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Search of human proteins with 87299626
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|87299626 hypothetical protein LOC283461 [Homo sapiens]
(652 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|87299626 hypothetical protein LOC283461 [Homo sapiens] 1321 0.0
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 45 3e-04
gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 37 0.075
gi|122937223 NOBOX oogenesis homeobox [Homo sapiens] 37 0.075
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 36 0.097
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 36 0.097
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 36 0.13
gi|68160947 secretogranin II precursor [Homo sapiens] 36 0.13
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 35 0.22
gi|229577238 tetratricopeptide repeat domain 18 [Homo sapiens] 34 0.37
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 34 0.37
gi|4759264 COP9 constitutive photomorphogenic homolog subunit 2 ... 34 0.48
gi|110349786 Alstrom syndrome 1 [Homo sapiens] 33 0.83
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 33 0.83
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 33 0.83
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 33 0.83
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap... 33 0.83
gi|54124343 hypothetical protein LOC387680 [Homo sapiens] 33 0.83
gi|154090959 hypothetical protein LOC55747 [Homo sapiens] 33 0.83
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 33 1.1
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 33 1.1
gi|59814411 hypothetical protein LOC253725 [Homo sapiens] 33 1.1
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 32 1.4
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 32 1.4
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 32 1.4
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 32 1.4
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 32 1.4
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 32 1.8
gi|212549782 caspase 8 associated protein 2 [Homo sapiens] 32 1.8
gi|6912288 caspase 8 associated protein 2 [Homo sapiens] 32 1.8
>gi|87299626 hypothetical protein LOC283461 [Homo sapiens]
Length = 652
Score = 1321 bits (3420), Expect = 0.0
Identities = 652/652 (100%), Positives = 652/652 (100%)
Query: 1 MNWVGGSRSRVLIKQERRKQKEYFEKHRLKSKMKSLGVLSPVKNSAVSLDILNLYMVNQI 60
MNWVGGSRSRVLIKQERRKQKEYFEKHRLKSKMKSLGVLSPVKNSAVSLDILNLYMVNQI
Sbjct: 1 MNWVGGSRSRVLIKQERRKQKEYFEKHRLKSKMKSLGVLSPVKNSAVSLDILNLYMVNQI 60
Query: 61 SCKKKIPETVRKPTHVNMNRDIKMPLRKHNLELTMSPHCVPSKLCLDDTETNVNCQRLSS 120
