps = 5/231 (2%)
Query: 1 MWDQRLVKLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP 60
MWDQRLV+LALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
Sbjct: 1 MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP 60
Query: 61 EYGHIPSFLVDACTSLEEHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL 120
EYGHIPSFLVDACTSLE+HIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
Sbjct: 61 EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL 120
Query: 121 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLADHTVHVLRYFFNFLRN 180
LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKA LLLSCLLADHTVHVLRYFFNFLRN
Sbjct: 121 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRN 180
Query: 181 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKK-----GVYQTL 226
VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSN EKK V QTL
Sbjct: 181 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTL 231
>gi|112363100 SLIT-ROBO Rho GTPase activating protein 2 isoform a
[Homo sapiens]
Length = 1071
Score = 88.2 bits (217), Expect = 7e-18
Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 7/165 (4%)
Query: 69 LVDACTS-LEEH-IHTEGLFRKSGSVIRLKALKNKVDHGE----GCLSSAPPCDIAGLLK 122
+V++C + H + EG+FR SGS + + +KN + GE G + IAG+LK
Sbjct: 507 VVESCIRFISRHGLQHEGIFRVSGSQVEVNDIKNAFERGEDPLAGDQNDHDMDSIAGVLK 566
Query: 123 QFFRELPEPILPADL-HEALLKAQQLGTEEKNKAILLLSCLLADHTVHVLRYFFNFLRNV 181
+FR L P+ P D+ H+ + +E+ I + +L T+ ++RY F FL ++
Sbjct: 567 LYFRGLEHPLFPKDIFHDLMACVTMDNLQERALHIRKVLLVLPKTTLIIMRYLFAFLNHL 626
Query: 182 SLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKKGVYQTL 226
S S EN MD NLA+ F P+L+ EGH+++S A + +T+
Sbjct: 627 SQFSEENMMDPYNLAICFGPSLMSVPEGHDQVSCQAHVNELIKTI 671
>gi|112363096 SLIT-ROBO Rho GTPase activating protein 2 isoform b
[Homo sapiens]
Length = 836
Score = 88.2 bits (217), Expect = 7e-18
Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 7/165 (4%)
Query: 69 LVDACTS-LEEH-IHTEGLFRKSGSVIRLKALKNKVDHGE----GCLSSAPPCDIAGLLK 122
+V++C + H + EG+FR SGS + + +KN + GE G + IAG+LK
Sbjct: 507 VVESCIRFISRHGLQHEGIFRVSGSQVEVNDIKNAFERGEDPLAGDQNDHDMDSIAGVLK 566
Query: 123 QFFRELPEPILPADL-HEALLKAQQLGTEEKNKAILLLSCLLADHTVHVLRYFFNFLRNV 181
+FR L P+ P D+ H+ + +E+ I + +L T+ ++RY F FL ++
Sbjct: 567 LYFRGLEHPLFPKDIFHDLMACVTMDNLQERALHIRKVLLVLPKTTLIIMRYLFAFLNHL 626
Query: 182 SLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKKGVYQTL 226
S S EN MD NLA+ F P+L+ EGH+++S A + +T+
Sbjct: 627 SQFSEENMMDPYNLAICFGPSLMSVPEGHDQVSCQAHVNELIKTI 671
>gi|91208437 GEM interacting protein [Homo sapiens]
Length = 970
Score = 84.3 bits (207), Expect = 1e-16
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 21/187 (11%)
Query: 46 IFGVPFNALPHSAVPEYGHIPSFLVDACTSLEEH--IHTEGLFRKSGSVIRLKALKNKVD 103
+FGV F LP E +P F+V CT+ EH + +G++R SGS +R++ L +
Sbjct: 548 LFGVDFLQLPRDFPEE---VP-FVVTKCTAEIEHRALDVQGIYRVSGSRVRVERLCQAFE 603
Query: 104 HGEGC--LSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQL---------GTEEK 152
