Search of human proteins with 8922534

Search of human proteins with 8922534

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8922534 RNA methyltransferase like 1 [Homo sapiens]
         (420 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8922534 RNA methyltransferase like 1 [Homo sapiens]                845   0.0  
gi|40068479 mitochondrial rRNA methyltransferase 1 homolog [Homo...    43   6e-04
gi|22749257 hypothetical protein LOC165100 [Homo sapiens]              33   0.63 
gi|239746922 PREDICTED: similar to cancer/testis antigen family ...    32   1.1  
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]        31   1.8  
gi|58533172 zinc finger, matrin type 1 isoform 3 [Homo sapiens]        31   1.8  
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]     31   2.4  
gi|73747844 ligase III, DNA, ATP-dependent isoform beta precurso...    30   3.1  
gi|239751067 PREDICTED: hypothetical protein XP_002347693 [Homo ...    30   4.1  
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap...    30   4.1  
gi|41322923 plectin 1 isoform 11 [Homo sapiens]                        30   5.4  
gi|41322914 plectin 1 isoform 10 [Homo sapiens]                        30   5.4  
gi|41322919 plectin 1 isoform 8 [Homo sapiens]                         30   5.4  
gi|41322910 plectin 1 isoform 7 [Homo sapiens]                         30   5.4  
gi|41322916 plectin 1 isoform 6 [Homo sapiens]                         30   5.4  
gi|41322908 plectin 1 isoform 3 [Homo sapiens]                         30   5.4  
gi|41322912 plectin 1 isoform 2 [Homo sapiens]                         30   5.4  
gi|47607492 plectin 1 isoform 1 [Homo sapiens]                         30   5.4  
gi|40548408 p30 DBC protein [Homo sapiens]                             29   7.0  
gi|24432106 p30 DBC protein [Homo sapiens]                             29   7.0  
gi|19923142 karyopherin beta 1 [Homo sapiens]                          29   7.0  
gi|156104891 general transcription factor IIF, polypeptide 1, 74...    29   7.0  
gi|148747351 protein kinase C and casein kinase substrate in neu...    29   7.0  
gi|50727002 pseudouridylate synthase 7 homolog [Homo sapiens]          29   7.0  
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap...    29   9.1  
gi|109150431 ring finger protein 31 [Homo sapiens]                     29   9.1  
gi|51944966 hydrogen/potassium-exchanging ATPase 4A [Homo sapiens]     29   9.1  
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa...    29   9.1  
gi|15812198 F-box only protein 2 [Homo sapiens]                        29   9.1  

>gi|8922534 RNA methyltransferase like 1 [Homo sapiens]
          Length = 420

 Score =  845 bits (2182), Expect = 0.0
 Identities = 420/420 (100%), Positives = 420/420 (100%)

Query: 1   MAALVRPARFVVRPLLQVVQAWDLDARRWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRK 60
           MAALVRPARFVVRPLLQVVQAWDLDARRWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRK
Sbjct: 1   MAALVRPARFVVRPLLQVVQAWDLDARRWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRK 60

Query: 61  APSEASAQEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQ 120
           APSEASAQEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQ
Sbjct: 61  APSEASAQEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQ 120

Query: 121 GKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIKVKFEDIKDWSDLV 180
           GKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIKVKFEDIKDWSDLV
Sbjct: 121 GKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIKVKFEDIKDWSDLV 180

Query: 181 TPQGIMGIFAKPDHVKMTYPKTQLQHSLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLL 240
           TPQGIMGIFAKPDHVKMTYPKTQLQHSLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLL
Sbjct: 181 TPQGIMGIFAKPDHVKMTYPKTQLQHSLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLL 240

Query: 241 TKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSN 300
           TKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSN
Sbjct: 241 TKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSN 300

Query: 301 KASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETY 360
           KASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETY
Sbjct: 301 KASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETY 360

Query: 361 GVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAEDLSRDRSYH 420
           GVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAEDLSRDRSYH
Sbjct: 361 GVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAEDLSRDRSYH 420


>gi|40068479 mitochondrial rRNA methyltransferase 1 homolog [Homo
           sapiens]
          Length = 353

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 41/202 (20%)

