Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 8924262
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8924262 triggering receptor expressed on myeloid cells 1
[Homo sapiens]
(234 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8924262 triggering receptor expressed on myeloid cells 1 [Hom... 472 e-133
gi|153945782 natural cytotoxicity triggering receptor 2 [Homo sa... 53 2e-07
gi|9507203 triggering receptor expressed on myeloid cells 2 prec... 42 3e-04
gi|37700254 triggering receptor expressed on myeloid cells-like ... 41 0.001
gi|30794266 triggering receptor expressed on myeloid cells-like ... 39 0.003
gi|170932501 triggering receptor expressed on myeloid cells-like... 38 0.007
gi|239756941 PREDICTED: similar to CD300C antigen [Homo sapiens] 35 0.042
gi|239751445 PREDICTED: similar to CD300C antigen [Homo sapiens] 35 0.042
gi|239745950 PREDICTED: similar to CD300C antigen [Homo sapiens] 35 0.042
gi|51593098 class-I MHC-restricted T cell associated molecule [H... 35 0.042
gi|21361429 V-set and immunoglobulin domain containing 2 [Homo s... 35 0.042
gi|172072602 Fc receptor, IgA, IgM, high affinity isoform 2 [Hom... 34 0.12
gi|142976733 surface glycoprotein, Ig superfamily member [Homo s... 33 0.28
gi|21687218 CD300 molecule-like family member g [Homo sapiens] 32 0.36
gi|91208433 CD86 antigen isoform 2 precursor [Homo sapiens] 32 0.61
gi|91208430 CD86 antigen isoform 1 [Homo sapiens] 32 0.61
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho... 31 0.80
gi|172072600 Fc receptor, IgA, IgM, high affinity isoform 1 [Hom... 31 0.80
gi|117320515 Fc receptor, IgA, IgM, high affinity isoform 1 [Hom... 31 0.80
gi|15029530 leucine rich repeat containing 4 [Homo sapiens] 31 0.80
gi|5729776 CD300C antigen [Homo sapiens] 30 1.4
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 30 2.3
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa... 29 3.0
gi|161019170 mucin 5AC [Homo sapiens] 29 3.0
gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42... 29 3.0
gi|21314764 Fc receptor-like 3 precursor [Homo sapiens] 29 4.0
gi|4504943 leukocyte-associated immunoglobulin-like receptor 1 i... 29 4.0
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 29 4.0
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 29 4.0
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 29 4.0
>gi|8924262 triggering receptor expressed on myeloid cells 1 [Homo
sapiens]
Length = 234
Score = 472 bits (1214), Expect = e-133
Identities = 234/234 (100%), Positives = 234/234 (100%)
Query: 1 MRKTRLWGLLWMLFVSELRAATKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRD 60
MRKTRLWGLLWMLFVSELRAATKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRD
Sbjct: 1 MRKTRLWGLLWMLFVSELRAATKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRD 60
Query: 61 GEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPK 120
GEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPK
Sbjct: 61 GEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPK 120
Query: 121 EPHMLFDRIRLVVTKGFSGTPGSNENSTQNVYKIPPTTTKALCPLYTSPRTVTQAPPKST 180
EPHMLFDRIRLVVTKGFSGTPGSNENSTQNVYKIPPTTTKALCPLYTSPRTVTQAPPKST
Sbjct: 121 EPHMLFDRIRLVVTKGFSGTPGSNENSTQNVYKIPPTTTKALCPLYTSPRTVTQAPPKST 180
