Guide to the Human Genome
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Name: LOC646644 Sequence: fasta or formatted (129aa) NCBI GI: 88953955
Description:

PREDICTED: similar to LLP homolog

Not currently referenced in the text

Other entries for this name:
alt mRNA {129aa} PREDICTED: similar to LLP homolog
alt mRNA {129aa} PREDICTED: similar to LLP homolog
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0          9           1
 C cysteine            1.6          2           1
 D aspartate           7.0          9           3
 E glutamate           7.8         10           2
 F phenylalanine       0.0          0           0
 G glycine             1.6          2           1
 H histidine           1.6          2           1
 I isoleucine          3.1          4           1
 K lysine             22.5         29           2
 L leucine             7.0          9           2
 M methionine          5.4          7           1
 N asparagine          3.1          4           1
 P proline             3.1          4           1
 Q glutamine           5.4          7           1
 R arginine            7.8         10           1
 S serine              3.1          4           1
 T threonine           2.3          3           1
 V valine              7.0          9           3
 W tryptophan          3.1          4           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to LLP homolog 
LOC646644             1.000   PREDICTED: similar to LLP homolog 
LOC646644             1.000   PREDICTED: similar to LLP homolog 
LLPH                  0.937   LLP homolog 
CCDC102B              0.055   coiled-coil domain containing 102B 
CCDC102B              0.055   coiled-coil domain containing 102B 
TAF3                  0.055   RNA polymerase II transcription factor TAFII140 [Ho...
C2orf49               0.046   ashwin 
C1orf65               0.038   hypothetical protein LOC164127 
LRRC45                0.038   leucine rich repeat containing 45 
RBBP6                 0.038   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.038   retinoblastoma-binding protein 6 isoform 1 
LOC100133599          0.034   PREDICTED: hypothetical protein 
LOC100133599          0.034   PREDICTED: hypothetical protein 
GOLGA3                0.034   Golgi autoantigen, golgin subfamily a, 3 
CCDC121               0.034   coiled-coil domain containing 121 isoform 2 
CCDC121               0.034   coiled-coil domain containing 121 isoform 1 
CCDC121               0.034   coiled-coil domain containing 121 isoform 3 
ANKHD1                0.034   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.034   ANKHD1-EIF4EBP3 protein 
UTP3                  0.034   UTP3, small subunit processome component 
SMC3                  0.029   structural maintenance of chromosomes 3 
EIF5B                 0.029   eukaryotic translation initiation factor 5B 
MAN1A2                0.029   mannosidase, alpha, class 1A, member 2 
LOC400352             0.029   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.029   PREDICTED: similar to Putative golgin subfamily A m...
MYH10                 0.029   myosin, heavy polypeptide 10, non-muscle 
CCDC80                0.029   steroid-sensitive protein 1 
CCDC80                0.029   steroid-sensitive protein 1 
PPIG                  0.029   peptidylprolyl isomerase G 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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