Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 89111119
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89111119 metallothionein-like 5, testis-specific isoform b
[Homo sapiens]
(306 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89111119 metallothionein-like 5, testis-specific isoform b [H... 622 e-179
gi|40806200 metallothionein-like 5, testis-specific isoform a [H... 622 e-179
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ... 33 0.24
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens] 33 0.24
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 30 2.0
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 30 2.0
gi|169206224 PREDICTED: hypothetical protein [Homo sapiens] 30 3.5
gi|169206527 PREDICTED: hypothetical protein [Homo sapiens] 30 3.5
gi|113424187 PREDICTED: hypothetical protein [Homo sapiens] 30 3.5
gi|146232000 checkpoint suppressor 1 isoform 1 [Homo sapiens] 29 4.6
gi|44955921 ELK3 protein [Homo sapiens] 29 4.6
gi|31542319 epsilon subunit of coatomer protein complex isoform ... 29 4.6
gi|40805825 epsilon subunit of coatomer protein complex isoform ... 29 4.6
gi|17975763 myelin transcription factor 1 [Homo sapiens] 29 6.0
gi|30410035 late cornified envelope 5A [Homo sapiens] 29 6.0
gi|13899269 SRY-box 7 [Homo sapiens] 28 7.8
gi|239744142 PREDICTED: hypothetical protein isoform 1 [Homo sap... 28 7.8
gi|239744140 PREDICTED: hypothetical protein [Homo sapiens] 28 7.8
gi|24308115 interferon regulatory factor 2 binding protein 1 [Ho... 28 7.8
>gi|89111119 metallothionein-like 5, testis-specific isoform b [Homo
sapiens]
Length = 306
Score = 622 bits (1605), Expect = e-179
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MEEGPLPGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPK 60
MEEGPLPGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPK
Sbjct: 1 MEEGPLPGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPK 60
Query: 61 EPVLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPELSALEDVALLQAPQPPAC 120
EPVLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPELSALEDVALLQAPQPPAC
Sbjct: 61 EPVLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPELSALEDVALLQAPQPPAC 120
Query: 121 NVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEATLQNL 180
NVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEATLQNL
Sbjct: 121 NVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEATLQNL 180
Query: 181 LAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQMLCIDNSRTRELKALHLVPQ 240
LAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQMLCIDNSRTRELKALHLVPQ
Sbjct: 181 LAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQMLCIDNSRTRELKALHLVPQ 240
Query: 241 YQDQNNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPP 300
YQDQNNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPP
Sbjct: 241 YQDQNNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPP 300
Query: 301 KITLAG 306
KITLAG
Sbjct: 301 KITLAG 306
>gi|40806200 metallothionein-like 5, testis-specific isoform a [Homo
sapiens]
Length = 508
Score = 622 bits (1605), Expect = e-179
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MEEGPLPGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPK 60
MEEGPLPGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPK
Sbjct: 1 MEEGPLPGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPK 60
Query: 61 EPVLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPELSALEDVALLQAPQPPAC 120
EPVLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPELSALEDVALLQAPQPPAC
Sbjct: 61 EPVLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIPELSALEDVALLQAPQPPAC 120
Query: 121 NVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEATLQNL 180
NVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEATLQNL
Sbjct: 121 NVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEATLQNL 180
Query: 181 LAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQMLCIDNSRTRELKALHLVPQ 240
LAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQMLCIDNSRTRELKALHLVPQ
Sbjct: 181 LAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGGTQMLCIDNSRTRELKALHLVPQ 240
Query: 241 YQDQNNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPP 300
YQDQNNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPP
Sbjct: 241 YQDQNNYLQSDVPKPMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGPP 300
Query: 301 KITLAG 306
KITLAG
Sbjct: 301 KITLAG 306
>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
sapiens]
Length = 2542
Score = 33.5 bits (75), Expect = 0.24
Identities = 43/196 (21%), Positives = 67/196 (34%), Gaps = 42/196 (21%)
Query: 103 LSALEDVALLQAPQPPACNVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMI------ 156
LS + L P F SL A+ P L A ++ HP + M
Sbjct: 1822 LSTFQPANKLNKNVPTNVRSSFPVSLPLAYPHPHFALLAAQTMQQIRHPRLPMAQFGGTF 1881
Query: 157 --------PVEIKEAGGTTTSNNPEEATLQNLLAQESCCKFPSSQELEDASCCSLKKDSN 208
P ++ T+++P+ L Q S L ASC
Sbjct: 1882 SPSPNTWGPFPVRPVNPGNTNSSPKHNNTSRLPNQNGTVLPSESAGLATASC-------- 1933
Query: 209 PMVICQLKGGTQMLCIDNSRTRELKALHLVPQYQDQNNYLQSDVPKPMTALVGRFLPAST 268
P+ + + +Q LC+ N+RT S V K + A V + P +T
Sbjct: 1934 PITVSSVVAASQQLCVTNTRT-------------------PSSVRKQLFACVPKTSPPAT 1974
Query: 269 KLNLITQQLEGALPSV 284
++ +T +LPSV
Sbjct: 1975 VISSVTSTC-SSLPSV 1989
>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
Length = 2617
Score = 33.5 bits (75), Expect = 0.24
Identities = 43/196 (21%), Positives = 67/196 (34%), Gaps = 42/196 (21%)
Query: 103 LSALEDVALLQAPQPPACNVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMI------ 156
LS + L P F SL A+ P L A ++ HP + M
Sbjct: 1822 LSTFQPANKLNKNVPTNVRSSFPVSLPLAYPHPHFALLAAQTMQQIRHPRLPMAQFGGTF 1881
Query: 157 --------PVEIKEAGGTTTSNNPEEATLQNLLAQESCCKFPSSQELEDASCCSLKKDSN 208
P ++ T+++P+ L Q S L ASC
Sbjct: 1882 SPSPNTWGPFPVRPVNPGNTNSSPKHNNTSRLPNQNGTVLPSESAGLATASC-------- 1933
Query: 209 PMVICQLKGGTQMLCIDNSRTRELKALHLVPQYQDQNNYLQSDVPKPMTALVGRFLPAST 268
P+ + + +Q LC+ N+RT S V K + A V + P +T
Sbjct: 1934 PITVSSVVAASQQLCVTNTRT-------------------PSSVRKQLFACVPKTSPPAT 1974
Query: 269 KLNLITQQLEGALPSV 284
++ +T +LPSV
Sbjct: 1975 VISSVTSTC-SSLPSV 1989
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 30.4 bits (67), Expect = 2.0
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 116 QPPACNVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEA 175
+ P L++L P H SP L A V+ P P+ G TTTS + E
Sbjct: 988 EKPTIPTEKLTALRPPHPSPTATGLAALVMS----PHAPSTPMTSVILGTTTTSRSSTER 1043
Query: 176 TLQNLLAQESCCKFPSSQELEDASCCSLKKD 206
N A+ C P+S + SC L ++
Sbjct: 1044 CPPN--ARYESCACPASCKSPRPSCGPLCRE 1072
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 30.4 bits (67), Expect = 2.0
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 116 QPPACNVHFLSSLLPAHRSPAVLPLGAWVLEGASHPGVRMIPVEIKEAGGTTTSNNPEEA 175
+ P L++L P H SP L A V+ P P+ G TTTS + E
Sbjct: 988 EKPTIPTEKLTALRPPHPSPTATGLAALVMS----PHAPSTPMTSVILGTTTTSRSSTER 1043