SCKKKIPETVRKPTHVNMNRDIKMPLRKHNLELTMSPHCVPSKLCLDDTETNVNCQRLSS
Sbjct: 61 SCKKKIPETVRKPTHVNMNRDIKMPLRKHNLELTMSPHCVPSKLCLDDTETNVNCQRLSS 120
Query: 121 KEDLGPVQSQGMDSYSMLHPQFSKIENCSFTPSSFSVELPSNRHISKLNFTSGIAPTPQK 180
KEDLGPVQSQGMDSYSMLHPQFSKIENCSFTPSSFSVELPSNRHISKLNFTSGIAPTPQK
Sbjct: 121 KEDLGPVQSQGMDSYSMLHPQFSKIENCSFTPSSFSVELPSNRHISKLNFTSGIAPTPQK 180
Query: 181 LAYEKKQNDQRSTVNCSDSLLSKLNKSQDVFSPSHKTTRFGTLFERLNSLGNRNLLTKSP 240
LAYEKKQNDQRSTVNCSDSLLSKLNKSQDVFSPSHKTTRFGTLFERLNSLGNRNLLTKSP
Sbjct: 181 LAYEKKQNDQRSTVNCSDSLLSKLNKSQDVFSPSHKTTRFGTLFERLNSLGNRNLLTKSP 240
Query: 241 AVIMDEDCRSTDEIRQSDYITEKHSIQHIWGKNGKEVSNFLEDVNQSTPNLLSENCDSFV 300
AVIMDEDCRSTDEIRQSDYITEKHSIQHIWGKNGKEVSNFLEDVNQSTPNLLSENCDSFV
Sbjct: 241 AVIMDEDCRSTDEIRQSDYITEKHSIQHIWGKNGKEVSNFLEDVNQSTPNLLSENCDSFV 300
Query: 301 SQNMINVLNIDEQRIKKTFNKCDYDSMGDTCVVTSSDKNHVTDRCIRNIFTVPELTFSNS 360
SQNMINVLNIDEQRIKKTFNKCDYDSMGDTCVVTSSDKNHVTDRCIRNIFTVPELTFSNS
Sbjct: 301 SQNMINVLNIDEQRIKKTFNKCDYDSMGDTCVVTSSDKNHVTDRCIRNIFTVPELTFSNS 360
Query: 361 TLNKTSYPEKCQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKS 420
TLNKTSYPEKCQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKS
Sbjct: 361 TLNKTSYPEKCQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKS 420
Query: 421 IQKYPANSMGNIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRS 480
IQKYPANSMGNIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRS
Sbjct: 421 IQKYPANSMGNIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRS 480
Query: 481 TSYSPRPTDSCFSSSSDLPSEDEDQISQQIEDSNRMTIKTKEKMNNFYVERMAKLSGDRI 540
TSYSPRPTDSCFSSSSDLPSEDEDQISQQIEDSNRMTIKTKEKMNNFYVERMAKLSGDRI
Sbjct: 481 TSYSPRPTDSCFSSSSDLPSEDEDQISQQIEDSNRMTIKTKEKMNNFYVERMAKLSGDRI 540
Query: 541 VKNDDKIHKQNENFYQFSVKNNTDQFPQLQCNSAHILQNKTNDNCVLQAARCDAGIQTES 600
VKNDDKIHKQNENFYQFSVKNNTDQFPQLQCNSAHILQNKTNDNCVLQAARCDAGIQTES
Sbjct: 541 VKNDDKIHKQNENFYQFSVKNNTDQFPQLQCNSAHILQNKTNDNCVLQAARCDAGIQTES 600
Query: 601 ESVMEEKLDVAIQCDLISKCTCRSDVSLCNLERCSGNIKADTTGGQEIHKNN 652
ESVMEEKLDVAIQCDLISKCTCRSDVSLCNLERCSGNIKADTTGGQEIHKNN
Sbjct: 601 ESVMEEKLDVAIQCDLISKCTCRSDVSLCNLERCSGNIKADTTGGQEIHKNN 652
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 44.7 bits (104), Expect = 3e-04
Identities = 79/408 (19%), Positives = 138/408 (33%), Gaps = 44/408 (10%)
Query: 107 DDTETNVNCQRLSSKEDLGPVQSQGMDSYSMLHPQFSKIENCSFTPSSFSVELPSNRHIS 166
D ++++ + SK D +S DS S S + S S SN S
Sbjct: 609 DSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDS 668
Query: 167 KLNFTSGIAPTPQKLAYEKKQNDQRSTVNCSDSLLSKLNKSQDVFSPSHKTTRFGTLFER 226
+ S + + + +D + N S+S S + D S + + +
Sbjct: 669 SDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDS 728
Query: 227 LNSLGNRNLLTKSPAVIMDEDCRSTDEIRQSDYITEKHSIQHIWGKNGKEVSNFLEDVNQ 286
