Search of human proteins with 14150124

Search of human proteins with 14150124

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14150124 LLP homolog [Homo sapiens]
         (129 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14150124 LLP homolog [Homo sapiens]                                261   1e-70
gi|169164505 PREDICTED: similar to LLP homolog [Homo sapiens]         248   1e-66
gi|88959164 PREDICTED: similar to LLP homolog [Homo sapiens]          248   1e-66
gi|88953955 PREDICTED: similar to LLP homolog [Homo sapiens]          248   1e-66
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]            36   0.007
gi|117553584 adaptor-related protein complex 3, delta 1 subunit ...    35   0.021
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa...    34   0.028
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho...    34   0.037
gi|13129094 ashwin [Homo sapiens]                                      34   0.037
gi|147905592 coiled-coil domain containing 102B [Homo sapiens]         33   0.081
gi|148233522 coiled-coil domain containing 102B [Homo sapiens]         33   0.081
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap...    32   0.14 
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap...    32   0.14 
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]      31   0.24 
gi|41152076 steroid-sensitive protein 1 [Homo sapiens]                 31   0.24 
gi|41152074 steroid-sensitive protein 1 [Homo sapiens]                 31   0.24 
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]           31   0.24 
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]           31   0.24 
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]             31   0.24 
gi|21450705 leucine rich repeat containing 45 [Homo sapiens]           31   0.24 
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]            31   0.31 
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]    31   0.31 
gi|55741709 RNA binding motif protein 25 [Homo sapiens]                30   0.40 
gi|148612813 sickle tail isoform 2 [Homo sapiens]                      30   0.40 
gi|50843820 sickle tail isoform 1 [Homo sapiens]                       30   0.40 
gi|82546830 SEC8 protein isoform a [Homo sapiens]                      30   0.40 
gi|118421089 chromodomain helicase DNA binding protein 2 isoform...    30   0.40 
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr...    30   0.69 
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr...    30   0.69 
gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens]    30   0.69 

>gi|14150124 LLP homolog [Homo sapiens]
          Length = 129

 Score =  261 bits (666), Expect = 1e-70
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQE 60
           MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQE
Sbjct: 1   MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQE 60

Query: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKA 120
           KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKA
Sbjct: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKA 120

Query: 121 VKVAKGLAW 129
           VKVAKGLAW
Sbjct: 121 VKVAKGLAW 129


>gi|169164505 PREDICTED: similar to LLP homolog [Homo sapiens]
          Length = 129

 Score =  248 bits (632), Expect = 1e-66
 Identities = 123/129 (95%), Positives = 125/129 (96%)

Query: 1   MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQE 60
           MAKSL SKWKRKMRAEKRKKNAP+E SRLKSILKLD DVLMKDVQEIATVVVPKPKHCQE
Sbjct: 1   MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60

Query: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKA 120
           KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK K+KAKA
Sbjct: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120

Query: 121 VKVAKGLAW 129
           VKVAKGLAW
Sbjct: 121 VKVAKGLAW 129


>gi|88959164 PREDICTED: similar to LLP homolog [Homo sapiens]
          Length = 129

 Score =  248 bits (632), Expect = 1e-66
 Identities = 123/129 (95%), Positives = 125/129 (96%)

Query: 1   MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQE 60
           MAKSL SKWKRKMRAEKRKKNAP+E SRLKSILKLD DVLMKDVQEIATVVVPKPKHCQE
Sbjct: 1   MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60

Query: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKA 120
           KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK K+KAKA
Sbjct: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120

Query: 121 VKVAKGLAW 129
           VKVAKGLAW
Sbjct: 121 VKVAKGLAW 129


>gi|88953955 PREDICTED: similar to LLP homolog [Homo sapiens]
          Length = 129

 Score =  248 bits (632), Expect = 1e-66
 Identities = 123/129 (95%), Positives = 125/129 (96%)

Query: 1   MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQE 60
           MAKSL SKWKRKMRAEKRKKNAP+E SRLKSILKLD DVLMKDVQEIATVVVPKPKHCQE
Sbjct: 1   MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60

Query: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKA 120
           KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK K+KAKA
Sbjct: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120