Query: 181 ADVSTPDSEINLTNVTDIIRVPVFNIVILLAGGFLSKSLVFSVLFAVTLRSFVP 234
ADVSTPDSEINLTNVTDIIRVPVFNIVILLAGGFLSKSLVFSVLFAVTLRSFVP
Sbjct: 181 ADVSTPDSEINLTNVTDIIRVPVFNIVILLAGGFLSKSLVFSVLFAVTLRSFVP 234
>gi|153945782 natural cytotoxicity triggering receptor 2 [Homo
sapiens]
Length = 276
Score = 53.1 bits (126), Expect = 2e-07
Identities = 58/199 (29%), Positives = 72/199 (36%), Gaps = 28/199 (14%)
Query: 34 GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTE--RPSKNSHPVQVGRIILEDYH 91
GQTL V+C Y +K W + L C SK R + D
Sbjct: 33 GQTLTVRCQYPPTGSLYEKKGWC-----KEASALVCIRLVTSSKPRTMAWTSRFTIWDDP 87
Query: 92 DHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTKGFSGTPGS------NE 145
D G V M +L+ EDSG Y C IY+P R LVV+ + T S
Sbjct: 88 DAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVVSPASASTQTSWTPRDLVS 147
Query: 146 NSTQNVYKIPPTTTKALCPLYTSPRTVTQAPPKSTADVSTPDSEINLTNVTDIIRVPVFN 205
+ TQ +PPT P S V P ST + I VPVF
Sbjct: 148 SQTQTQSCVPPTAGARQAPESPSTIPVPSQPQNST---------LRPGPAAPIALVPVF- 197
Query: 206 IVILLAGGFLSKSLVFSVL 224
G ++KSLV S L
Sbjct: 198 -----CGLLVAKSLVLSAL 211
>gi|9507203 triggering receptor expressed on myeloid cells 2
precursor [Homo sapiens]
Length = 230
Score = 42.4 bits (98), Expect = 3e-04
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 9 LLWMLFVSELRAATKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAW--QIIRDGEMPKT 66
LL +LFV+EL A T ++ GQ+L V C Y K +KAW Q+ G +
Sbjct: 6 LLILLFVTELSGAHNTTV--FQGVAGQSLQVSCPYDSMKHWGRRKAWCRQLGEKGPCQRV 63
Query: 67 LACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQC 113
++ + G + D G L + + NLQ D+GLYQC
Sbjct: 64 VSTHNLWLLSFLRRWNGSTAITDDTLGGTLTITLRNLQPHDAGLYQC 110
>gi|37700254 triggering receptor expressed on myeloid cells-like 4
[Homo sapiens]
Length = 200
Score = 40.8 bits (94), Expect = 0.001
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 27 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRII 86
E+ GQTL ++C Y+ ++ K+W P SK VQ
Sbjct: 26 EELHKHPGQTLLLQCQYSPKRGPYQPKSWC---QQTSPSRCTLLVTSSKPWTAVQKSHYT 82
Query: 87 LEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTKGFSGTP 141
+ D + G + M+ L DSG Y C IY + + I LVV+ + +P
Sbjct: 83 IWDKPNAGFFNITMIQLTQNDSGFYWCGIYNASENIITVLRNISLVVSPAPTTSP 137
>gi|30794266 triggering receptor expressed on myeloid cells-like 1
[Homo sapiens]
Length = 311
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 9 LLWMLFVSELRAATKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAW-QIIRDGEMPKTL 67
LL +L E + E + G ++ V+C Y L+ +QK W + + +G P
Sbjct: 6 LLLLLLGLEGQGIVGSLPEVLQAPVGSSILVQCHYRLQD-VKAQKVWCRFLPEGCQPLVS 64
Query: 68 ACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVI 115
+ +R + R L D GLL+V MV LQ ED+G Y C++
Sbjct: 65 SAVDRRAPAGR-----RTFLTDLGG-GLLQVEMVTLQEEDAGEYGCMV 106
>gi|170932501 triggering receptor expressed on myeloid cells-like 2
[Homo sapiens]
Length = 321
Score = 38.1 bits (87), Expect = 0.007
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 28 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIIL 87
K L EG+TL V+C Y K K W IR + P V+ R +L
Sbjct: 28 KVRLLEGETLSVQCSYKGYKNRVEGKVWCKIRKKKC--------EPGFARVWVKGPRYLL 79
Query: 88 EDYHDHGLLRVRMVNLQVEDSGLYQCV 114
+D ++ + MV L+++DSG Y C+
Sbjct: 80 QDDAQAKVVNITMVALKLQDSGRYWCM 106