Query: 176 TLQNLLAQESCCKFPSSQELEDASCCSLKKD 206
N A+ C P+S + SC L ++
Sbjct: 1044 CPPN--ARYESCACPASCKSPRPSCGPLCRE 1072
>gi|169206224 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 29.6 bits (65), Expect = 3.5
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 255 PMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGP 299
P + L+ LPA N ++ LEG V GS FPS TLP P
Sbjct: 279 PDSRLLQNPLPAHLTANFASEGLEG-----VPGSCFPSCGTLPFP 318
>gi|169206527 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 29.6 bits (65), Expect = 3.5
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 255 PMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGP 299
P + L+ LPA N ++ LEG V GS FPS TLP P
Sbjct: 279 PDSRLLQNPLPAHLTANFASEGLEG-----VPGSCFPSCGTLPFP 318
>gi|113424187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 29.6 bits (65), Expect = 3.5
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 255 PMTALVGRFLPASTKLNLITQQLEGALPSVVNGSAFPSGSTLPGP 299
P + L+ LPA N ++ LEG V GS FPS TLP P
Sbjct: 229 PDSRLLQNPLPAHLTANFASEGLEG-----VPGSCFPSCGTLPFP 268
>gi|146232000 checkpoint suppressor 1 isoform 1 [Homo sapiens]
Length = 490
Score = 29.3 bits (64), Expect = 4.6
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 110 ALLQAPQPPACNVHFLSSLLPAHRS---PAVLPLGAWVLEGASHPGVRMIPVEIKEAGGT 166
ALLQ P A + L + P ++ P V+ GA VL PGVR P+ I G T
Sbjct: 245 ALLQDPDIDAASAMMLLNTPPEIQAGFPPGVIQNGARVLSRGLFPGVR--PLPITPIGVT 302
Query: 167 TTSNNPEEATLQNLLAQESCCKFPSSQELEDASCCSLKKDSN 208
N + ++ SC S + ++ S K SN
Sbjct: 303 AAMRNGITSCRMRTESEPSCGSPVVSGDPKEDHNYSSAKSSN 344
>gi|44955921 ELK3 protein [Homo sapiens]
Length = 407
Score = 29.3 bits (64), Expect = 4.6
Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 31/149 (20%)
Query: 22 LSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPKEPVLHAFNPALGADCKGQV-- 79
+S PF+S + L + +F EA +D EP+ N + G+ K
Sbjct: 233 ISSASPFSSRSPSLSPNSPLPSEHRSLFLEAACHDSDSLEPL----NLSSGSKTKSPSLP 288
Query: 80 -KAKLAGG-----------DSDGGELLGEYPGIPE-------LSALEDVALLQAPQPPAC 120
KAK G +D G + P +P +A LL P P
Sbjct: 289 PKAKKPKGLEISAPPLVLSGTDIGSIALNSPALPSGSLTPAFFTAQTPNGLLLTPSPLLS 348
Query: 121 NVHFLSSLLPAHRSPAVLPLGAWVLEGAS 149
++HF SSL P V PL L+G S
Sbjct: 349 SIHFWSSLSP------VAPLSPARLQGPS 371
>gi|31542319 epsilon subunit of coatomer protein complex isoform a
[Homo sapiens]
Length = 308
Score = 29.3 bits (64), Expect = 4.6
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 24/126 (19%)
Query: 14 EDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPKEPVLHAFNPALGA 73
EDA +T+L A+ + L + +D +++F+E AD P L N
Sbjct: 177 EDATLTQL-------ATAWVSLATGGEKLQDAYYIFQEM----ADKCSPTLLLLN----- 220
Query: 74 DCKGQVKAKLAGGDSDGGE-----LLGEYPGIPELSALEDVALLQAPQPPACNVHFLSSL 128
GQ +A G + E L + G PE V +PP +LS L
Sbjct: 221 ---GQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQL 277
Query: 129 LPAHRS 134
AHRS
Sbjct: 278 KDAHRS 283
>gi|40805825 epsilon subunit of coatomer protein complex isoform b
[Homo sapiens]
Length = 257
Score = 29.3 bits (64), Expect = 4.6
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 24/126 (19%)
Query: 14 EDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPKEPVLHAFNPALGA 73
EDA +T+L A+ + L + +D +++F+E AD P L N
Sbjct: 126 EDATLTQL-------ATAWVSLATGGEKLQDAYYIFQEM----ADKCSPTLLLLN----- 169
Query: 74 DCKGQVKAKLAGGDSDGGE-----LLGEYPGIPELSALEDVALLQAPQPPACNVHFLSSL 128
GQ +A G + E L + G PE V +PP +LS L