NS + + S + + S+D SD S + + S+ + N
Sbjct: 729 SNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDS------SDSSDSSDSSDSSNS 782
Query: 287 STPNLLSENCDSFVSQNMINVLNIDEQRIKKTFNKCDYDSMGDTCVVTSSDKNHVTDRCI 346
S N S + DS S N + N + D D+ SSD ++ +D
Sbjct: 783 SDSNDSSNSSDSSDSSNSSDSSNSSDSS--------DSSDSSDSDSSNSSDSSNSSD--- 831
Query: 347 RNIFTVPELTFSNSTLNKTSYPEKCQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKE 406
S+ + S + + + + R+D S S ++ SS +
Sbjct: 832 -------------SSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSD 878
Query: 407 KFENDYQEKTPQKSIQKYPANSMGNIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRIS 466
++ ++ S +NS + S+ +S S D S S S
Sbjct: 879 SSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSD--------------SSNSSDSS 924
Query: 467 TKKISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSEDEDQISQQIEDSN 514
S D++ SS S++ S S S+SSD + + S DSN
Sbjct: 925 ESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSN 972
Score = 35.0 bits (79), Expect = 0.22
Identities = 75/408 (18%), Positives = 146/408 (35%), Gaps = 11/408 (2%)
Query: 107 DDTETNVNCQRLSSKEDLGPVQSQGMDSYSMLHPQFSKIENCSFTPSSFSVELPSNRHIS 166
D +++N + S + S DS + ++ + + SS S N + S
Sbjct: 881 DSSDSNESSNSSDSSDSSNSSDSDSSDSSN----SSDSSDSSNSSDSSESSNSSDNSNSS 936
Query: 167 KLNFTSGIAPTPQKLAYEKKQNDQRSTVNCSDSLLSKLNKSQDVFSPSHKTTRFGTLFER 226
+ +S + + N S+ N SDS S + S D S S ++ +
Sbjct: 937 DSSNSSDSSDSSDSSNSSDSSNSSDSS-NSSDSSDSNSSDSSDS-SNSSDSSDSSDSSDS 994
Query: 227 LNSLGNRNLLTKSPAVIMDEDCRSTDEIRQSDYITEKHSIQHIWGKNGKEVSNFLEDVNQ 286
+S + N S + + S+D SD S + + S+ + +
Sbjct: 995 SDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDS 1054
Query: 287 STPNLLSENCDSFVSQNMINVLNIDEQRIKKTFNKCDYDSMGDTCVVTSSDKNHVTDRCI 346
S + S++ DS S + + + D ++ + D + D+ SSD + +D
Sbjct: 1055 SNSSDSSDSSDSSDSSDSSD--SSDSSDSSESSDSSDSSNSSDSS--DSSDSSDSSDSSD 1110
Query: 347 RNIFTVPELTFSNSTLNKTSYPEKCQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKE 406
+ + + ++S + +S + + +E +D S S ++ SS+ +
Sbjct: 1111 SSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSSD 1170
Query: 407 KFENDYQEKTPQKSIQKYPANSMGNIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRIS 466
++ + S ++S + S + D + S S S
Sbjct: 1171 SSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSS-DSSDSS 1229
Query: 467 TKKISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSEDEDQISQQIEDSN 514
S DS+ SS S+ S S S SSD S+ D+ Q + N
Sbjct: 1230 DSNESSDSSDSSDSSDSSNSSDSSDSSDSSDSTSDSNDESDSQSKSGN 1277
Score = 32.3 bits (72), Expect = 1.4
Identities = 63/330 (19%), Positives = 112/330 (33%), Gaps = 26/330 (7%)
Query: 188 NDQRSTVNCSDSLLSKLNKSQDVFSPSHKTTRFGTLFERLNSLGNRNLLTKSPAVIMDED 247