>gi|239756941 PREDICTED: similar to CD300C antigen [Homo sapiens]
Length = 328
Score = 35.4 bits (80), Expect = 0.042
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 34 GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDH 93
G++L V+C Y EK+ + K W R +P E V+ ++I+ D+
Sbjct: 163 GESLSVQCRYE-EKYKTFNKYW--CRQPCLPIWHEMVETGGSEG-VVRSDQVIITDHPGD 218
Query: 94 GLLRVRMVNLQVEDSGLYQCVIYQPPKEPHML------FDRIRLVVTKGFS-----GTPG 142
V + NL +D+G Y+C I +E + F +++++V+ S TP
Sbjct: 219 LTFTVTLENLTADDAGKYRCGIATILQEDGLSGFLPDPFFQVQVLVSSASSTENSVKTPA 278
Query: 143 SNENSTQNVYKIPPTTTKALCPLYTSP 169
S +Q +P +T L PL P
Sbjct: 279 SPTRPSQCQGSLPSSTCFLLLPLLKVP 305
>gi|239751445 PREDICTED: similar to CD300C antigen [Homo sapiens]
Length = 259
Score = 35.4 bits (80), Expect = 0.042
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 34 GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDH 93
G++L V+C Y EK+ + K W R +P E V+ ++I+ D+
Sbjct: 94 GESLSVQCRYE-EKYKTFNKYW--CRQPCLPIWHEMVETGGSEG-VVRSDQVIITDHPGD 149
Query: 94 GLLRVRMVNLQVEDSGLYQCVIYQPPKEPHML------FDRIRLVVTKGFS-----GTPG 142
V + NL +D+G Y+C I +E + F +++++V+ S TP
Sbjct: 150 LTFTVTLENLTADDAGKYRCGIATILQEDGLSGFLPDPFFQVQVLVSSASSTENSVKTPA 209
Query: 143 SNENSTQNVYKIPPTTTKALCPLYTSP 169
S +Q +P +T L PL P
Sbjct: 210 SPTRPSQCQGSLPSSTCFLLLPLLKVP 236
>gi|239745950 PREDICTED: similar to CD300C antigen [Homo sapiens]
Length = 328
Score = 35.4 bits (80), Expect = 0.042
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 34 GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDH 93
G++L V+C Y EK+ + K W R +P E V+ ++I+ D+
Sbjct: 163 GESLSVQCRYE-EKYKTFNKYW--CRQPCLPIWHEMVETGGSEG-VVRSDQVIITDHPGD 218
Query: 94 GLLRVRMVNLQVEDSGLYQCVIYQPPKEPHML------FDRIRLVVTKGFS-----GTPG 142
V + NL +D+G Y+C I +E + F +++++V+ S TP
Sbjct: 219 LTFTVTLENLTADDAGKYRCGIATILQEDGLSGFLPDPFFQVQVLVSSASSTENSVKTPA 278
Query: 143 SNENSTQNVYKIPPTTTKALCPLYTSP 169
S +Q +P +T L PL P
Sbjct: 279 SPTRPSQCQGSLPSSTCFLLLPLLKVP 305
>gi|51593098 class-I MHC-restricted T cell associated molecule [Homo
sapiens]
Length = 393
Score = 35.4 bits (80), Expect = 0.042
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 7 WGLLWMLFVSELRAATKLTE-EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPK 65
W +L +L L+ A+ E ++EGQTL +KC +L K +S Q W + G
Sbjct: 3 WRVLSLLAWFPLQEASLTNHTETITVEEGQTLTLKCVTSLRKNSSLQ--W-LTPSGF--- 56
Query: 66 TLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIY 116
T+ E P+ + Q+ +H L + + N+ ++D G+Y+C+ Y
Sbjct: 57 TIFLNEYPALKNSKYQLL------HHSANQLSITVPNVTLQDEGVYKCLHY 101
>gi|21361429 V-set and immunoglobulin domain containing 2 [Homo
sapiens]
Length = 327
Score = 35.4 bits (80), Expect = 0.042
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 24/125 (19%)
Query: 9 LLWMLFVSELRAATKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLA 68
LL L +S L K+ E G+T ++ C Y+ S W ++ G
Sbjct: 13 LLGFLCLSGLAVEVKVPTEPLSTPLGKTAELTCTYSTSVGDSFALEWSFVQPG------- 65
Query: 69 CTERPSKNSHPVQV---GRI-----------ILEDYHDHGLLRVRMVNLQVEDSGLYQCV 114
+P SHP+ G + +L++ G+ +++ ++ D+G Y C
Sbjct: 66 ---KPISESHPILYFTNGHLYPTGSKSKRVSLLQNPPTVGVATLKLTDVHPSDTGTYLCQ 122
Query: 115 IYQPP 119
+ PP
Sbjct: 123 VNNPP 127
>gi|172072602 Fc receptor, IgA, IgM, high affinity isoform 2 [Homo
sapiens]
Length = 552
