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Search of human proteins with 8922108
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8922108 cytokine-like 1 [Homo sapiens]
(136 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8922108 cytokine-like 1 [Homo sapiens] 283 3e-77
gi|154091020 leucine-rich repeats and calponin homology (CH) dom... 31 0.27
gi|156627577 transglutaminase 4 (prostate) [Homo sapiens] 30 0.61
gi|145309324 FH2 domain containing 1 [Homo sapiens] 29 1.0
gi|11345450 secretin preproprotein [Homo sapiens] 29 1.4
gi|149773484 leucine rich repeat and fibronectin type III domain... 28 1.8
gi|27363458 leucine rich repeat and fibronectin type III domain ... 28 2.3
gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens] 28 2.3
gi|51093861 caspase recruitment domain protein 10 [Homo sapiens] 28 3.0
gi|229089140 leucine rich repeat containing 24 [Homo sapiens] 27 3.9
gi|13375646 leucine rich repeat and fibronectin type III domain ... 27 3.9
gi|110349792 growth differentiation factor 1 [Homo sapiens] 27 3.9
gi|31083156 interleukin 20 receptor, alpha [Homo sapiens] 27 3.9
gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte chemota... 27 6.7
gi|221625538 MORC family CW-type zinc finger 1 [Homo sapiens] 27 6.7
gi|116174754 phospholipase A2, group IVD [Homo sapiens] 27 6.7
gi|239755296 PREDICTED: similar to hCG1644292 [Homo sapiens] 27 6.7
gi|239749791 PREDICTED: similar to hCG1644292 [Homo sapiens] 27 6.7
gi|83779010 SECIS binding protein 2 [Homo sapiens] 27 6.7
gi|4507493 thrombopoietin precursor [Homo sapiens] 27 6.7
gi|105990532 apolipoprotein B precursor [Homo sapiens] 26 8.8
gi|50845384 ADAM metallopeptidase with thrombospondin type 1 mot... 26 8.8
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens] 26 8.8
>gi|8922108 cytokine-like 1 [Homo sapiens]
Length = 136
Score = 283 bits (724), Expect = 3e-77
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MRTPGPLPVLLLLLAGAPAARPTPPTCYSRMRALSQEITRDFNLLQVSEPSEPCVRYLPR 60
MRTPGPLPVLLLLLAGAPAARPTPPTCYSRMRALSQEITRDFNLLQVSEPSEPCVRYLPR
Sbjct: 1 MRTPGPLPVLLLLLAGAPAARPTPPTCYSRMRALSQEITRDFNLLQVSEPSEPCVRYLPR 60
Query: 61 LYLDIHNYCVLDKLRDFVASPPCWKVAQVDSLKDKARKLYTIMNSFCRRDLVFLLDDCNA 120
LYLDIHNYCVLDKLRDFVASPPCWKVAQVDSLKDKARKLYTIMNSFCRRDLVFLLDDCNA
Sbjct: 61 LYLDIHNYCVLDKLRDFVASPPCWKVAQVDSLKDKARKLYTIMNSFCRRDLVFLLDDCNA 120
Query: 121 LEYPIPVTTVLPDRQR 136
LEYPIPVTTVLPDRQR
Sbjct: 121 LEYPIPVTTVLPDRQR 136
>gi|154091020 leucine-rich repeats and calponin homology (CH) domain
containing 2 [Homo sapiens]
Length = 765
Score = 31.2 bits (69), Expect = 0.27
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 25 PTCYSRMRALSQEITRDFNLLQVSEPSEPCVRYLPRL--YLDIHNYCVLDKLRDFVASPP 82
P CY ++ L Q I D N LQV P++ C++ + YL+I C +DK D + P
Sbjct: 263 PVCYRKLHHL-QVIILDNNPLQVP-PAQICLKGKVHIFKYLNIQACCRMDKKPDSLDLPS 320
Query: 83 CWKVAQVDSLKDKARKLYTIMN 104
K L D Y N
Sbjct: 321 LSKRMPSQPLTDSMEDFYPNKN 342
>gi|156627577 transglutaminase 4 (prostate) [Homo sapiens]
Length = 684
Score = 30.0 bits (66), Expect = 0.61
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 92 LKDKARKLYTIMNSFCRRDLVFLLDDCNALEY 123
LK + LY + N +C+ D+VF+ D+ EY
Sbjct: 127 LKSEENILYLLFNPWCKEDMVFMPDEDERKEY 158
>gi|145309324 FH2 domain containing 1 [Homo sapiens]
Length = 1143
Score = 29.3 bits (64), Expect = 1.0
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 26/91 (28%)
Query: 28 YSRMRALSQEITRDFNLLQVSEPSEPCVRYLPRLYLDIHNYCVLDKLRDFVASPPCWKVA 87