Query: 121 VKVAKGLAW 129
           VKVAKGLAW
Sbjct: 121 VKVAKGLAW 129


>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 275

 Score = 36.2 bits (82), Expect = 0.007
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 3   KSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKM 62
           K  R K +RK + EK+K+   +   R +   K   +   ++ Q        + K  ++K 
Sbjct: 87  KERREKERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRER---KRKKRRKKKR 143

Query: 63  QCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAK 119
           + E K EK+  K E   K+ KK   ++  +     N+++RK+ + ++E+R+ K + K
Sbjct: 144 RKERKREKERGKRERKRKKRKKEEREKKRE----RNRKERKKERERKERRERKKERK 196



 Score = 31.6 bits (70), Expect = 0.18
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 3   KSLRSKWKRKMRAEKRKKNAPK-EASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEK 61
           K  R K +++ R +K KK   K E  + +   + + +   K+ +E       K K  +E+
Sbjct: 47  KREREKERKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREKERRKRKKEKKKRER 106

Query: 62  MQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKAV 121
            Q   ++ K   + +   + NK     Q  +      +++++R + KREK +GK + K  
Sbjct: 107 KQRGRRERKKKKERKERERENK-----QRRERKRKKRRKKKRRKERKREKERGKRERKRK 161

Query: 122 KVAK 125
           K  K
Sbjct: 162 KRKK 165



 Score = 27.7 bits (60), Expect = 2.6
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 12/106 (11%)

Query: 10  KRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
           KRK R ++RK+   KE  + K   K   +   +  +E       K +  + K + E K +
Sbjct: 78  KRKEREKQRKERREKERRKRKKEKK-KRERKQRGRRERKKKKERKERERENKQRRERKRK 136

Query: 70  KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGK 115
           K   K     ++ +K              +R+RKR K K+E+R+ K
Sbjct: 137 KRRKKKRRKERKREKE-----------RGKRERKRKKRKKEEREKK 171


>gi|117553584 adaptor-related protein complex 3, delta 1 subunit
           isoform 1 [Homo sapiens]
          Length = 1112

 Score = 34.7 bits (78), Expect = 0.021
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 19/117 (16%)

Query: 3   KSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKM 62
           K    K K K R +++KK   K+A  L   L              A   VP    C++  
Sbjct: 754 KKKEKKHKEKERDKEKKKEKEKKAEDLDFWLS----TTPPPAPAPAPAPVPSTDECEDA- 808

Query: 63  QCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAK 119
           + E + E+DD + +   K++ K               +++K  K K E+ KGK K+K
Sbjct: 809 KTEAQGEEDDAEGQDQDKKSPKP--------------KKKKHRKEKEERTKGKKKSK 851


>gi|84043963 eukaryotic translation initiation factor 5B [Homo
           sapiens]
          Length = 1220

 Score = 34.3 bits (77), Expect = 0.028
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 17/123 (13%)

Query: 6   RSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCE 65
           + K K+K + EK +K   K+    K+ +K   + L K  +E             E+ Q  
Sbjct: 314 KKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEE-------------EERQKR 360

Query: 66  VKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKAVKVAK 125
            ++E+     E + KR ++  L+Q  +      ++Q+++ + +R K++GK   K+ + A+
Sbjct: 361 EEEERIKRLEELEAKRKEEERLEQEKR----ERKKQKEKERKERLKKEGKLLTKSQREAR 416

Query: 126 GLA 128
             A
Sbjct: 417 ARA 419


>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
           sapiens]
          Length = 929

 Score = 33.9 bits (76), Expect = 0.037
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 3   KSLRSKWKRKMRAEKRKKNAPKEASRLKSI-LKLDGDVLMKDVQEIATVVVP--KPKHCQ 59
           K  + K K K R +K K  AP      K + L L        V  +   ++P    K  +
Sbjct: 632 KREKEKVKDKGREDKMKAPAPPLVLPPKELALPLFSPATASRVPAMLPSLLPVLPEKLFE 691

Query: 60  EKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAK 119
           EK + + K++K D K +   K  +K   ++         + + KR + KREK K K K +
Sbjct: 692 EKEKVKEKEKKKDKKEKKKKKEKEKEKKEKE--------REKEKREREKREKEKEKHKHE 743