Sbjct: 170 ---GQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQL 226
Query: 129 LPAHRS 134
AHRS
Sbjct: 227 KDAHRS 232
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 28.9 bits (63), Expect = 6.0
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 69 PALGADCKGQVKAKLAGGDSDGGELLGEYPGI---PELSALEDVALLQAPQPPACNVHFL 125
P G D G + A S G + G+ P ED L++ P P + +
Sbjct: 845 PTPGCDGSGHITGNYASHRSLSGCPRAKKSGVKVAPTKDDKEDPELMKCPVPGCVGLGHI 904
Query: 126 SSLLPAHRSPAVLPLGA 142
S +HRS + PL A
Sbjct: 905 SGKYASHRSASGCPLAA 921
>gi|30410035 late cornified envelope 5A [Homo sapiens]
Length = 118
Score = 28.9 bits (63), Expect = 6.0
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 162 EAGGTTTSNNPEEATLQNLLAQESCCKFPSSQELEDASCCSLKKDSNPMVICQLKGG 218
E GG S++ +L+ SCC S Q+ +SCC S C GG
Sbjct: 63 EGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSG---CCHSSGG 116
>gi|13899269 SRY-box 7 [Homo sapiens]
Length = 388
Score = 28.5 bits (62), Expect = 7.8
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 24/100 (24%)
Query: 7 PGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPKEP---- 62
P GLP+P + ++L PE F S +E+ H + +L P P P
Sbjct: 198 PYGLPTPPEMSPLDVLEPEQTFFSS--------PCQEEHGHPRRIPHL-PGHPYSPEYAP 248
Query: 63 -VLHAFNPALGADCKGQVKAKLAGGDSDGGELLGEYPGIP 101
LH +P LG+ LA G S G ++ PG P
Sbjct: 249 SPLHCSHP-LGS---------LALGQSPGVSMMSPVPGCP 278
>gi|239744142 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 629
Score = 28.5 bits (62), Expect = 7.8
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 7 PGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPKEPVLHA 66
P LP P T L P GP A E + K PV + A L P P+ PV A
Sbjct: 425 PQCLPPP----ATPRLEPRGPPAPEVV--KQPVYLPSKAGPKAQTACLPPPRPQRPVTKA 478
Query: 67 FNPALGADCKGQVKAKL 83
P + + KA+L
Sbjct: 479 RRPPPQPHRRAETKARL 495
>gi|239744140 PREDICTED: hypothetical protein [Homo sapiens]
Length = 878
Score = 28.5 bits (62), Expect = 7.8
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 7 PGGLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPKEPVLHA 66
P LP P T L P GP A E + K PV + A L P P+ PV A
Sbjct: 425 PQCLPPP----ATPRLEPRGPPAPEVV--KQPVYLPSKAGPKAQTACLPPPRPQRPVTKA 478
Query: 67 FNPALGADCKGQVKAKL 83
P + + KA+L
Sbjct: 479 RRPPPQPHRRAETKARL 495
>gi|24308115 interferon regulatory factor 2 binding protein 1 [Homo
sapiens]
Length = 584
Score = 28.5 bits (62), Expect = 7.8
Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 26/149 (17%)
Query: 9 GLPSPEDAMVTELLSPEGPFASENIGLKAPVKYEEDEFHVFKEAYLGPADPKEPV-LHAF 67
G + E+ ++P GP+++E G+ +P+ ++ + P PV
Sbjct: 393 GKMTTEEQQQRHWVAPGGPYSAETPGVPSPIAALKNVAEALGHSPKDPGGGGGPVRAGGA 452
Query: 68 NPALGADCKGQVKAKL------------AGGD--SDGGELLGEYPGIPEL-----SALED 108
+PA + + + +L AG + S GG G PG P LED
Sbjct: 453 SPAASSTAQPPTQHRLVARNGEAEVSPTAGAEAVSGGGSGTGATPGAPLCCTLCRERLED 512
Query: 109 VALLQAPQPPA------CNVHFLSSLLPA 131
+Q P P C+ F+ + PA
Sbjct: 513 THFVQCPSVPGHKFCFPCSREFIKAQGPA 541
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,663,673
Number of Sequences: 37866
Number of extensions: 770323
Number of successful extensions: 1641
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1638
Number of HSP's gapped (non-prelim): 20
length of query: 306
length of database: 18,247,518
effective HSP length: 102
effective length of query: 204
effective length of database: 14,385,186
effective search space: 2934577944
effective search space used: 2934577944
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.