+G LS P D++ +LK+F +EL EP++P L++A + + GT
Sbjct: 604 NGRALVELSGNSPHDVSSVLKRFLQELTEPVIPFHLYDAFISLAKTLHADPGDDPGTPSP 663
Query: 153 NKAIL----LLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSE 208
+ ++ L L D + LR+ L V+ R ENKM ++NL ++F P LL+ +
Sbjct: 664 SPEVIRSLKTLLVQLPDSNYNTLRHLVAHLFRVAARFMENKMSANNLGIVFGPTLLRPPD 723
Query: 209 GHEKMSS 215
G S+
Sbjct: 724 GPRAASA 730
>gi|156071465 Rho GTPase activating protein 4 [Homo sapiens]
Length = 946
Score = 83.6 bits (205), Expect = 2e-16
Identities = 55/151 (36%), Positives = 81/151 (53%), Gaps = 9/151 (5%)
Query: 83 EGLFRKSGSVIRLKALKNKVDHGE-----GCLSSAPPCD-IAGLLKQFFRELPEPILPAD 136
EG+FR SG+ +R+ +++ + GE GC +A D +AG+LK +FR L P+ P D
Sbjct: 539 EGIFRVSGAQLRVSEIRDAFERGEDPLVEGC--TAHDLDSVAGVLKLYFRSLEPPLFPPD 596
Query: 137 LHEALLKAQQL-GTEEKNKAILLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNL 195
L LL + +L T E+ + + L L + VLRY F FL +++ S EN MD NL
Sbjct: 597 LFGELLASSELEATAERVEHVSRLLWRLPAPVLVVLRYLFTFLNHLAQYSDENMMDPYNL 656
Query: 196 AVIFAPNLLQTSEGHEKMSSNAEKKGVYQTL 226
AV F P LL G + ++ + QTL
Sbjct: 657 AVCFGPTLLPVPAGQDPVALQGRVNQLVQTL 687
>gi|34013590 Rho GTPase activating protein 2 [Homo sapiens]
Length = 698
Score = 83.6 bits (205), Expect = 2e-16
Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 7/171 (4%)
Query: 42 IGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSL--EEHIHTEGLFRKSGSVIRLKALK 99
+GG IFG H + LV+ C E + EGLFR G ++ L+
Sbjct: 148 LGGGIFGQRLEETVHHERKYGPRLAPLLVEQCVDFIRERGLTEEGLFRMPGQANLVRDLQ 207
Query: 100 NKVDHGEGCL--SSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAIL 157
+ D GE L S+ +A LLK + RELPEP++P +E L QL T+++ + L
Sbjct: 208 DSFDCGEKPLFDSTTDVHTVASLLKLYLRELPEPVVPFARYEDFLSCAQLLTKDEGEGTL 267
Query: 158 LLS---CLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQ 205
L+ L ++LRY FL V S+ NKM NLA +F PN+L+
Sbjct: 268 ELAKQVSNLPQANYNLLRYICKFLDEVQAYSNVNKMSVQNLATVFGPNILR 318
>gi|7382480 Rho GTPase activating protein 6 isoform 4 [Homo sapiens]
Length = 771
Score = 80.1 bits (196), Expect = 2e-15
Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 25/226 (11%)
Query: 60 PEYGHIPSFLVDACTSLEEH-IHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPC--D 116
P Y +P + C LE+H + T G+FR S R++ L+ + D G D
Sbjct: 202 PIYRQVPRLVDSCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVSLEEEHSVHD 261
Query: 117 IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLAD---HTVHVLRY 173
+A LLK+F R++P+P+L +L+ A + L EE+ + LL LL T+H L
Sbjct: 262 VAALLKEFLRDMPDPLLTRELYTAFINTLLLEPEEQLGTLQLLIYLLPPCNCDTLHRLLQ 321
Query: 174 FFNFLR-----NVSLRSSE---NKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKKGVYQT 225
F + + N+S E NKM S NLA IF PNLL H++ SS +K+ Q+
Sbjct: 322 FLSIVARHADDNISKDGQEVTGNKMTSLNLATIFGPNLL-----HKQKSS--DKEFSVQS 374
Query: 226 LSWKRYQPCWVLMVSVLLHHWKALKKV----NMKLLVNIREREDNV 267
+ + +V ++ +++AL V ++L+++ E + +V
Sbjct: 375 SARAEESTAIIAVVQKMIENYEALFMVPPDLQNEVLISLLETDPDV 420
>gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo
sapiens]
Length = 765
Score = 80.1 bits (196), Expect = 2e-15
Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 25/226 (11%)
Query: 60 PEYGHIPSFLVDACTSLEEH-IHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPC--D 116
P Y +P + C LE+H + T G+FR S R++ L+ + D G D
Sbjct: 405 PIYRQVPRLVDSCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVSLEEEHSVHD 464
Query: 117 IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLAD---HTVHVLRY 173
+A LLK+F R++P+P+L +L+ A + L EE+ + LL LL T+H L
Sbjct: 465 VAALLKEFLRDMPDPLLTRELYTAFINTLLLEPEEQLGTLQLLIYLLPPCNCDTLHRLLQ 524
Query: 174 FFNFLR-----NVSLRSSE---NKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKKGVYQT 225
F + + N+S E NKM S NLA IF PNLL H++ SS +K+ Q+
Sbjct: 525 FLSIVARHADDNISKDGQEVTGNKMTSLNLATIFGPNLL-----HKQKSS--DKEFSVQS 577
Query: 226 LSWKRYQPCWVLMVSVLLHHWKALKKV----NMKLLVNIREREDNV 267
+ + +V ++ +++AL V ++L+++ E + +V
Sbjct: 578 SARAEESTAIIAVVQKMIENYEALFMVPPDLQNEVLISLLETDPDV 623
>gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo
sapiens]
Length = 974
Score = 80.1 bits (196), Expect = 2e-15
Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 25/226 (11%)
Query: 60 PEYGHIPSFLVDACTSLEEH-IHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPC--D 116
P Y +P + C LE+H + T G+FR S R++ L+ + D G D
Sbjct: 405 PIYRQVPRLVDSCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVSLEEEHSVHD 464
Query: 117 IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLAD---HTVHVLRY 173
+A LLK+F R++P+P+L +L+ A + L EE+ + LL LL T+H L
Sbjct: 465 VAALLKEFLRDMPDPLLTRELYTAFINTLLLEPEEQLGTLQLLIYLLPPCNCDTLHRLLQ 524
Query: 174 FFNFLR-----NVSLRSSE---NKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKKGVYQT 225
F + + N+S E NKM S NLA IF PNLL H++ SS +K+ Q+
Sbjct: 525 FLSIVARHADDNISKDGQEVTGNKMTSLNLATIFGPNLL-----HKQKSS--DKEFSVQS 577
Query: 226 LSWKRYQPCWVLMVSVLLHHWKALKKV----NMKLLVNIREREDNV 267
+ + +V ++ +++AL V ++L+++ E + +V
Sbjct: 578 SARAEESTAIIAVVQKMIENYEALFMVPPDLQNEVLISLLETDPDV 623
>gi|44917604 SLIT-ROBO Rho GTPase activating protein 1 [Homo
sapiens]
Length = 1085
Score = 79.7 bits (195), Expect = 2e-15
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 7/183 (3%)
Query: 51 FNALPHSAVPEYGHIPSFLVDACTSLEE--HIHTEGLFRKSGSVIRLKALKNKVDHGEGC 108
FN + V + G + +V++C + +G+FR SGS + + +KN + GE
Sbjct: 504 FNGDLETFVKDSGQVIPLIVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNSFERGENP 563
Query: 109 L----SSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGT-EEKNKAILLLSCLL 163
L S+ +AG+LK +FR L P+ P + L+ ++ E+ I L L
Sbjct: 564 LADDQSNHDINSVAGVLKLYFRGLENPLFPKERFNDLISCIRIDNLYERALHIRKLLLTL 623
Query: 164 ADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKKGVY 223
+ V+RY F FL ++S S EN MD NLA+ F P L+ E +++S A +
Sbjct: 624 PRSVLIVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMPVPEIQDQVSCQAHVNEII 683
Query: 224 QTL 226
+T+
Sbjct: 684 KTI 686
>gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens]
Length = 1528
Score = 79.0 bits (193), Expect = 4e-15