Query: 120 AVKV 123
            +KV
Sbjct: 744 KIKV 747


>gi|13129094 ashwin [Homo sapiens]
          Length = 232

 Score = 33.9 bits (76), Expect = 0.037
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 69  EKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQ------RKRLKAKREKRKGKSKAKAVK 122
           E+ ++ +ETD++ NK +L D + Q+ I + QR        K ++ KRE+ + K++ K   
Sbjct: 32  EQKNIAVETDVRVNKDSLTDLYVQHAIPLPQRDLPKNRWGKMMEKKREQHEIKNETKRSS 91

Query: 123 VAKGL 127
              GL
Sbjct: 92  TVDGL 96


>gi|147905592 coiled-coil domain containing 102B [Homo sapiens]
          Length = 513

 Score = 32.7 bits (73), Expect = 0.081
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 8/120 (6%)

Query: 3   KSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPK--HCQE 60
           +S  S WK K   E+ K++ PK       +L    D    ++QE++  +  + K  + ++
Sbjct: 289 ESALSLWKWKY--EELKESKPKNVKEFDILLGQHND----EMQELSGNIKEESKSQNSKD 342

Query: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKA 120
           ++ CE++ E + ++ E   + +K+ +L++  Q     N+R + ++K   E    K++  A
Sbjct: 343 RVICELRAELERLQAENTSEWDKREILEREKQGLERENRRLKIQVKEMEELLDKKNRLSA 402



 Score = 26.2 bits (56), Expect = 7.6
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 20/91 (21%)

Query: 7   SKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEV 66
           S+W ++   E+ K+   +E  RLK        + +K+++E+            +K +   
Sbjct: 361 SEWDKREILEREKQGLERENRRLK--------IQVKEMEEL----------LDKKNRLSA 402

Query: 67  KDEKDDMKM-ETDIKRNKKTLLD-QHGQYPI 95
             +  D KM + D++   + LL+ QH  Y +
Sbjct: 403 NSQSPDFKMSQIDLQEKNQELLNLQHAYYKL 433


>gi|148233522 coiled-coil domain containing 102B [Homo sapiens]
          Length = 513

 Score = 32.7 bits (73), Expect = 0.081
 Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 8/120 (6%)

Query: 3   KSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPK--HCQE 60
           +S  S WK K   E+ K++ PK       +L    D    ++QE++  +  + K  + ++
Sbjct: 289 ESALSLWKWKY--EELKESKPKNVKEFDILLGQHND----EMQELSGNIKEESKSQNSKD 342

Query: 61  KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKA 120
           ++ CE++ E + ++ E   + +K+ +L++  Q     N+R + ++K   E    K++  A
Sbjct: 343 RVICELRAELERLQAENTSEWDKREILEREKQGLERENRRLKIQVKEMEELLDKKNRLSA 402



 Score = 26.2 bits (56), Expect = 7.6
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 20/91 (21%)

Query: 7   SKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEV 66
           S+W ++   E+ K+   +E  RLK        + +K+++E+            +K +   
Sbjct: 361 SEWDKREILEREKQGLERENRRLK--------IQVKEMEEL----------LDKKNRLSA 402

Query: 67  KDEKDDMKM-ETDIKRNKKTLLD-QHGQYPI 95
             +  D KM + D++   + LL+ QH  Y +
Sbjct: 403 NSQSPDFKMSQIDLQEKNQELLNLQHAYYKL 433


>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
          Length = 1758

 Score = 32.0 bits (71), Expect = 0.14
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 10   KRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCE-VKD 68
            +R  R+E   K A +E  +  +          KD +   T      K  +E  + + VK+
Sbjct: 1016 ERSPRSEPPIKKAKEETPKTDNTKSSSSS--QKDEKITGTPRKAHSKSAKEHQETKPVKE 1073

Query: 69   EKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKAV 121
            EK       D+K  K T  ++  + P      + K L  K EKRK K++ K V
Sbjct: 1074 EKVKKDYSKDVKSEKLTTKEEKAKKP----NEKNKPLDNKGEKRKRKTEEKGV 1122