+D + N SDS S + S S ++ + +S + + S + +
Sbjct: 995 SDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDS 1054
Query: 248 CRSTDEIRQSDYITEKHSIQHIWGKNGKEVSNFLEDVNQSTPNLLSENCDSFVSQNMINV 307
S+D SD S + E S+ + N S + S++ DS S +
Sbjct: 1055 SNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSD---- 1110
Query: 308 LNIDEQRIKKTFNKCDYDSMGDTCVVTSSDKNHVTDRCIRNIFTVPELTFSNSTLNKTSY 367
+ D + N D D+ SSD ++ +D + E + S+ + + +
Sbjct: 1111 -SSDSSDSSDSSNSSDSSDSSDSS--DSSDSSNSSDSSDSS-----ESSDSSDSSDSSDS 1162
Query: 368 PEKCQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKSIQKYPAN 427
+ + + N + +S +D SS +D + + +
Sbjct: 1163 SDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDS 1222
Query: 428 SMGNIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRSTSYSPRP 487
S + S+ S S D S S S S DS+ SS STS S
Sbjct: 1223 SDSSDSSDSNESSDSSD--------------SSDSSDSSNSSDSSDSSDSSDSTSDSNDE 1268
Query: 488 TDSCFSSSSDLPSEDEDQISQQIEDSNRMT 517
+DS S + + + + DSN T
Sbjct: 1269 SDSQSKSGNGNNNGSDSDSDSEGSDSNHST 1298
Score = 31.6 bits (70), Expect = 2.4
Identities = 49/228 (21%), Positives = 83/228 (36%), Gaps = 17/228 (7%)
Query: 293 SENCDSFVSQNMINVLNIDEQRIKKTFNKCDYDSMGDTCVVTSSDKNHVTDRCIRNIFTV 352
S++ DS S + + + K + D DS D+ SSD + +D +
Sbjct: 605 SDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSS---- 660
Query: 353 PELTFSNSTLNKTSYPEKCQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDY 412
++S + +S + N ++ +D S S + SS+ + +D
Sbjct: 661 -----NSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDS 715
Query: 413 QEKTPQKSIQKYPANSMGNIPSEELHSKQSWDFGLDEILMEEGGIY-SLKSKRISTKKIS 471
+ + S +NS + S+ +S S D + S S S S
Sbjct: 716 SDSSNSNSSDSDSSNSSDS--SDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDS 773
Query: 472 LDSAQSSRS-----TSYSPRPTDSCFSSSSDLPSEDEDQISQQIEDSN 514
DS+ SS S +S S +DS SS S S+ D DS+
Sbjct: 774 SDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSS 821
Score = 31.2 bits (69), Expect = 3.1
Identities = 58/259 (22%), Positives = 91/259 (35%), Gaps = 35/259 (13%)
Query: 273 NGKEVSNFLEDVNQSTPNLLSENCDSFVSQNMINVLNIDEQRIKKTFNKCDYDSMGDTCV 332
NG + +D + ST + + N DS + N N N K + D DS +
Sbjct: 503 NGSDSKGAEDDDSDSTSD--TNNSDSNGNGNNGNDDNDKSDSGKGKSDSSDSDSSDSS-- 558
Query: 333 VTSSDKNHVTDRCIRNIFTVPELTFSNSTLNKTSYPEKCQPNKKYQREYNKNERNDLSTS 392
SSD + +D + + SNS+ + S + + N + +S
Sbjct: 559 -NSSDSSDSSDS---------DSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSS 608
Query: 393 FENDYYPSSSERKEKFENDYQEKTPQKSIQKYPANSMGNIPSEELHSKQSWDFGLDEILM 452
+D SS K ++ E S K ++S + S+ + S D
Sbjct: 609 DSSDSSDSSDSSDSKSDSSKSESDSSDSDSK--SDSSDSNSSDSSDNSDSSD-------- 658
Query: 453 EEGGIYSLKSKRISTKKISLDSAQSSRST-----SYSPRPTDSCFSSSSDLPSEDEDQIS 507