Query: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINNL 269
           L L+ D ++DP N G +LRSA   G  KV+ ++       P V ++  GA   M +++  
Sbjct: 146 LWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGA---MEVMD-- 200

Query: 270 EWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGA 329
                         V+  D+   + Q +     +  GW+    V         ED ++  
Sbjct: 201 --------------VFSTDDLTGFLQTK-----AQQGWLVAGTV----GCPSTEDPQSS- 236

Query: 330 SQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLE---SLQLAESTGGKRLLIPVVPGV 386
                  + + S      E P  +V+G E  G+S E   S QL  +   +R L    PG+
Sbjct: 237 ------EIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQL---PPGL 287

Query: 387 DSLNSAMAASILLFEGKRQLRG 408
           +SLN ++AA ILL     Q +G
Sbjct: 288 ESLNVSVAAGILLHSICSQRKG 309


>gi|22749257 hypothetical protein LOC165100 [Homo sapiens]
          Length = 395

 Score = 32.7 bits (73), Expect = 0.63
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 13/69 (18%)

Query: 21  AWDLDARRWVRALRRSPVKVVFPSGEVVEQKRA-----PGKQPRKAPSEASAQEQR---- 71
           AWD    R V+  R S   VVFPS  + + K +     P ++P  APS  SA+ Q     
Sbjct: 107 AWD----RQVQDARTSQSLVVFPSHLLGKDKMSQMASVPEREPESAPSAPSAELQSTQHM 162

Query: 72  EKQPLEESA 80
           E QP+E  A
Sbjct: 163 EAQPVESDA 171


>gi|239746922 PREDICTED: similar to cancer/testis antigen family
           147, member B1 isoform 2 [Homo sapiens]
          Length = 294

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 46  EVVEQKRAPGKQP-RKAPSEASAQEQREKQPLEESASRAPSTWEES 90
           ++ E  R P ++P  + P+E +A+E+  ++  EE A   P+  EES
Sbjct: 196 DLAEMAREPAEEPAEEKPTEEAAEEELAEEAAEEPAKEEPAAEEES 241


>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
          Length = 638

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 23  DLDARRWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRKAPSEASAQEQR-EKQPLEESAS 81
           DLD  + +R  +R   +V   SG++  +K+   K+    PSE   ++ R EK+   E  +
Sbjct: 569 DLDKDKSIRQRKREEDRVKVSSGKLKHRKK---KKSHDVPSEKEERKHRKEKKKSVEERT 625

Query: 82  RAPSTWEESGLRY 94
                W+ES L +
Sbjct: 626 EEEMLWDESILGF 638


>gi|58533172 zinc finger, matrin type 1 isoform 3 [Homo sapiens]
          Length = 467

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 23  DLDARRWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRKAPSEASAQEQR-EKQPLEESAS 81
           DLD  + +R  +R   +V   SG++  +K+   K+    PSE   ++ R EK+   E  +
Sbjct: 398 DLDKDKSIRQRKREEDRVKVSSGKLKHRKK---KKSHDVPSEKEERKHRKEKKKSVEERT 454

Query: 82  RAPSTWEESGLRY 94
                W+ES L +
Sbjct: 455 EEEMLWDESILGF 467


>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
          Length = 1020

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 35  RSPVKVVFPSGEVVEQKRAPGKQPRKAPSEASAQEQRE-KQPLE-ESASRAPSTWEESGL 92
           +SP +V  P     E+ ++P K+  K+P EA + E+ E K P E +S  +A S  +E   
Sbjct: 539 KSPAEVKSP-----EKAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAK 593

Query: 93  RYDKAYPGDRRLSSVMTIVKS 113
              +A   ++  S V    KS
Sbjct: 594 SPAEAKSPEKAKSPVKEEAKS 614


>gi|73747844 ligase III, DNA, ATP-dependent isoform beta precursor
           [Homo sapiens]
          Length = 949

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 44  SGEVVEQKRAPGKQP--RKAPSEASAQEQREKQPLEESASR-------APSTWEESGLRY 94
           +G   E+ + P      RKAPS+ SA  ++ +  L  S S+        PS  +      
Sbjct: 850 TGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVGEKLA 909