Score = 33.9 bits (76), Expect = 0.12
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 34 GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKN--SHPVQVGRIILEDYH 91
G + ++C Y Q+ + R G P C S N +H R+ L D+
Sbjct: 95 GGAVTIQCHYAPSSVNRHQRKYWC-RLG--PPRWICQTIVSTNQYTHHRYRDRVALTDFP 151
Query: 92 DHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTKGFSGT 140
GL VR+ L +D G Y C I E +MLF + L ++ G + T
Sbjct: 152 QRGLFVVRLSQLSPDDIGCYLCGI---GSENNMLFLSMNLTISAGPAST 197
>gi|142976733 surface glycoprotein, Ig superfamily member [Homo
sapiens]
Length = 1264
Score = 32.7 bits (73), Expect = 0.28
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 98 VRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTKGFSGTPGSNENSTQNVYKIPPT 157
++++N+ +ED G Y+C Y P H L ++ + K P S++ V+ + PT
Sbjct: 176 LQILNVSLEDKGSYKCAAYNP--VTHQL--KVEPIGRKLLVSRPSSDD-----VHILHPT 226
Query: 158 TTKALCPLYTSPRTV 172
++AL L SP T+
Sbjct: 227 HSQALAVLSRSPVTL 241
>gi|21687218 CD300 molecule-like family member g [Homo sapiens]
Length = 332
Score = 32.3 bits (72), Expect = 0.36
Identities = 41/181 (22%), Positives = 69/181 (38%), Gaps = 30/181 (16%)
Query: 6 LWGLLWMLFVSELRAATKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPK 65
LWG L + L +++ EG T+ ++C Y E+ +K W + G +
Sbjct: 7 LWGCLLLPGYEALEGPEEISGF-----EGDTVSLQCTYR-EELRDHRKYW-CRKGGILFS 59
Query: 66 TLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHML 125
+ T + GR+ + D L V + NL ++D+G Y C + + + +L
Sbjct: 60 RCSGTIYAEEEGQETMKGRVSIRDSRQELSLIVTLWNLTLQDAGEYWCGVEKRGPDESLL 119
Query: 126 FDRIRLVVTKGFSGTPGSNENSTQNVYKIPPTTTKALCPLYTSPRTVTQAPPKSTADVST 185
I L V G PP+ + PL T T+ PK+ A +
Sbjct: 120 ---ISLFVFPGPC---------------CPPSPSPTFQPLAT-----TRLQPKAKAQQTQ 156
Query: 186 P 186
P
Sbjct: 157 P 157
>gi|91208433 CD86 antigen isoform 2 precursor [Homo sapiens]
Length = 323
Score = 31.6 bits (70), Expect = 0.61
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 98 VRMVNLQVEDSGLYQCVIY 116
+R+ NLQ++D GLYQC+I+
Sbjct: 89 LRLHNLQIKDKGLYQCIIH 107
>gi|91208430 CD86 antigen isoform 1 [Homo sapiens]
Length = 329
Score = 31.6 bits (70), Expect = 0.61
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 98 VRMVNLQVEDSGLYQCVIY 116
+R+ NLQ++D GLYQC+I+
Sbjct: 95 LRLHNLQIKDKGLYQCIIH 113
>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
sapiens]
Length = 365
Score = 31.2 bits (69), Expect = 0.80
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 28/149 (18%)
Query: 26 EEKYELKEGQTLDVKCDYTLEKF-------------ASSQKAWQIIRDGEMPKTLACTER 72
EE E +G+T + C +TL A +QK Q+I L ++
Sbjct: 26 EEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVI-------ILYSGDK 78
Query: 73 PSKNSHPVQVGRI-ILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRL 131
+ +P GR+ + G + + NLQ+ D G YQC + K P + +I L
Sbjct: 79 IYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKV---KKAPGVANKKIHL 135
Query: 132 VVTKGFSG----TPGSNENSTQNVYKIPP 156
VV SG GS E + K P
Sbjct: 136 VVLVKPSGARCYVDGSEEIGSDFKIKCEP 164
>gi|172072600 Fc receptor, IgA, IgM, high affinity isoform 1 [Homo
sapiens]
Length = 265
Score = 31.2 bits (69), Expect = 0.80
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 34 GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKN--SHPVQVGRIILEDYH 91
