Guide to the Human Genome
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Name: CHCHD5 Sequence: fasta or formatted (110aa) NCBI GI: 14150070
Description:

coiled-coil-helix-coiled-coil-helix domain containing 5

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         16           2
 C cysteine            7.3          8           1
 D aspartate           0.9          1           1
 E glutamate          10.0         11           2
 F phenylalanine       2.7          3           1
 G glycine             2.7          3           1
 H histidine           2.7          3           1
 I isoleucine          3.6          4           2
 K lysine              1.8          2           1
 L leucine             5.5          6           1
 M methionine          2.7          3           1
 N asparagine          1.8          2           1
 P proline             7.3          8           2
 Q glutamine          11.8         13           1
 R arginine            8.2          9           2
 S serine              5.5          6           2
 T threonine           2.7          3           1
 V valine              4.5          5           1
 W tryptophan          0.9          1           1
 Y tyrosine            2.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil-helix-coiled-coil-helix domain containin... 
ALOX12                0.029   arachidonate 12-lipoxygenase 
CHCHD1                0.014   coiled-coil-helix-coiled-coil-helix domain containin...
C19orf51              0.014   hypothetical protein LOC352909 
DEF6                  0.010   differentially expressed in FDCP 6 homolog 
PAXIP1                0.010   PAX interacting protein 1 
PARP14                0.010   poly (ADP-ribose) polymerase family, member 14 [Hom...
TTN                   0.010   titin isoform N2-A 
TTN                   0.010   titin isoform novex-2 
TTN                   0.010   titin isoform novex-1 
TTN                   0.010   titin isoform N2-B 
LOC100128362          0.010   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.010   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.010   PREDICTED: similar to protein phosphatase 2, cataly...
NDUFA8                0.010   NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8...
LOC100291176          0.005   PREDICTED: hypothetical protein XP_002346954 
HLA-B                 0.005   major histocompatibility complex, class I, B precurs...
CHERP                 0.005   calcium homeostasis endoplasmic reticulum protein [...
AZI1                  0.005   5-azacytidine induced 1 isoform b 
AZI1                  0.005   5-azacytidine induced 1 isoform a 
C17orf89              0.005   hypothetical protein LOC284184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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