Query: 95  DKAYP---GDRRLSSVMTI--VKSRPFREKQGKILLEGRR 129
            K+ P   G++R ++  T+   K RP  E++G+ +  GRR
Sbjct: 910 TKSSPVKVGEKRKAADETLCQTKRRPASEQRGRTVPAGRR 949


>gi|239751067 PREDICTED: hypothetical protein XP_002347693 [Homo
           sapiens]
          Length = 132

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 54  PGKQPRKAPSEASAQEQREKQPLEESASRAPSTWEESGLRYD 95
           PGKQ  K P E  A+E+ E++  EE         +E   +Y+
Sbjct: 74  PGKQDTKMPGEQQAEEEEEEEMQEEMVLLVKGEEDEGEEKYE 115


>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
           sapiens]
          Length = 666

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 27  RRWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRKAPSEASAQEQREKQPLEESASRAPST 86
           RR  R  RR  V    P         AP  + RKA  E +  E  E+ P E SA  +   
Sbjct: 65  RRRRRPRRRRRVNDAEPGSP-----EAPQGKRRKADGEDAGAESNEEAPGEPSAGSSEEA 119

Query: 87  WEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEG 127
             E      +  PG+R  S+        P  E+    L+ G
Sbjct: 120 PGEPSAGSSEEAPGERSTSASAEAAPDGPALEEAAGPLVPG 160


>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
          Length = 4547

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 68   QEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEG 127
            ++QR++Q +E+   R  ++ EE+  R  +A  G RR    +  ++ +  R +Q ++L E 
Sbjct: 2533 EQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQ--RRQQEELLAEE 2590

Query: 128  RRLISDALK 136
             + + + L+
Sbjct: 2591 NQRLREQLQ 2599


>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
          Length = 4551

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 68   QEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEG 127
            ++QR++Q +E+   R  ++ EE+  R  +A  G RR    +  ++ +  R +Q ++L E 
Sbjct: 2537 EQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQ--RRQQEELLAEE 2594

Query: 128  RRLISDALK 136
             + + + L+
Sbjct: 2595 NQRLREQLQ 2603


>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
          Length = 4547

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 68   QEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEG 127
            ++QR++Q +E+   R  ++ EE+  R  +A  G RR    +  ++ +  R +Q ++L E 
Sbjct: 2533 EQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQ--RRQQEELLAEE 2590

Query: 128  RRLISDALK 136
             + + + L+
Sbjct: 2591 NQRLREQLQ 2599


>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
          Length = 4515

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 68   QEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEG 127
            ++QR++Q +E+   R  ++ EE+  R  +A  G RR    +  ++ +  R +Q ++L E 
Sbjct: 2501 EQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQ--RRQQEELLAEE 2558

Query: 128  RRLISDALK 136
             + + + L+
Sbjct: 2559 NQRLREQLQ 2567


>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
          Length = 4684

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 68   QEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEG 127
            ++QR++Q +E+   R  ++ EE+  R  +A  G RR    +  ++ +  R +Q ++L E 
Sbjct: 2670 EQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQ--RRQQEELLAEE 2727

Query: 128  RRLISDALK 136
             + + + L+
Sbjct: 2728 NQRLREQLQ 2736



 Score = 28.9 bits (63), Expect = 9.1
 Identities = 36/170 (21%), Positives = 68/170 (40%), Gaps = 23/170 (13%)

Query: 35  RSPVKVVFPSGEV--VEQKRAP-GKQPRKAPSEASAQEQREKQPLEESASRAPSTWEESG 91
           R PV +V P+     V+  + P G  P++ P     Q    ++ LEE +   P     + 
Sbjct: 101 RRPVAMVMPARRTPHVQAVQGPLGSPPKRGPLPTEEQRVYRRKELEEVSPETPVVPATTQ 160

Query: 92  LRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISD----------------AL 135
               +  P     +     V+ + F +   K L++ +R ISD                 L
Sbjct: 161 RTLARPGPEPAPATDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVL 220

Query: 136 KAGAVPKMFFFSRLEYLK--ELPVDKL--KGVSLIKVKFEDIKDWSDLVT 181
              ++P+     R   L+  ++ +D L  + V L+ ++ +DI D +  +T
Sbjct: 221 SGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLT 270