G + ++C Y Q+ + R G P C S N +H R+ L D+
Sbjct: 120 GGAVTIQCHYAPSSVNRHQRKYWC-RLG--PPRWICQTIVSTNQYTHHRYRDRVALTDFP 176
Query: 92 DHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVT 134
GL VR+ L +D G Y C I E +MLF + L ++
Sbjct: 177 QRGLFVVRLSQLSPDDIGCYLCGI---GSENNMLFLSMNLTIS 216
>gi|117320515 Fc receptor, IgA, IgM, high affinity isoform 1 [Homo
sapiens]
Length = 265
Score = 31.2 bits (69), Expect = 0.80
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 34 GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKN--SHPVQVGRIILEDYH 91
G + ++C Y Q+ + R G P C S N +H R+ L D+
Sbjct: 120 GGAVTIQCHYAPSSVNRHQRKYWC-RLG--PPRWICQTIVSTNQYTHHRYRDRVALTDFP 176
Query: 92 DHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVT 134
GL VR+ L +D G Y C I E +MLF + L ++
Sbjct: 177 QRGLFVVRLSQLSPDDIGCYLCGI---GSENNMLFLSMNLTIS 216
>gi|15029530 leucine rich repeat containing 4 [Homo sapiens]
Length = 653
Score = 31.2 bits (69), Expect = 0.80
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 20/130 (15%)
Query: 105 VEDSGLYQCVI-----------YQPPKEPHMLFDRIRLVVTKGFSGTPGSNENSTQNVYK 153
+ D+G+Y C++ Y + T T S E++T+ YK
Sbjct: 416 LSDTGVYTCMVTNVAGNSNASAYLNVSTAELNTSNYSFFTTVTVETTEISPEDTTRK-YK 474
Query: 154 IPPTTTKALCPLYTSPRTV---TQAPPKSTADVSTPDSEINLTNVTDIIR-----VPVFN 205
PTT+ P YT+ TV T PK A +T ++ T++ ++++ + F
Sbjct: 475 PVPTTSTGYQPAYTTSTTVLIQTTRVPKQVAVPATDTTDKMQTSLDEVMKTTKIIIGCFV 534
Query: 206 IVILLAGGFL 215
V LLA L
Sbjct: 535 AVTLLAAAML 544
>gi|5729776 CD300C antigen [Homo sapiens]
Length = 224
Score = 30.4 bits (67), Expect = 1.4
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 34 GQTLDVKCDYTLEKFASSQKAW----QIIRDGEMPKTLACTERPSKNSHPVQVGRIILED 89
G +L V+C Y E + K W QI+R ++ +T K S + GR+ + D
Sbjct: 36 GGSLSVQCRYEKEH-RTLNKFWCRPPQILRCDKIVET--------KGSAGKRNGRVSIRD 86
Query: 90 YHDHGLLRVRMVNLQVEDSGLYQCVIYQP-PKEPHMLFDRIRLVVTKGFSGTPGSNENST 148
+ V + NL ED+G Y C + P ++ H + + V + T S ++S
Sbjct: 87 SPANLSFTVTLENLTEEDAGTYWCGVDTPWLRDFHDPIVEVEVSVFPAGTTTASSPQSSM 146
Query: 149 QNVYKIPPTTTKALCPLYTSPRTVTQAPPK 178
PPT P++T P + P+
Sbjct: 147 GT--SGPPTK----LPVHTWPSVTRKDSPE 170
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 29.6 bits (65), Expect = 2.3
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 31 LKEGQTLDVKCDYTL----EKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRII 86
+K+G +D + L +K + + QIIRD +T+ CT RP K V I
Sbjct: 98 VKQGGIVDKDLRHYLNLRFQKGSVDHELQQIIRDNLYLRTVPCTTRPHKEGEVPGVDYIF 157
Query: 87 L--EDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEP 122
+ ED+ + + +E SG Y+ Y PK P
Sbjct: 158 ITVEDF-----MELEKSGALLE-SGTYEDNYYGTPKPP 189
>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
Length = 215
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 98 VRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 133
V + N+Q ED G+Y C I PP + H +I L V
Sbjct: 112 VMLRNVQPEDEGIYNCYIMNPP-DRHRGHGKIHLQV 146
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 29.3 bits (64), Expect = 3.0
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 128 RIRLVVTKGFSGTPGSNENSTQNVYKIPPTTTKALCPLYTSPRTVTQAPPKSTADVSTPD 187
++ T GF+ TP S+ + PPTTT P+ T T + P++T +
Sbjct: 5065 KVPTTTTTGFTATPSSSPGTALT----PPTTT----PMSTMSTIHTSSTPETTHTSTVLT 5116
Query: 188 SEINLTNVTDIIRVP 202
+ +T T+ P
