Guide to the Human Genome
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Name: C19orf51 Sequence: fasta or formatted (588aa) NCBI GI: 73476319
Description:

hypothetical protein LOC352909

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         61           2
 C cysteine            1.4          8           1
 D aspartate           4.4         26           2
 E glutamate           7.3         43           2
 F phenylalanine       3.9         23           2
 G glycine             8.5         50           2
 H histidine           2.7         16           2
 I isoleucine          1.7         10           1
 K lysine              1.9         11           1
 L leucine            12.1         71           3
 M methionine          1.2          7           1
 N asparagine          2.6         15           2
 P proline             7.7         45           2
 Q glutamine           4.4         26           2
 R arginine            8.3         49           3
 S serine              7.3         43           2
 T threonine           4.4         26           2
 V valine              6.3         37           1
 W tryptophan          2.2         13           2
 Y tyrosine            1.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC352909 
ANKRD17               0.015   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.012   ankyrin repeat domain protein 17 isoform b 
TTC28                 0.009   tetratricopeptide repeat domain 28 
POM121                0.009   nuclear pore membrane protein 121 
LOC100288540          0.008   PREDICTED: hypothetical protein XP_002342775 
SH2B2                 0.008   SH2B adaptor protein 2 
ESPL1                 0.007   separase 
ADAMTSL3              0.006   ADAMTS-like 3 precursor 
WHAMM                 0.006   WAS protein homolog associated with actin, golgi me...
SETD1B                0.006   SET domain containing 1B 
LOC100132839          0.006   PREDICTED: hypothetical protein 
LOC100132839          0.006   PREDICTED: hypothetical protein 
NACA                  0.006   nascent polypeptide-associated complex alpha subuni...
WDR17                 0.005   WD repeat domain 17 isoform 2 
WDR17                 0.005   WD repeat domain 17 isoform 1 
RGL4                  0.005   ral guanine nucleotide dissociation stimulator-like ...
LOC388279             0.005   PREDICTED: hypothetical protein 
DGKK                  0.005   diacylglycerol kinase kappa 
TEX13A                0.005   testis expressed sequence 13A 
C20orf151             0.005   hypothetical protein LOC140893 
LOC729991-MEF2B       0.004   myocyte enhancer factor 2B isoform b 
LOC646862             0.004   PREDICTED: hypothetical protein LOC646862 
NACAD                 0.004   PREDICTED: NAC alpha domain containing 
LOC646862             0.004   PREDICTED: hypothetical protein LOC646862 
NACAD                 0.004   PREDICTED: NAC alpha domain containing 
LOC646862             0.004   PREDICTED: hypothetical protein LOC646862 
NACAD                 0.004   PREDICTED: NAC alpha domain containing 
TRIM28                0.004   tripartite motif-containing 28 protein 
MTF1                  0.004   metal-regulatory transcription factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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