>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
          Length = 1792

 Score = 32.0 bits (71), Expect = 0.14
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 10   KRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCE-VKD 68
            +R  R+E   K A +E  +  +          KD +   T      K  +E  + + VK+
Sbjct: 1050 ERSPRSEPPIKKAKEETPKTDNTKSSSSS--QKDEKITGTPRKAHSKSAKEHQETKPVKE 1107

Query: 69   EKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKAV 121
            EK       D+K  K T  ++  + P      + K L  K EKRK K++ K V
Sbjct: 1108 EKVKKDYSKDVKSEKLTTKEEKAKKP----NEKNKPLDNKGEKRKRKTEEKGV 1156


>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
          Length = 1217

 Score = 31.2 bits (69), Expect = 0.24
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 10  KRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
           + K+     K+    E SR     + D    M+D++     +  K    +E+ +    + 
Sbjct: 236 RAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAER 295

Query: 70  KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKAVKVAK 125
           ++ +K  T ++   K L D+     +  N  QRKRL  +R+K   K + K  ++A+
Sbjct: 296 QEQIKQRTKLELKAKDLQDE-----LAGNSEQRKRLLKERQKLLEKIEEKQKELAE 346


>gi|41152076 steroid-sensitive protein 1 [Homo sapiens]
          Length = 950

 Score = 31.2 bits (69), Expect = 0.24
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 23  PKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQC------EVKDEKDDMKME 76
           PK A       K    +L  + +E   +  P     ++++Q       + K+ K   K+E
Sbjct: 485 PKPAKEKPPKKKAQDKILSNEYEEKYDLSRPTASQLEDELQVGNVPLKKAKESKKHEKLE 544

Query: 77  TDIKRNKKTLLDQHGQYPIWMNQRQRK-RLKAKREKRKGKSK 117
              K  KK + +++    +   ++ +K   K+K+EK K K K
Sbjct: 545 KPEKEKKKKMKNENADKLLKSEKQMKKSEKKSKQEKEKSKKK 586


>gi|41152074 steroid-sensitive protein 1 [Homo sapiens]
          Length = 950

 Score = 31.2 bits (69), Expect = 0.24
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 23  PKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQC------EVKDEKDDMKME 76
           PK A       K    +L  + +E   +  P     ++++Q       + K+ K   K+E
Sbjct: 485 PKPAKEKPPKKKAQDKILSNEYEEKYDLSRPTASQLEDELQVGNVPLKKAKESKKHEKLE 544

Query: 77  TDIKRNKKTLLDQHGQYPIWMNQRQRK-RLKAKREKRKGKSK 117
              K  KK + +++    +   ++ +K   K+K+EK K K K
Sbjct: 545 KPEKEKKKKMKNENADKLLKSEKQMKKSEKKSKQEKEKSKKK 586


>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
          Length = 2426

 Score = 31.2 bits (69), Expect = 0.24
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 13/104 (12%)

Query: 23   PKEASRLKSILK-LDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKR 81
            PK+  RL S+   ++G +L  DV    +   P      E+      +EKDD ++   +K 
Sbjct: 1739 PKDMERLTSLRAGIEGPLLASDVGRDRSAASPVVSSMPERASESSSEEKDDYEIFVKVK- 1797

Query: 82   NKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKAVKVAK 125
                  D H +     +++ + R K ++EK++  S     K +K
Sbjct: 1798 ------DTHEK-----SKKNKNRDKGEKEKKRDSSLRSRSKRSK 1830


>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
          Length = 2303

 Score = 31.2 bits (69), Expect = 0.24
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 13/104 (12%)

Query: 23   PKEASRLKSILK-LDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKR 81
            PK+  RL S+   ++G +L  DV    +   P      E+      +EKDD ++   +K 
Sbjct: 1739 PKDMERLTSLRAGIEGPLLASDVGRDRSAASPVVSSMPERASESSSEEKDDYEIFVKVK- 1797

Query: 82   NKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKAVKVAK 125
                  D H +     +++ + R K ++EK++  S     K +K
Sbjct: 1798 ------DTHEK-----SKKNKNRDKGEKEKKRDSSLRSRSKRSK 1830


