Guide to the Human Genome
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Name: LOC100130520 Sequence: fasta or formatted (328aa) NCBI GI: 239745950
Description:

PREDICTED: similar to CD300C antigen

Not currently referenced in the text

Other entries for this name:
alt prot {259aa} PREDICTED: similar to CD300C antigen
alt mRNA {328aa} PREDICTED: similar to CD300C antigen
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         15           2
 C cysteine            3.0         10           1
 D aspartate           4.6         15           2
 E glutamate           7.0         23           2
 F phenylalanine       2.1          7           2
 G glycine             9.8         32           3
 H histidine           0.6          2           1
 I isoleucine          2.7          9           2
 K lysine              3.0         10           1
 L leucine            11.9         39           4
 M methionine          1.5          5           1
 N asparagine          2.4          8           1
 P proline             7.3         24           1
 Q glutamine           4.9         16           1
 R arginine            6.7         22           1
 S serine              8.5         28           2
 T threonine           6.7         22           1
 V valine              8.2         27           2
 W tryptophan          3.0         10           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to CD300C antigen 
LOC100130520          1.000   PREDICTED: similar to CD300C antigen 
LOC100130520          0.640   PREDICTED: similar to CD300C antigen 
CD300C                0.198   CD300C antigen 
CD300E                0.193   CD300e molecule 
CD300A                0.137   leukocyte membrane antigen 
CD300LB               0.120   CD300 molecule-like family member b 
CD300LD               0.113   CD300 molecule-like family member d 
CD300LF               0.089   NK inhibitory receptor precursor 
CD300LG               0.058   CD300 molecule-like family member g 
PIGR                  0.046   polymeric immunoglobulin receptor precursor 
TREML1                0.038   triggering receptor expressed on myeloid cells-like ...
FCAMR                 0.037   Fc receptor, IgA, IgM, high affinity isoform 2 [Hom...
NCR2                  0.037   natural cytotoxicity triggering receptor 2 
FCAMR                 0.037   Fc receptor, IgA, IgM, high affinity isoform 1 [Hom...
FCAMR                 0.037   Fc receptor, IgA, IgM, high affinity isoform 1 [Hom...
TREML4                0.032   triggering receptor expressed on myeloid cells-like ...
TREML2                0.028   triggering receptor expressed on myeloid cells-like...
TREM2                 0.026   triggering receptor expressed on myeloid cells 2 prec...
ADORA3                0.017   adenosine A3 receptor isoform 3 
ADORA3                0.017   adenosine A3 receptor isoform 1 
TREM1                 0.015   triggering receptor expressed on myeloid cells 1 [Hom...
LOC100288194          0.015   PREDICTED: hypothetical protein XP_002343605 
FAIM3                 0.014   Fas apoptotic inhibitory molecule 3 isoform a [Homo...
FAIM3                 0.014   Fas apoptotic inhibitory molecule 3 isoform a 
IGSF1                 0.012   immunoglobulin superfamily, member 1 isoform 1 [Homo...
HAVCR1                0.011   hepatitis A virus cellular receptor 1 
HAVCR1                0.011   hepatitis A virus cellular receptor 1 
SIGLEC11              0.011   sialic acid binding Ig-like lectin 11 isoform 2 [Ho...
SIGLEC11              0.011   sialic acid binding Ig-like lectin 11 isoform 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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