Sbjct: 5117 TTATMTRATNSTATP 5131
>gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42
precursor [Homo sapiens]
Length = 2012
Score = 29.3 bits (64), Expect = 3.0
Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 23/181 (12%)
Query: 33 EGQTLDVKCDYTLEK--FASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDY 90
+GQ ++ C EK +K +II EM + L T+ + + +I+
Sbjct: 801 QGQKKEMSCTAHGEKPIIVRWEKEDRIINP-EMARYLVSTKEVGEEV--ISTLQILPTVR 857
Query: 91 HDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIR-----LVVTKGFSG------ 139
D G +N ED G+ Q + +PP P + ++ L T GF G
Sbjct: 858 EDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWTMGFDGNSPITG 917
Query: 140 ------TPGSNENSTQNVYKIPPTTTKA-LCPLYTSPRTVTQAPPKSTADVSTPDSEINL 192
+ +S Q + P A + ++ S + K+ S P +E+ +
Sbjct: 918 YDIECKNKSDSWDSAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNELTI 977
Query: 193 T 193
T
Sbjct: 978 T 978
>gi|21314764 Fc receptor-like 3 precursor [Homo sapiens]
Length = 734
Score = 28.9 bits (63), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 90 YHDHGLLRVRMVNLQVEDSGLYQC 113
YHD LL+++ +Q+ + G YQC
Sbjct: 59 YHDEKLLKIKHDKIQITEPGNYQC 82
>gi|4504943 leukocyte-associated immunoglobulin-like receptor 1
isoform a precursor [Homo sapiens]
Length = 287
Score = 28.9 bits (63), Expect = 4.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 97 RVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTKGFSG------TPGSNENSTQ 149
R R+ ++ ++G Y+C+ Y+PPK D + L+V + G PGS+ TQ
Sbjct: 85 RFRIDSVSEGNAGPYRCIYYKPPKWSEQ-SDYLELLVKETSGGPDSPDTEPGSSAGPTQ 142
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 28.9 bits (63), Expect = 4.0
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 134 TKGFSGTPGSNENSTQNVYKIPPTTTKALCPLYTSPR----TVTQAPPKSTADVSTPDSE 189
TKG + T S++ + + PTT K P T+P+ T + PP +T++VSTP +
Sbjct: 673 TKGPTSTT-SDKPAPTTPKETAPTTPKEPAP--TTPKKPAPTTPETPPPTTSEVSTPTTT 729
Query: 190 INLTNV 195
T +
Sbjct: 730 KEPTTI 735
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 28.9 bits (63), Expect = 4.0
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 134 TKGFSGTPGSNENSTQNVYKIPPTTTKALCPLYTSPR----TVTQAPPKSTADVSTPDSE 189
TKG + T S++ + + PTT K P T+P+ T + PP +T++VSTP +
Sbjct: 714 TKGPTSTT-SDKPAPTTPKETAPTTPKEPAP--TTPKKPAPTTPETPPPTTSEVSTPTTT 770
Query: 190 INLTNV 195
T +
Sbjct: 771 KEPTTI 776
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 28.9 bits (63), Expect = 4.0
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 134 TKGFSGTPGSNENSTQNVYKIPPTTTKALCPLYTSPR----TVTQAPPKSTADVSTPDSE 189
TKG + T S++ + + PTT K P T+P+ T + PP +T++VSTP +
Sbjct: 766 TKGPTSTT-SDKPAPTTPKETAPTTPKEPAP--TTPKKPAPTTPETPPPTTSEVSTPTTT 822
Query: 190 INLTNV 195
T +
Sbjct: 823 KEPTTI 828
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,111,382
Number of Sequences: 37866
Number of extensions: 405323
Number of successful extensions: 1654
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1554
Number of HSP's gapped (non-prelim): 133
length of query: 234
length of database: 18,247,518
effective HSP length: 99
effective length of query: 135
effective length of database: 14,498,784
effective search space: 1957335840
effective search space used: 1957335840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.