S S S S DS+ SS S+ S S +DS SS S S+ D S
Sbjct: 659 ------SSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDS 712
Query: 508 QQIEDSNRMTIKTKEKMNN 526
DS+ + N+
Sbjct: 713 SDSSDSSNSNSSDSDSSNS 731
Score = 29.6 bits (65), Expect = 9.1
Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 2/176 (1%)
Query: 378 QREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKSIQKYPANSMGNIPSEEL 437
+ + N + R D S + + + + E+D + T + +N GN +++
Sbjct: 480 ESDNNSSSRGDASYNSDESKDNGNGSDSKGAEDDDSDSTSDTN--NSDSNGNGNNGNDDN 537
Query: 438 HSKQSWDFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRSTSYSPRPTDSCFSSSSD 497
S D + + S+ S DS SS S S +DS S SSD
Sbjct: 538 DKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSD 597
Query: 498 LPSEDEDQISQQIEDSNRMTIKTKEKMNNFYVERMAKLSGDRIVKNDDKIHKQNEN 553
+ + S DS+ + + K ++ E + S + +D ++N
Sbjct: 598 SSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDN 653
>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
Length = 1441
Score = 36.6 bits (83), Expect = 0.075
Identities = 65/321 (20%), Positives = 130/321 (40%), Gaps = 39/321 (12%)
Query: 252 DEIRQSDY--ITEKHSIQHIWGKNGKEVSNFLEDVNQSTPNLLSENCDSFVSQNMINVL- 308
D+I+++D + I I G GK++S L++ + + +N L
Sbjct: 1036 DDIKEADGGGVGRGKDISTITGHRGKDISTILDEERKENKRPQRAAAARRKKRRRLNDLD 1095
Query: 309 ---NIDEQRIKKTFNKCDYDSMGDTCVVTS-----------SDKNHVTDRCIRNIFTVPE 354
N+DE+ + F D D VV+ S+ + TD C R + P
Sbjct: 1096 SDSNLDEEESEDEFKISDGSQ--DEFVVSDENPDESEEDPPSNDDSDTDFCSRRLRRHP- 1152
Query: 355 LTFSNSTLNKTSYPEKCQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQE 414
+ + ++ + P KKY + + E + S E+D+ + F +D+ E
Sbjct: 1153 ----SRPMRQSRRLRRKTPKKKYSDDDEEEESEENSRDSESDF-------SDDFSDDFVE 1201
Query: 415 KTPQKSIQKYPANSMGNIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKKISLD- 473
++S + SE S++S G + + + + S +S+ K S D
Sbjct: 1202 TRRRRSRRNQKRQINYKEDSESDGSQKSLRRGKEIRRVHKRRLSSSESEESYLSKNSEDD 1261
Query: 474 --SAQSSRSTSYSPRPTDSCFSSSSDLPSEDEDQISQQIEDSNRMTIKTKEKMNNFY--V 529
+ +S RS R TD +S + + E+E + S+ + +R+ +E +N +
Sbjct: 1262 ELAKESKRSVRKRGRSTDE-YSEADEEEEEEEGKPSR--KRLHRIETDEEESCDNAHGDA 1318
Query: 530 ERMAKLSGDRIVKNDDKIHKQ 550
+ A+ S R++ ++ + K+
Sbjct: 1319 NQPARDSQPRVLPSEQESTKK 1339
>gi|122937223 NOBOX oogenesis homeobox [Homo sapiens]
Length = 490
Score = 36.6 bits (83), Expect = 0.075
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 363 NKTSYPE-KCQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKSI 421
+K PE CQ KK + Y ++ +L F+ D+YP S +R+E + TPQ+ +
Sbjct: 260 HKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQT--VGVTPQRIM 317
Query: 422 QK----YPANSMGNIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKKISLDSAQS 477
K A G P+ E QS + + + ++R +K+ + +