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 9/175 (5%)
Query: 46 IFGVPFNA-LPHSAVPEYGHIPSFLVDACTSLEEH-IHTEGLFRKSGSVIRLKALKNKVD 103
+FGVP + + P +P + A L H + GLFRKSG R++AL+ +
Sbjct: 1075 VFGVPLTVNVQRTGQP----LPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNE 1130
Query: 104 HGEGCLS--SAPPCDIAGLLKQFFRELPEPILPADLHEALLKA-QQLGTEEKNKAILLLS 160
C++ D+A +LKQ+FR+LPEP++ L E L+ Q + +++ +AI
Sbjct: 1131 GAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAI 1190
Query: 161 CLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSS 215
LL D VL+ FL +V+ EN+M +NLAV AP+L + + SS
Sbjct: 1191 MLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRENSS 1245
>gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens]
Length = 1091
Score = 79.0 bits (193), Expect = 4e-15
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 9/175 (5%)
Query: 46 IFGVPFNA-LPHSAVPEYGHIPSFLVDACTSLEEH-IHTEGLFRKSGSVIRLKALKNKVD 103
+FGVP + + P +P + A L H + GLFRKSG R++AL+ +
Sbjct: 638 VFGVPLTVNVQRTGQP----LPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNE 693
Query: 104 HGEGCLS--SAPPCDIAGLLKQFFRELPEPILPADLHEALLKA-QQLGTEEKNKAILLLS 160
C++ D+A +LKQ+FR+LPEP++ L E L+ Q + +++ +AI
Sbjct: 694 GAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAI 753
Query: 161 CLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSS 215
LL D VL+ FL +V+ EN+M +NLAV AP+L + + SS
Sbjct: 754 MLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRENSS 808
>gi|24307967 SLIT-ROBO Rho GTPase activating protein 3 isoform a
[Homo sapiens]
Length = 1099
Score = 78.6 bits (192), Expect = 5e-15
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 7/183 (3%)
Query: 51 FNALPHSAVPEYGHIPSFLVDACTSLEE--HIHTEGLFRKSGSVIRLKALKNKVDHGEGC 108
FN + + + G +V++C + +G+FR GS + + +KN + GE
Sbjct: 504 FNGSMEAFIKDSGQAIPLVVESCIRYINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDP 563
Query: 109 L----SSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQL-GTEEKNKAILLLSCLL 163
L + +AG+LK +FR L P+ P + + L+ +L E+ I + L
Sbjct: 564 LVDDQNERDINSVAGVLKLYFRGLENPLFPKERFQDLISTIKLENPAERVHQIQQILVTL 623
Query: 164 ADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKKGVY 223
+ V+RY F FL ++S S EN MD NLA+ F P L+ +G + +S A V
Sbjct: 624 PRVVIVVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMHIPDGQDPVSCQAHINEVI 683
Query: 224 QTL 226
+T+
Sbjct: 684 KTI 686
>gi|4757766 Rho GTPase activating protein 1 [Homo sapiens]
Length = 439
Score = 77.8 bits (190), Expect = 9e-15
Identities = 56/168 (33%), Positives = 83/168 (49%), Gaps = 18/168 (10%)
Query: 47 FGVPFNALPHSAVPEYGHIPSFLVDACTSLEEH-IHTEGLFRKSGSVIRLKALKNKVDHG 105
FGV L PE IP L + L+ H + TEG+FR+S + ++ ++ K + G
Sbjct: 242 FGVSLQHLQEKN-PEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG 300
Query: 106 EGCLSSAPPCDI---------AGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAI 156
P D A +LK F RELPEP+L DL+ ++ + ++ A
Sbjct: 301 L-------PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPAT 353