>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
          Length = 352

 Score = 31.2 bits (69), Expect = 0.24
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 3   KSLRSKWKRKMR-AEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEK 61
           K  RS+ + + R +EKRKK + K+ SR  S     G    K           K K  +  
Sbjct: 131 KRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQG---RKASTAPGAEERSKQKARRRT 187

Query: 62  MQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKAV 121
                          +    +  +  D   +   + ++R++K+ K K+ K+KGK KA+A 
Sbjct: 188 RSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQ 247

Query: 122 KV 123
           +V
Sbjct: 248 QV 249


>gi|21450705 leucine rich repeat containing 45 [Homo sapiens]
          Length = 670

 Score = 31.2 bits (69), Expect = 0.24
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 12  KMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKD 71
           KMRA + ++    E  R +  L+    + +K+V+ +   +    K  QE++Q   + E  
Sbjct: 405 KMRAIQAEERLDMEKRRCRQSLEDSESLRIKEVEHMTRHLEESEKAMQERVQ---RLEAA 461

Query: 72  DMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKR 112
            + +E ++ R K   L + G       Q + + +KAK + R
Sbjct: 462 RLSLEEELSRVKAAALSERG-------QAEEELIKAKSQAR 495


>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 30.8 bits (68), Expect = 0.31
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 21/113 (18%)

Query: 10  KRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
           ++K R EK  K   ++  R K   K  G           T    K +  +E+ + E + E
Sbjct: 97  RKKRRREKENKEGEEKEKRKKKEKKERG----------RTSKEGKERERKEERKREERKE 146

Query: 70  KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKAVK 122
           ++  K E + +R +K              +R+RK++  K E+RK K + +  K
Sbjct: 147 RERKKEEREKERERKE-----------RKKRERKQVGEKEEERKEKERKERKK 188



 Score = 27.7 bits (60), Expect = 2.6
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 27/110 (24%)

Query: 10  KRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
           K + R E+RK+   KE  R K   + + +               K +  +E+ Q   K+E
Sbjct: 131 KERERKEERKREERKERERKKEEREKERE--------------RKERKKRERKQVGEKEE 176

Query: 70  KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAK 119
           +   K   + K+ ++             N+++RK+ + ++E+R+ K + K
Sbjct: 177 ERKEKERKERKKRER-------------NRKERKKERERKERRERKKERK 213



 Score = 27.7 bits (60), Expect = 2.6
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 10  KRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
           KR+ R E+ +K   +E  R +   K      + + +E       K +  +E+ + E K E
Sbjct: 140 KREERKERERKKEEREKERERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKE 199

Query: 70  KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKAVK 122
           ++  K   + K+ +K   ++         +RQ+ R    REK +GK + K  K
Sbjct: 200 RE-RKERRERKKERKKKEERK-------KERQKDRQTNWREKERGKRERKERK 244



 Score = 25.8 bits (55), Expect = 9.9
 Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 11/87 (12%)

Query: 40  LMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQ 99
           L  ++Q ++   + KP   Q   Q E+++ + +++   + K+ +++             +
Sbjct: 13  LNTELQMVSCSHISKPC-TQPGWQSEIREREREIETRKEGKKERESE----------RKK 61

Query: 100 RQRKRLKAKREKRKGKSKAKAVKVAKG 126
            +R+R K KRE+ K + + +  K  KG
Sbjct: 62  ERREREKRKREREKERKRERGKKEKKG 88


>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
          Length = 1498

 Score = 30.8 bits (68), Expect = 0.31
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 24   KEASRLKSILKL---DGDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIK 80
            +E   LK  L L    G   ++ +Q++   V  + +  QE +    KD+       +++K
Sbjct: 1298 REIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELK 1357

Query: 81   RNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKAVKV 123
             N KTLL Q+ Q  + + +   K  K  + +    + A  +K+
Sbjct: 1358 NNMKTLLQQNQQLKLDLRRGAAKTRKEPKGEASSSNPATPIKI 1400


>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
          Length = 843

 Score = 30.4 bits (67), Expect = 0.40
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 3   KSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKM 62
           K  R   K   R E+R++   KEA RLK  L+ D D    D +      + K    +EK 
Sbjct: 470 KKTREYEKEAEREEERRREMAKEAKRLKEFLE-DYDDDRDDPKYYRGSALQKRLRDREKE 528