Sbjct: 318 VKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQ--------NRRAKWRKMEKLNGKE 369
Query: 478 SRSTSYSPRPTDS-CFSSSSDLPS 500
S+ +P P S C S++ LP+
Sbjct: 370 SKDNPAAPGPASSQCSSAAEILPA 393
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 36.2 bits (82), Expect = 0.097
Identities = 76/401 (18%), Positives = 140/401 (34%), Gaps = 45/401 (11%)
Query: 191 RSTVNCSDSLLSKLNKSQDVFSPSHKTTRFGTLFERLNSLGNRNLL-TKSPAVIMDEDCR 249
R +CS S K + +D + S K + L ER N RN +S + D +
Sbjct: 1064 RKRQDCSSSDTEKYSMKEDGCNSSDKRLKRIELRERRNLSSKRNTKEIQSGSSSSDAEES 1123
Query: 250 STDEIRQSDYITEKHSIQHIWGKNGKEVSNFLE----DVNQSTPNLLSENCDSFVSQNMI 305
S D ++ + K + K + + D+ S+ + + ++ QN I
Sbjct: 1124 SEDNKKKKQRTSSKKKAVIVKEKKRNSLRTSTKRKQADITSSSSSDIEDD-----DQNSI 1178
Query: 306 NVLNIDEQRIKKTFNKCDYDSMGDTC--------------VVTSSDKNHVTDRCIRNIFT 351
+ DEQ+IK S C V D ++ + I
Sbjct: 1179 GEGSSDEQKIKPVTENLVLSSHTGFCQSSGDEALSKSVPVTVDDDDDDNDPENRIAKKML 1238
Query: 352 VPELTFSNSTLNKTSYPEKCQPNKKYQREYNKNERNDLSTSFE-NDYYPSSSERKEK--- 407
+ E+ + S+ S ++ + KK + N+ D + N S SE +K
Sbjct: 1239 LEEIKANLSSDEDGSSDDEPEEGKKRTGKQNEENPGDEEAKNQVNSESDSDSEESKKPRY 1298
Query: 408 -------------FENDYQEKTPQKSIQKYPANSMGNIPSEELHSKQSWDFGLDEILMEE 454
E+ ++KT K ++ + + SE+ + G+ E + E
Sbjct: 1299 RHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSSEDSEDSDFQESGVSEEVSES 1358
Query: 455 GGIYSLKSKRISTKKISLDSAQSSRSTSYSPR--PTDSCFSSSSDLPSEDEDQISQQIED 512
+ + S KK L+ Q S R SS + SE+E++ ++ E+
Sbjct: 1359 ED--EQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEE 1416
Query: 513 SNRMTIKTKEKMNNFYVERMAKLSGDRIVKNDDKIHKQNEN 553
+ +E N+ R + DDK+ + +N
Sbjct: 1417 EEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQN 1457
Score = 31.6 bits (70), Expect = 2.4
Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 6/154 (3%)
Query: 366 SYPEKCQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKSIQKYP 425
S +K N Y RE + + S+ D S +E+ E+ K +++
Sbjct: 1038 SSEDKKSKNGAYGREKKRCKLLGKSSRKRQDCSSSDTEKYSMKEDGCNSS--DKRLKRIE 1095
Query: 426 ANSMGNIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKK---ISLDSAQSSRSTS 482
N+ S+ ++K+ E K +R S+KK I + ++S TS
Sbjct: 1096 LRERRNLSSKR-NTKEIQSGSSSSDAEESSEDNKKKKQRTSSKKKAVIVKEKKRNSLRTS 1154
Query: 483 YSPRPTDSCFSSSSDLPSEDEDQISQQIEDSNRM 516
+ D SSSSD+ +D++ I + D ++
Sbjct: 1155 TKRKQADITSSSSSDIEDDDQNSIGEGSSDEQKI 1188
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 36.2 bits (82), Expect = 0.097
Identities = 76/401 (18%), Positives = 140/401 (34%), Gaps = 45/401 (11%)
Query: 191 RSTVNCSDSLLSKLNKSQDVFSPSHKTTRFGTLFERLNSLGNRNLL-TKSPAVIMDEDCR 249
R +CS S K + +D + S K + L ER N RN +S + D +
Sbjct: 1102 RKRQDCSSSDTEKYSMKEDGCNSSDKRLKRIELRERRNLSSKRNTKEIQSGSSSSDAEES 1161