Query: 157 LLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLL 204
L + L + VLR+ FL +S S +NKM ++NLAV+F PNLL
Sbjct: 354 LQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLL 401
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 77.8 bits (190), Expect = 9e-15
Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 11/146 (7%)
Query: 67 SFLVDACTS--LEEHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLS-----SAPPCDIAG 119
+F ++AC + LE + EGLFR + S +LK LK +D C+ SA P IAG
Sbjct: 269 AFPIEACVTMLLECGMQEEGLFRVAPSASKLKKLKAALDC---CVVDVQEYSADPHAIAG 325
Query: 120 LLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLADHTVH-VLRYFFNFL 178
LK + RELPEP++ +L++ ++A + ++K L +C H +RY FL
Sbjct: 326 ALKSYLRELPEPLMTFELYDEWIQASNVQEQDKKLQALWNACEKLPKANHNNIRYLIKFL 385
Query: 179 RNVSLRSSENKMDSSNLAVIFAPNLL 204
+S NKM SN+A++ PNLL
Sbjct: 386 SKLSEYQDVNKMTPSNMAIVLGPNLL 411
>gi|75677374 SLIT-ROBO Rho GTPase activating protein 3 isoform b
[Homo sapiens]
Length = 1075
Score = 76.3 bits (186), Expect = 3e-14
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 5/152 (3%)
Query: 80 IHTEGLFRKSGSVIRLKALKNKVDHGEGCL----SSAPPCDIAGLLKQFFRELPEPILPA 135
+ +G+FR GS + + +KN + GE L + +AG+LK +FR L P+ P
Sbjct: 511 LQQQGIFRVPGSQVEVNDIKNSFERGEDPLVDDQNERDINSVAGVLKLYFRGLENPLFPK 570
Query: 136 DLHEALLKAQQL-GTEEKNKAILLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSN 194
+ + L+ +L E+ I + L + V+RY F FL ++S S EN MD N
Sbjct: 571 ERFQDLISTIKLENPAERVHQIQQILVTLPRVVIVVMRYLFAFLNHLSQYSDENMMDPYN 630
Query: 195 LAVIFAPNLLQTSEGHEKMSSNAEKKGVYQTL 226
LA+ F P L+ +G + +S A V +T+
Sbjct: 631 LAICFGPTLMHIPDGQDPVSCQAHINEVIKTI 662
>gi|226423858 PRR5-ARHGAP8 fusion protein [Homo sapiens]
Length = 555
Score = 74.3 bits (181), Expect = 1e-13
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 5/155 (3%)
Query: 65 IPSFLVDACTSLEEH-IHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDI---AGL 120
IP L T L E + TEGLFR+S SV ++ ++ + G+ ++ DI A +
Sbjct: 331 IPPVLRFTVTYLREKGLRTEGLFRRSASVQTVREIQRLYNQGKP-VNFDDYGDIHIPAVI 389
Query: 121 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLADHTVHVLRYFFNFLRN 180
LK F RELP+P+L +E +L + + + + L +H VLRY FL
Sbjct: 390 LKTFLRELPQPLLTFQAYEQILGITCVESSLRVTGCRQILRSLPEHNYVVLRYLMGFLHA 449
Query: 181 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSS 215
VS S NKM+SSNLA +F NL+ S+G +S+
Sbjct: 450 VSRESIFNKMNSSNLACVFGLNLIWPSQGVSSLSA 484
>gi|66346660 Rho GTPase activating protein 8 isoform 2 [Homo
sapiens]
Length = 433
Score = 74.3 bits (181), Expect = 1e-13
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 5/155 (3%)
Query: 65 IPSFLVDACTSLEEH-IHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDI---AGL 120
IP L T L E + TEGLFR+S SV ++ ++ + G+ ++ DI A +
Sbjct: 209 IPPVLRFTVTYLREKGLRTEGLFRRSASVQTVREIQRLYNQGKP-VNFDDYGDIHIPAVI 267
Query: 121 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLADHTVHVLRYFFNFLRN 180
LK F RELP+P+L +E +L + + + + L +H VLRY FL
