Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CD300C Sequence: fasta or formatted (224aa) NCBI GI: 5729776
Description:

CD300C antigen

Referenced in:

Additional Immunoglobulin-related Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         11           1
 C cysteine            1.8          4           1
 D aspartate           3.1          7           1
 E glutamate           4.9         11           2
 F phenylalanine       3.1          7           1
 G glycine             6.7         15           2
 H histidine           2.2          5           1
 I isoleucine          1.8          4           1
 K lysine              3.6          8           1
 L leucine            11.6         26           5
 M methionine          1.8          4           1
 N asparagine          3.6          8           1
 P proline             9.8         22           2
 Q glutamine           2.7          6           1
 R arginine            7.1         16           1
 S serine             11.2         25           2
 T threonine           7.1         16           3
 V valine              8.0         18           1
 W tryptophan          3.6          8           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD300C antigen 
CD300A                0.493   leukocyte membrane antigen 
CD300E                0.319   CD300e molecule 
LOC100130520          0.292   PREDICTED: similar to CD300C antigen 
LOC100130520          0.292   PREDICTED: similar to CD300C antigen 
LOC100130520          0.292   PREDICTED: similar to CD300C antigen 
CD300LD               0.251   CD300 molecule-like family member d 
CD300LB               0.201   CD300 molecule-like family member b 
CD300LG               0.149   CD300 molecule-like family member g 
CD300LF               0.140   NK inhibitory receptor precursor 
PIGR                  0.111   polymeric immunoglobulin receptor precursor 
NCR2                  0.088   natural cytotoxicity triggering receptor 2 
FCAMR                 0.075   Fc receptor, IgA, IgM, high affinity isoform 2 [Hom...
FCAMR                 0.066   Fc receptor, IgA, IgM, high affinity isoform 1 [Hom...
FCAMR                 0.066   Fc receptor, IgA, IgM, high affinity isoform 1 [Hom...
TREML4                0.059   triggering receptor expressed on myeloid cells-like ...
ADORA3                0.057   adenosine A3 receptor isoform 3 
ADORA3                0.057   adenosine A3 receptor isoform 1 
TREM2                 0.050   triggering receptor expressed on myeloid cells 2 prec...
TREML1                0.048   triggering receptor expressed on myeloid cells-like ...
FAIM3                 0.043   Fas apoptotic inhibitory molecule 3 isoform a [Homo...
FAIM3                 0.043   Fas apoptotic inhibitory molecule 3 isoform a 
VSIG2                 0.041   V-set and immunoglobulin domain containing 2 
TREML2                0.034   triggering receptor expressed on myeloid cells-like...
TIMD4                 0.032   T-cell immunoglobulin and mucin domain containing 4...
TIMD4                 0.032   T-cell immunoglobulin and mucin domain containing 4...
TYRO3                 0.029   TYRO3 protein tyrosine kinase 
HAVCR1                0.025   hepatitis A virus cellular receptor 1 
HAVCR1                0.025   hepatitis A virus cellular receptor 1 
CD7                   0.025   CD7 antigen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press