Query: 250 STDEIRQSDYITEKHSIQHIWGKNGKEVSNFLE----DVNQSTPNLLSENCDSFVSQNMI 305
S D ++ + K + K + + D+ S+ + + ++ QN I
Sbjct: 1162 SEDNKKKKQRTSSKKKAVIVKEKKRNSLRTSTKRKQADITSSSSSDIEDD-----DQNSI 1216
Query: 306 NVLNIDEQRIKKTFNKCDYDSMGDTC--------------VVTSSDKNHVTDRCIRNIFT 351
+ DEQ+IK S C V D ++ + I
Sbjct: 1217 GEGSSDEQKIKPVTENLVLSSHTGFCQSSGDEALSKSVPVTVDDDDDDNDPENRIAKKML 1276
Query: 352 VPELTFSNSTLNKTSYPEKCQPNKKYQREYNKNERNDLSTSFE-NDYYPSSSERKEK--- 407
+ E+ + S+ S ++ + KK + N+ D + N S SE +K
Sbjct: 1277 LEEIKANLSSDEDGSSDDEPEEGKKRTGKQNEENPGDEEAKNQVNSESDSDSEESKKPRY 1336
Query: 408 -------------FENDYQEKTPQKSIQKYPANSMGNIPSEELHSKQSWDFGLDEILMEE 454
E+ ++KT K ++ + + SE+ + G+ E + E
Sbjct: 1337 RHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSSEDSEDSDFQESGVSEEVSES 1396
Query: 455 GGIYSLKSKRISTKKISLDSAQSSRSTSYSPR--PTDSCFSSSSDLPSEDEDQISQQIED 512
+ + S KK L+ Q S R SS + SE+E++ ++ E+
Sbjct: 1397 ED--EQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEE 1454
Query: 513 SNRMTIKTKEKMNNFYVERMAKLSGDRIVKNDDKIHKQNEN 553
+ +E N+ R + DDK+ + +N
Sbjct: 1455 EEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQN 1495
Score = 31.6 bits (70), Expect = 2.4
Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 6/154 (3%)
Query: 366 SYPEKCQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKSIQKYP 425
S +K N Y RE + + S+ D S +E+ E+ K +++
Sbjct: 1076 SSEDKKSKNGAYGREKKRCKLLGKSSRKRQDCSSSDTEKYSMKEDGCNSS--DKRLKRIE 1133
Query: 426 ANSMGNIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKK---ISLDSAQSSRSTS 482
N+ S+ ++K+ E K +R S+KK I + ++S TS
Sbjct: 1134 LRERRNLSSKR-NTKEIQSGSSSSDAEESSEDNKKKKQRTSSKKKAVIVKEKKRNSLRTS 1192
Query: 483 YSPRPTDSCFSSSSDLPSEDEDQISQQIEDSNRM 516
+ D SSSSD+ +D++ I + D ++
Sbjct: 1193 TKRKQADITSSSSSDIEDDDQNSIGEGSSDEQKI 1226
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 35.8 bits (81), Expect = 0.13
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 13/135 (9%)
Query: 369 EKCQPNKKYQREYNKNERNDLSTSFENDYYPSSS-----ERKEKFENDYQEKTPQKSIQK 423
+K + KK+Q+ +K++++ S+S + SSS E N+ ++K +K +K
Sbjct: 237 KKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESESNNKEKKIQRKKRKK 296
Query: 424 YPANSMGNIPSEE--------LHSKQSWDFGLDEILMEEGGIYSLKSKRISTKKISLDSA 475
+ N SEE LH + S E E+ +S R +K DS
Sbjct: 297 NKCSGHNNSDSEEKDKSKKRKLHEELSSSHHNREKAKEKPRFLKHESSREDSKWSHSDSD 356
Query: 476 QSSRSTSYSPRPTDS 490
+ SR+ +SP S
Sbjct: 357 KKSRTHKHSPEKRGS 371
>gi|68160947 secretogranin II precursor [Homo sapiens]
Length = 617
Score = 35.8 bits (81), Expect = 0.13
Identities = 58/285 (20%), Positives = 112/285 (39%), Gaps = 25/285 (8%)
Query: 273 NGKEVSNFLED-VNQSTPNLLSENCDSFVSQNMINVLNIDE---QRIKKTFNKCDYDSMG 328