Sbjct: 268 LKTFLRELPQPLLTFQAYEQILGITCVESSLRVTGCRQILRSLPEHNYVVLRYLMGFLHA 327
Query: 181 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSS 215
VS S NKM+SSNLA +F NL+ S+G +S+
Sbjct: 328 VSRESIFNKMNSSNLACVFGLNLIWPSQGVSSLSA 362
>gi|66346662 Rho GTPase activating protein 8 isoform 1 [Homo
sapiens]
Length = 464
Score = 74.3 bits (181), Expect = 1e-13
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 5/155 (3%)
Query: 65 IPSFLVDACTSLEEH-IHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDI---AGL 120
IP L T L E + TEGLFR+S SV ++ ++ + G+ ++ DI A +
Sbjct: 240 IPPVLRFTVTYLREKGLRTEGLFRRSASVQTVREIQRLYNQGKP-VNFDDYGDIHIPAVI 298
Query: 121 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLADHTVHVLRYFFNFLRN 180
LK F RELP+P+L +E +L + + + + L +H VLRY FL
Sbjct: 299 LKTFLRELPQPLLTFQAYEQILGITCVESSLRVTGCRQILRSLPEHNYVVLRYLMGFLHA 358
Query: 181 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSS 215
VS S NKM+SSNLA +F NL+ S+G +S+
Sbjct: 359 VSRESIFNKMNSSNLACVFGLNLIWPSQGVSSLSA 393
>gi|39932589 Rho GTPase activating protein 18 [Homo sapiens]
Length = 663
Score = 73.9 bits (180), Expect = 1e-13
Identities = 66/204 (32%), Positives = 95/204 (46%), Gaps = 22/204 (10%)
Query: 46 IFGVPFNAL---PHSAVPEYGHIPSFLVDACTSLEEH-IHTEGLFRKSGSVIRLKALKNK 101
+F VP AL VP IP + +EE + TEGL R G+ IR+K L +
Sbjct: 321 LFCVPLTALLEQDQRKVPGM-RIPLIFQKLISRIEERGLETEGLLRIPGAAIRIKNLCQE 379
Query: 102 VD----HGEGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKN-KAI 156
++ G S D A LLK F RELP+P+L + +A Q L T+++ +A+
Sbjct: 380 LEAKFYEGTFNWESVKQHDAASLLKLFIRELPQPLLSVEYLKAFQAVQNLPTKKQQLQAL 439
Query: 157 LLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNL-------LQTSEG 209
LL LL D L+ FL+ V +NKM N+A++ APNL L++SE
Sbjct: 440 NLLVILLPDANRDTLKALLEFLQRVIDNKEKNKMTVMNVAMVMAPNLFMCHALGLKSSEQ 499
Query: 210 HEKMSSNAEKKGV-----YQTLSW 228
E + + + YQ L W
Sbjct: 500 REFVMAAGTANTMHLLIKYQKLLW 523
>gi|111154090 Rho GTPase activating protein 24 isoform 3 [Homo
sapiens]
Length = 653
Score = 72.8 bits (177), Expect = 3e-13
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Query: 43 GGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSL--EEHIHTEGLFRKSGSVIRLKALKN 100
GG IFG + LV+ C + + EGLFR G +K L++
Sbjct: 34 GGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQD 93
Query: 101 KVDHGE--GCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILL 158
D GE S+ +A LLK + RELPEP++P +E L +L ++E+ +
Sbjct: 94 AFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKE 153
Query: 159 LSCLLADHTV---HVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQ 205
L+ + V ++L+Y FL V S NKM NLA +F PN+L+
Sbjct: 154 LAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILR 203
>gi|111154092 Rho GTPase activating protein 24 isoform 1 [Homo
sapiens]
Length = 748
Score = 72.8 bits (177), Expect = 3e-13
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Query: 43 GGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSL--EEHIHTEGLFRKSGSVIRLKALKN 100
GG IFG + LV+ C + + EGLFR G +K L++