Query: 63  QCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKRE 110
                DE+D  + + +++  ++ LL +    P    QR  +  + +R+
Sbjct: 529 M--EADERDRKREKEELEEIRQRLLAEGHPDPDAELQRMEQEAERRRQ 574


>gi|148612813 sickle tail isoform 2 [Homo sapiens]
          Length = 1264

 Score = 30.4 bits (67), Expect = 0.40
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 23  PKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVK 67
           P+ A+ L S++ L   ++ K V   +T  +PK +  +E+MQ   K
Sbjct: 444 PRSAAGLSSLVDLGPPLMEKQVFAYSTATIPKDRETRERMQAMEK 488


>gi|50843820 sickle tail isoform 1 [Homo sapiens]
          Length = 1943

 Score = 30.4 bits (67), Expect = 0.40
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 23  PKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVK 67
           P+ A+ L S++ L   ++ K V   +T  +PK +  +E+MQ   K
Sbjct: 524 PRSAAGLSSLVDLGPPLMEKQVFAYSTATIPKDRETRERMQAMEK 568


>gi|82546830 SEC8 protein isoform a [Homo sapiens]
          Length = 974

 Score = 30.4 bits (67), Expect = 0.40
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 39  VLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMN 98
           V +++ ++  T         +EK+       KDD     DI R  K+L       P WMN
Sbjct: 610 VKLQEYKDTCTAAYRGIVQSEEKLVISASWAKDD-----DISRLLKSL-------PNWMN 657

Query: 99  QRQRKRLKAKREKRK 113
             Q K+L+ KRE+ +
Sbjct: 658 MAQPKQLRPKREEEE 672


>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
            [Homo sapiens]
          Length = 1828

 Score = 30.4 bits (67), Expect = 0.40
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 8    KWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQ-CEV 66
            K  RK   +K      +EA   K   ++  +  +  ++E   + +  P+H     +  EV
Sbjct: 1319 KLLRKGLEKKGAVTGGEEAKLKKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEV 1378

Query: 67   KD---EKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK---GKSKAKA 120
            KD   EK  MK +   K NK+    Q          ++RK+ K K+EK K    KS +K+
Sbjct: 1379 KDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKS 1438


>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
           repeats isoform 2 [Homo sapiens]
          Length = 1403

 Score = 29.6 bits (65), Expect = 0.69
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 11/54 (20%)

Query: 33  LKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKRNKKTL 86
           L L+ D L KDV  + TV VP  KH           EK+ + ++++I   KK L
Sbjct: 772 LLLENDSLSKDVSRLETVFVPPEKH-----------EKEIIALKSNIVELKKQL 814


>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
           repeats isoform 1 [Homo sapiens]
          Length = 1416

 Score = 29.6 bits (65), Expect = 0.69
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 11/54 (20%)

Query: 33  LKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKRNKKTL 86
           L L+ D L KDV  + TV VP  KH           EK+ + ++++I   KK L
Sbjct: 785 LLLENDSLSKDVSRLETVFVPPEKH-----------EKEIIALKSNIVELKKQL 827


>gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens]
          Length = 518

 Score = 29.6 bits (65), Expect = 0.69
 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 15/121 (12%)

Query: 11  RKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEK 70
           R+ R+ K+    P E    +   KL G V             P  KH +   + + K+E+
Sbjct: 250 RESRSHKQHSVVPLEEVVQEYKAKLQGHV------------EPLRKHLEAVQKMKAKEER 297

Query: 71  DDMKMETDIKRNKKTLLDQHGQYPIWMNQRQ---RKRLKAKREKRKGKSKAKAVKVAKGL 127
              ++++ +K     +  + G+   ++ + Q    +RL+   E + G++ A A ++A+  
Sbjct: 298 RVTELKSQMKSELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAASRLAEQA 357

Query: 128 A 128
           A
Sbjct: 358 A 358


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.127    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,453,008
Number of Sequences: 37866
Number of extensions: 180519
Number of successful extensions: 1093
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 235
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.