Guide to the Human Genome
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Name: C17orf89 Sequence: fasta or formatted (74aa) NCBI GI: 147900223
Description:

hypothetical protein LOC284184

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            23.0         17           4
 C cysteine            6.8          5           1
 D aspartate           1.4          1           1
 E glutamate           6.8          5           1
 F phenylalanine       5.4          4           1
 G glycine            10.8          8           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              4.1          3           2
 L leucine             6.8          5           1
 M methionine          1.4          1           1
 N asparagine          1.4          1           1
 P proline             2.7          2           1
 Q glutamine           1.4          1           1
 R arginine           12.2          9           1
 S serine              6.8          5           1
 T threonine           2.7          2           1
 V valine              4.1          3           1
 W tryptophan          1.4          1           1
 Y tyrosine            1.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC284184 
LOC100131244          0.016   PREDICTED: similar to kinase D-interacting substrat...
LOC100291587          0.016   PREDICTED: similar to Putative ATP-dependent RNA he...
LOC100131244          0.016   PREDICTED: similar to kinase D-interacting substrat...
LOC100131244          0.016   PREDICTED: similar to kinase D-interacting substrat...
HGFAC                 0.016   HGF activator preproprotein 
CHCHD5                0.008   coiled-coil-helix-coiled-coil-helix domain containin...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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