Sbjct: 129 GGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQD 188
Query: 101 KVDHGE--GCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILL 158
D GE S+ +A LLK + RELPEP++P +E L +L ++E+ +
Sbjct: 189 AFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKE 248
Query: 159 LSCLLADHTV---HVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQ 205
L+ + V ++L+Y FL V S NKM NLA +F PN+L+
Sbjct: 249 LAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILR 298
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 72.4 bits (176), Expect = 4e-13
Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 70 VDACTSL--EEHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSS--APPCDIAGLLKQFF 125
++AC L E + EGLFR +LK LK +D L + P +AG LK +
Sbjct: 269 IEACVMLLLETGMKEEGLFRIGAGASKLKKLKAALDCSTSHLDEFYSDPHAVAGALKSYL 328
Query: 126 RELPEPILPADLHEALLKAQQLGTEEKNKAILLLSC-LLADHTVHVLRYFFNFLRNVSLR 184
RELPEP++ +L+E + + ++K L +C L RY FL ++
Sbjct: 329 RELPEPLMTFNLYEEWTQVASVQDQDKKLQDLWRTCQKLPPQNFVNFRYLIKFLAKLAQT 388
Query: 185 SSENKMDSSNLAVIFAPNLL 204
S NKM SN+A++ PNLL
Sbjct: 389 SDVNKMTPSNIAIVLGPNLL 408
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 72.4 bits (176), Expect = 4e-13
Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 70 VDACTSL--EEHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSS--APPCDIAGLLKQFF 125
++AC L E + EGLFR +LK LK +D L + P +AG LK +
Sbjct: 269 IEACVMLLLETGMKEEGLFRIGAGASKLKKLKAALDCSTSHLDEFYSDPHAVAGALKSYL 328
Query: 126 RELPEPILPADLHEALLKAQQLGTEEKNKAILLLSC-LLADHTVHVLRYFFNFLRNVSLR 184
RELPEP++ +L+E + + ++K L +C L RY FL ++
Sbjct: 329 RELPEPLMTFNLYEEWTQVASVQDQDKKLQDLWRTCQKLPPQNFVNFRYLIKFLAKLAQT 388
Query: 185 SSENKMDSSNLAVIFAPNLL 204
S NKM SN+A++ PNLL
Sbjct: 389 SDVNKMTPSNIAIVLGPNLL 408
>gi|239757488 PREDICTED: chromosome 20 open reading frame 95 [Homo
sapiens]
Length = 622
Score = 72.0 bits (175), Expect = 5e-13
Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 20/231 (8%)
Query: 45 KIFGVPFNAL---PHSAVPEYGHIPSFLVDACTSLEEH-IHTEGLFRKSGSVIRLKALKN 100
++FGVP ++L H +P +P L + LE+ + EG+ R GS R+K L+
Sbjct: 266 RLFGVPLDSLLEADHKVLPST-QVPLVLQALLSCLEKRGLDMEGILRVPGSQARVKGLEQ 324
Query: 101 KVDH----GEGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAI 156
K++ G D + LLK+F R+LP P+L A+ A + ++ +
Sbjct: 325 KLERDFYAGLFSWDEVHHNDASDLLKRFIRKLPTPLLTAEYLPAFAVVPNIPNLKQRLQV 384
Query: 157 L-LLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSS 215
L LL +L + + L+ FLR V R NKM N++ + APNL K+
Sbjct: 385 LHLLILILPEPNRNALKALLEFLRKVVAREQHNKMTLRNVSTVMAPNLFLHQGRPPKLPK 444
Query: 216 NAEKKGVYQTLSWKRYQPCWVLMVSVLLHHWKALKKVNMKLLVNIREREDN 266
EK+ +V +++H+ L V L+ +R+ D+
Sbjct: 445 GKEKQLAEGAAE----------VVQIMVHYQDLLWTVASFLVAQVRKLNDS 485
>gi|239752003 PREDICTED: chromosome 20 open reading frame 95 [Homo
sapiens]
Length = 622
Score = 72.0 bits (175), Expect = 5e-13
Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 20/231 (8%)
Query: 45 KIFGVPFNAL---PHSAVPEYGHIPSFLVDACTSLEEH-IHTEGLFRKSGSVIRLKALKN 100