>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
          Length = 4525

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 68   QEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEG 127
            ++QR++Q +E+   R  ++ EE+  R  +A  G RR    +  ++ +  R +Q ++L E 
Sbjct: 2511 EQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQ--RRQQEELLAEE 2568

Query: 128  RRLISDALK 136
             + + + L+
Sbjct: 2569 NQRLREQLQ 2577


>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
          Length = 4533

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 68   QEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEG 127
            ++QR++Q +E+   R  ++ EE+  R  +A  G RR    +  ++ +  R +Q ++L E 
Sbjct: 2519 EQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQ--RRQQEELLAEE 2576

Query: 128  RRLISDALK 136
             + + + L+
Sbjct: 2577 NQRLREQLQ 2585


>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
          Length = 4574

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 68   QEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEG 127
            ++QR++Q +E+   R  ++ EE+  R  +A  G RR    +  ++ +  R +Q ++L E 
Sbjct: 2560 EQQRQQQQMEQERQRLVASMEEARRRQHEAEEGVRRKQEELQQLEQQ--RRQQEELLAEE 2617

Query: 128  RRLISDALK 136
             + + + L+
Sbjct: 2618 NQRLREQLQ 2626


>gi|40548408 p30 DBC protein [Homo sapiens]
          Length = 923

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 28  RWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRKAPSEASAQEQREKQPLEESASRAPSTW 87
           R  + L   P KVV P     E ++    +      E + +E+  K+P +E+ +  P+T 
Sbjct: 555 RVYKMLLSLPEKVVSPP----EPEKEEAAKEEATKEEEAIKEEVVKEPKDEAQNEGPATE 610

Query: 88  EESGLRYDKAYP 99
            E+ L+ D   P
Sbjct: 611 SEAPLKEDGLLP 622


>gi|24432106 p30 DBC protein [Homo sapiens]
          Length = 923

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 28  RWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRKAPSEASAQEQREKQPLEESASRAPSTW 87
           R  + L   P KVV P     E ++    +      E + +E+  K+P +E+ +  P+T 
Sbjct: 555 RVYKMLLSLPEKVVSPP----EPEKEEAAKEEATKEEEAIKEEVVKEPKDEAQNEGPATE 610

Query: 88  EESGLRYDKAYP 99
            E+ L+ D   P
Sbjct: 611 SEAPLKEDGLLP 622


>gi|19923142 karyopherin beta 1 [Homo sapiens]
          Length = 876

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 8/95 (8%)

Query: 167 KVKFEDIKDWSDLVTPQGIMGIFAK--------PDHVKMTYPKTQLQHSLPLLLICDNLR 218
           +V  + I+ WS++   +  + I A         P+H    Y K  LQ+ +P+L      +
Sbjct: 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333

Query: 219 DPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVL 253
           D  +          AG   +LL   C D   P VL
Sbjct: 334 DENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 368


>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
           [Homo sapiens]
          Length = 517

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 18/86 (20%), Positives = 35/86 (40%)

Query: 35  RSPVKVVFPSGEVVEQKRAPGKQPRKAPSEASAQEQREKQPLEESASRAPSTWEESGLRY 94
           ++P +   P G   +   +   +  K P E   +E+ +K P  +   R   + EES    
Sbjct: 290 KAPQQEEGPKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSE 349

Query: 95  DKAYPGDRRLSSVMTIVKSRPFREKQ 120
           +     +   +  M   K+ P RE++
Sbjct: 350 ESDIDSEASSALFMAKKKTPPKRERK 375


>gi|148747351 protein kinase C and casein kinase substrate in
           neurons 2 [Homo sapiens]
          Length = 486

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 128 RRLISDALKAGAVPK--MFFFSRLEYLKELPVDKLKGVSLIKVKFEDIKDWSDLVTPQGI 185
           R+L+    + G V K  M F S  E + EL ++     SL+   FE IK+W      + +
Sbjct: 67  RQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVK--ASLMNDDFEKIKNWQKEAFHKQM 124