+ R ++L + I RD L Q E D + + +KLR+ CWK
Sbjct: 381 FVRTKSLKENIQRDGELCQQME--------------DFLQFAI-EKLREL----ECWK-- 419
Query: 88 QVDSLKDKARKLYTIMNSFCRRDLVFLLDDC 118
L+D+A YT+++ FC LD+C
Sbjct: 420 --QELQDEA---YTLIDFFCEDKKTMKLDEC 445
>gi|11345450 secretin preproprotein [Homo sapiens]
Length = 121
Score = 28.9 bits (63), Expect = 1.4
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 4 PGPLPVLLLLLAGAPAARPTPP 25
P PL +LLLLL G+ AARP PP
Sbjct: 3 PRPLLLLLLLLGGS-AARPAPP 23
>gi|149773484 leucine rich repeat and fibronectin type III domain
containing 1 [Homo sapiens]
Length = 771
Score = 28.5 bits (62), Expect = 1.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 4 PGPLPVLLLLLAGAPAARPTPPTC 27
P LP LLLL AGA +P P C
Sbjct: 15 PAALPFLLLLWAGASRGQPCPGRC 38
>gi|27363458 leucine rich repeat and fibronectin type III domain
containing 4 [Homo sapiens]
Length = 635
Score = 28.1 bits (61), Expect = 2.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 8 PVLLLLLAGAPAARPTPPTCYSRMRALS 35
P+LLLLLA AA P P C + +LS
Sbjct: 4 PLLLLLLASGAAACPLPCVCQNLSESLS 31
>gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens]
Length = 2390
Score = 28.1 bits (61), Expect = 2.3
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 4 PGPLPVLLLLLAGAPAARPTPPTC---YSRMRALSQEITRD 41
P LP LLA A R YSR+RAL +E+TRD
Sbjct: 1094 PATLPEAEALLAQHAALRGEVERAQSEYSRLRALGEEVTRD 1134
>gi|51093861 caspase recruitment domain protein 10 [Homo sapiens]
Length = 1032
Score = 27.7 bits (60), Expect = 3.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 16 GAPAARPTPPTCYSRMRALSQEITRDFNLLQV 47
GAP A+P P SR+RA+ + + + LL++
Sbjct: 893 GAPKAQPATPGLGSRIRAIQESVGKKHCLLEL 924
>gi|229089140 leucine rich repeat containing 24 [Homo sapiens]
Length = 513
Score = 27.3 bits (59), Expect = 3.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 1 MRTPGPLPVLLLLLAGAPAARPTPPTCYS 29
+R P LP+LLLLL A P CYS
Sbjct: 3 LRAPALLPLLLLLLPLRAAGCPAACRCYS 31
>gi|13375646 leucine rich repeat and fibronectin type III domain
containing 3 [Homo sapiens]
Length = 628
Score = 27.3 bits (59), Expect = 3.9
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 7 LPVLLLLLAGAPAARP----TPPTCYSRMRALSQEI 38
LP+LL LL APA+ P TP C R R +Q +
Sbjct: 4 LPLLLCLLPLAPASSPPQSATPSPCPRRCRCQTQSL 39
>gi|110349792 growth differentiation factor 1 [Homo sapiens]
Length = 372
Score = 27.3 bits (59), Expect = 3.9
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 4 PGPLPVLLLLLA------GAPAARPTPPTCYSRMRALSQEITR 40
PGP LL L GAP RP PP + R + TR
Sbjct: 33 PGPAAALLQALGLRDEPQGAPRLRPVPPVMWRLFRRRDPQETR 75
>gi|31083156 interleukin 20 receptor, alpha [Homo sapiens]
Length = 553
Score = 27.3 bits (59), Expect = 3.9
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 1 MRTPG-------PLPVLLLLLAGAPAARPTP 24
MR PG PLP LLLLL AP R P
Sbjct: 1 MRAPGRPALRPLPLPPLLLLLLAAPWGRAVP 31
>gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte
chemotactic protein 2) [Homo sapiens]
Length = 114
Score = 26.6 bits (57), Expect = 6.7
Identities = 34/118 (28%), Positives = 47/118 (39%), Gaps = 16/118 (13%)
Query: 2 RTPGPLPVLLLLLAGAPAARPTPPTCYSRMRALSQEITRDFNLLQVSEPSEPCVRYLPRL 61
R PGP L LLA TPP + +S +T E C+R R+
Sbjct: 10 RVPGPSGSLCALLALLLLL--TPPGPLASAGPVSAVLT---------ELRCTCLRVTLRV 58
Query: 62 YLDIHNYCVLDKLRDFVASPPCWKVAQVDSLKDKARKLYTIMNSFCRRDLVFLLDDCN 119
N + KL+ F A P C KV V SLK+ + F ++ + +LD N
Sbjct: 59 -----NPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGN 111
>gi|221625538 MORC family CW-type zinc finger 1 [Homo sapiens]