++FGVP ++L H +P +P L + LE+ + EG+ R GS R+K L+
Sbjct: 266 RLFGVPLDSLLEADHKVLPST-QVPLVLQALLSCLEKRGLDMEGILRVPGSQARVKGLEQ 324
Query: 101 KVDH----GEGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAI 156
K++ G D + LLK+F R+LP P+L A+ A + ++ +
Sbjct: 325 KLERDFYAGLFSWDEVHHNDASDLLKRFIRKLPTPLLTAEYLPAFAVVPNIPNLKQRLQV 384
Query: 157 L-LLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSS 215
L LL +L + + L+ FLR V R NKM N++ + APNL K+
Sbjct: 385 LHLLILILPEPNRNALKALLEFLRKVVAREQHNKMTLRNVSTVMAPNLFLHQGRPPKLPK 444
Query: 216 NAEKKGVYQTLSWKRYQPCWVLMVSVLLHHWKALKKVNMKLLVNIREREDN 266
EK+ +V +++H+ L V L+ +R+ D+
Sbjct: 445 GKEKQLAEGAAE----------VVQIMVHYQDLLWTVASFLVAQVRKLNDS 485
>gi|239746488 PREDICTED: Rho GTPase-activating protein 18-like [Homo
sapiens]
Length = 622
Score = 72.0 bits (175), Expect = 5e-13
Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 20/231 (8%)
Query: 45 KIFGVPFNAL---PHSAVPEYGHIPSFLVDACTSLEEH-IHTEGLFRKSGSVIRLKALKN 100
++FGVP ++L H +P +P L + LE+ + EG+ R GS R+K L+
Sbjct: 266 RLFGVPLDSLLEADHKVLPST-QVPLVLQALLSCLEKRGLDMEGILRVPGSQARVKGLEQ 324
Query: 101 KVDH----GEGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAI 156
K++ G D + LLK+F R+LP P+L A+ A + ++ +
Sbjct: 325 KLERDFYAGLFSWDEVHHNDASDLLKRFIRKLPTPLLTAEYLPAFAVVPNIPNLKQRLQV 384
Query: 157 L-LLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSS 215
L LL +L + + L+ FLR V R NKM N++ + APNL K+
Sbjct: 385 LHLLILILPEPNRNALKALLEFLRKVVAREQHNKMTLRNVSTVMAPNLFLHQGRPPKLPK 444
Query: 216 NAEKKGVYQTLSWKRYQPCWVLMVSVLLHHWKALKKVNMKLLVNIREREDN 266
EK+ +V +++H+ L V L+ +R+ D+
Sbjct: 445 GKEKQLAEGAAE----------VVQIMVHYQDLLWTVASFLVAQVRKLNDS 485
>gi|51479148 Rho GTPase activating protein 20 [Homo sapiens]
Length = 1191
Score = 71.6 bits (174), Expect = 7e-13
Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 8/164 (4%)
Query: 44 GKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLEEHIH-TEGLFRKSGSVIRLKALKNKV 102
G++FG+ +LP+ + E ++P ++D L + T+G+FR+S +V + LK K+
Sbjct: 360 GQLFGI---SLPN--ICENDNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKL 414
Query: 103 DHG-EGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGT-EEKNKAILLLS 160
+ G E L IA +LK F R +P I +DL++ + G EEK + L
Sbjct: 415 NSGVEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLL 474
Query: 161 CLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLL 204
L V +LRY F L N+ SS N+M + NLAV AP++L
Sbjct: 475 DQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSIL 518
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,828,160
Number of Sequences: 37866
Number of extensions: 414197
Number of successful extensions: 1177
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 120
length of query: 267
length of database: 18,247,518
effective HSP length: 100
effective length of query: 167
effective length of database: 14,460,918
effective search space: 2414973306
effective search space used: 2414973306
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.