Query: 186 MGIFAKPDHVKMTYPKTQ 203
           MG F +    +  + K Q
Sbjct: 125 MGGFKETKEAEDGFRKAQ 142


>gi|50727002 pseudouridylate synthase 7 homolog [Homo sapiens]
          Length = 661

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 152 LKELPVDK-LKGVSLIKVKFEDIKDWS--DLVTPQGIMGIFAKPDHVKMTYPKTQLQHSL 208
           LK +P D  LKG +   ++ +D+ ++S  D+V P     +          YPK ++Q + 
Sbjct: 497 LKPVPGDLVLKGATATYIEEDDVNNYSIHDVVMPLPGFDVI---------YPKHKIQEAY 547

Query: 209 PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWE 249
             +L  DNL D  N+   +R  + +G  + ++ +    +WE
Sbjct: 548 REMLTADNL-DIDNMRHKIRDYSLSGAYRKIIIRPQNVSWE 587


>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens]
          Length = 1747

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 23   DLDARRWVRALRRSPVKVVFPSGEVVEQKRA-PGKQPRKAPSEASAQEQREKQPLEESAS 81
            D + R  +  +   P    F +G ++    A PG  P   PS AS +   E  P  ESA 
Sbjct: 1310 DEETREELARIGLVPPPEEFANGVLLATPLAGPGPSPTTVPSPASGKPSSEPPPAPESA- 1368

Query: 82   RAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQGKI 123
             A S  EE+  R   + P     S++ T+        + G++
Sbjct: 1369 -ADSGVEEADTR-SSSDPHLETTSTISTVSSMSTLSSESGEL 1408


>gi|109150431 ring finger protein 31 [Homo sapiens]
          Length = 1072

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 80  ASRAPSTWEESGLRYDKAYPGD-RRLSSVMTIVKSRPFREKQGKILLEGRRLIS---DAL 135
           A  AP  +  S L      PG  RRLS+ +      P +++Q K+  EG +L+S   +  
Sbjct: 441 AQHAPRPYASS-LEKGPPKPGPPRRLSAPLPSSCGDPEKQRQDKMREEGLQLVSMIREGE 499

Query: 136 KAGAVPKMFFFSRLEYL-KELPVDKLK 161
            AGA P+   FS L+Y   E+P+  L+
Sbjct: 500 AAGACPEE-IFSALQYSGTEVPLQWLR 525


>gi|51944966 hydrogen/potassium-exchanging ATPase 4A [Homo sapiens]
          Length = 1035

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 83  APSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVP- 141
           A +T ++SG  +D++    R L  V+T+     F+  Q  + +  R +I DA +   +  
Sbjct: 411 ADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKF 470

Query: 142 -------KMFFFSRLEYLKELPVDKLKGVSLIKVKFEDIKDWSDLVTPQG 184
                   M +  R   + E+P +      L     ED +D   L+  +G
Sbjct: 471 SELTLGNAMGYRDRFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHLLVMKG 520


>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
           sapiens]
          Length = 2715

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 49  EQKRAPG--KQPRKAPSEASAQEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSS 106
           ++KR P   K+PRKA     A+E +E +  ++ A +A    E SG +  K     R  + 
Sbjct: 119 KRKREPKEPKEPRKAKEPKKAKEHKEPKQ-KDGAKKARKPREASGTKEAKE---KRSCTD 174

Query: 107 VMTIVKSRPFREKQGKILLEGRR 129
                KSR   ++QG   +E ++
Sbjct: 175 SAARTKSRKASKEQGPTPVEKKK 197


>gi|15812198 F-box only protein 2 [Homo sapiens]
          Length = 296

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 58 PRKAPSEASAQEQREKQPLEESASRAPSTWEE 89
          P + P EASA+E+R +   EE A+ A +  +E
Sbjct: 18 PEEQPEEASAEEERPEDQQEEEAAAAAAYLDE 49


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,593,081
Number of Sequences: 37866
Number of extensions: 764939
Number of successful extensions: 3070
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2977
Number of HSP's gapped (non-prelim): 113
length of query: 420
length of database: 18,247,518
effective HSP length: 105
effective length of query: 315
effective length of database: 14,271,588
effective search space: 4495550220
effective search space used: 4495550220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.