Length = 984
Score = 26.6 bits (57), Expect = 6.7
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 31 MRALSQEITRDFNLLQVSEPSEPCVRYLPRLYLDIHNYCVLDKLRDFVASPPCWKVAQVD 90
+++ S I +DF L E + CV + +C + L + V P W + +
Sbjct: 103 LKSGSMRIGKDFILFTKKEETMTCVFFS-------QTFCEEESLSEVVVPMPSWLIRTRE 155
Query: 91 SLKDKARK 98
S+ D +K
Sbjct: 156 SVTDDPQK 163
>gi|116174754 phospholipase A2, group IVD [Homo sapiens]
Length = 818
Score = 26.6 bits (57), Expect = 6.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 52 EPCVRYLPRLYLDIHNYCVLDKLRDFVASPPCWKVAQVDSLKDKARKL 99
EP + +L ++ +I + +LD D +S WK +KDK R L
Sbjct: 517 EPRICFLEAIWSNIFSLNLLDAWYDLTSSGESWK----QHIKDKTRSL 560
>gi|239755296 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 671
Score = 26.6 bits (57), Expect = 6.7
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 14 LAGAPAARPTPPTCYSRMRALSQEITRDFNLLQVSEPSEPCVRYLPRLYLDIHNYCVLDK 73
L P T P Y +R S+ + ++ L ++ + + YL+ H C D
Sbjct: 208 LPNTPEGNFTSPG-YDGVRNYSRNLNCEWTLSNPNQGNSSIYIHFEDFYLESHQDCQFDV 266
Query: 74 LRDFVASPPCWKV 86
L V + WKV
Sbjct: 267 LEFRVVASEHWKV 279
>gi|239749791 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 671
Score = 26.6 bits (57), Expect = 6.7
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 14 LAGAPAARPTPPTCYSRMRALSQEITRDFNLLQVSEPSEPCVRYLPRLYLDIHNYCVLDK 73
L P T P Y +R S+ + ++ L ++ + + YL+ H C D
Sbjct: 208 LPNTPEGNFTSPG-YDGVRNYSRNLNCEWTLSNPNQGNSSIYIHFEDFYLESHQDCQFDV 266
Query: 74 LRDFVASPPCWKV 86
L V + WKV
Sbjct: 267 LEFRVVASEHWKV 279
>gi|83779010 SECIS binding protein 2 [Homo sapiens]
Length = 854
Score = 26.6 bits (57), Expect = 6.7
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 64 DIHNYCVLDKLRDFVASPPCWKVAQVDSLKDKARKLYTIMNSFCRRDLVFL 114
++ + L KL+ + SP C K+ L D L+TI++ C +++ F+
Sbjct: 679 EVLKHLKLKKLKCVIISPNCEKIQSKGGLDD---TLHTIIDYACEQNIPFV 726
>gi|4507493 thrombopoietin precursor [Homo sapiens]
Length = 353
Score = 26.6 bits (57), Expect = 6.7
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 7 LPVLLLLLAGAPAARPTPPTCYSRMRALSQEITRDFNLLQVSEPSEPCVRYLP 59
L V+LLL A + P PP C +R LS ++ RD ++L P V LP
Sbjct: 8 LVVMLLLTARLTLSSPAPPAC--DLRVLS-KLLRDSHVLHSRLSQCPEVHPLP 57
>gi|105990532 apolipoprotein B precursor [Homo sapiens]
Length = 4563
Score = 26.2 bits (56), Expect = 8.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 77 FVASPPCWKVAQVDSLKDKARKLYTIMNSFCRRDLVFLLDDCNAL 121
F P + SLK+KA + T+++S C + FL + N L
Sbjct: 3887 FEVDSPVYNATWSASLKNKADYVETVLDSTCSSTVQFLEYELNVL 3931
>gi|50845384 ADAM metallopeptidase with thrombospondin type 1 motif,
1 preproprotein [Homo sapiens]
Length = 967
Score = 26.2 bits (56), Expect = 8.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 45 LQVSEPSEPCVRYLPRLYLDI-HNYCVLDKLRDFVASP 81
L S+P PC Y+ +LD H C++DK ++ + P
Sbjct: 437 LDHSQPWSPCSAYMITSFLDNGHGECLMDKPQNPIQLP 474
>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
Length = 981
Score = 26.2 bits (56), Expect = 8.8
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 10 LLLLLAGAPAARPTPPT---CYSRMRALS 35
L L LA AARP PPT C++++ L+
Sbjct: 691 LALALAAVAAARPRPPTEHACWAKLMRLA 719
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.141 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,212,646
Number of Sequences: 37866
Number of extensions: 277100
Number of successful extensions: 1124
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1112
Number of HSP's gapped (non-prelim): 25
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.