+G E ++F + + Q P+L EN F S MI L E Q+ K + DY+
Sbjct: 23 SGAEAASFQRNQLLQKEPDLRLENVQKFPSPEMIRALEYIENLRQQAHKEESSPDYNPYQ 82
Query: 329 DTCVVT----SSDKNHVTDRCIRNIFTVPELTFSNSTLNKTSYPEKCQP--NKKYQREYN 382
V + D++H+ +R ++ + L + + P NK Y
Sbjct: 83 GVSVPLQQKENGDESHLPER--DSLSEEDWMRIILEALRQAENEPQSAPKENKPYALNSE 140
Query: 383 KNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKSIQKYPANSMGNIPSEELHSKQS 442
KN D+S +E +P + +F Y+E + ++ N EE ++ QS
Sbjct: 141 KNFPMDMSDDYETQQWPERKLKHMQFPPMYEENSRDNPFKR------TNEIVEEQYTPQS 194
Query: 443 WDFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSED 502
L+ + E G + ++ K+ +D Q + + + + ED
Sbjct: 195 L-ATLESVFQELGKLTGPNNQ----KRERMDEEQKLYTDDEDDIYKANNIAYEDVVGGED 249
Query: 503 EDQISQQIEDSNRMTIK-TKEKM-NNFYVERMAKLSGDRIVKNDD 545
+ + ++IE + ++ +KE + N + K SG ++ +D
Sbjct: 250 WNPVEEKIESQTQEEVRDSKENIEKNEQINDEMKRSGQLGIQEED 294
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 35.0 bits (79), Expect = 0.22
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 23/171 (13%)
Query: 374 NKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKSIQKYPANSMGNIP 433
+KK +R+ + +++ S+S + SSS + E Q K +K + +S +
Sbjct: 88 SKKRERKKKRKKKSCRSSSSSSSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTH 147
Query: 434 SEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRSTSYSPRPTDSCFS 493
E SK+S KSK + K+ + S R SY P D S
Sbjct: 148 ESESESKESVK-------------KKKKSKDETEKEKDVRSLSKKRKKSY---PDDKPLS 191
Query: 494 SSSDLPSEDEDQIS-------QQIEDSNRMTIKTKEKMNNFYVERMAKLSG 537
S S S+ E+ + ++ E + K K+K + + ++ K SG
Sbjct: 192 SESSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQHKKHSKKKKKKSG 242
>gi|229577238 tetratricopeptide repeat domain 18 [Homo sapiens]
Length = 1121
Score = 34.3 bits (77), Expect = 0.37
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 455 GGIYSLKSKRISTKKISLDSAQSSRSTSYSPRPTD----SCFSSSSDLPSEDEDQISQQI 510
GGI SL SK+ +K + D + PRP D S S SSD P E E +S
Sbjct: 396 GGINSLLSKQAVSKNLKEDKPVKEKDIDGRPRPGDVQAPSIKSQSSDTPLEGEPPLSHNP 455
Query: 511 E 511
E
Sbjct: 456 E 456
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 34.3 bits (77), Expect = 0.37
Identities = 69/331 (20%), Positives = 124/331 (37%), Gaps = 48/331 (14%)
Query: 308 LNIDEQRIKKTFNKCDYDSMGDTCVVTSSDK---NHVTDRCIRNIFTVPELTFSNSTLNK 364
L + +KK K D G T + S K ++ T+ + I V E T + +K
Sbjct: 103 LYTSKTHLKKAEYKKSKDEKGGTPLKKDSKKKGGSYATNPESKQI--VEEKTKRQNEADK 160
Query: 365 T----SYPEKCQPNKKYQREYNKNERNDLSTS---FENDYYPSSSERKEKFENDYQEKTP 417
T S+ + K E N +N + S + D S + +K E + + P
Sbjct: 161 TPLKSSHENEQSKKSKSSSETNPESQNSKTVSKNCSQKDKKDSKNSKKTNTEFLHTKNNP 220
Query: 418 QKSIQKYPANSMGNIPSEELHSKQSWDFGL--------DEILMEEGGIYSLKSKRISTKK 469
+K +++ + N P E+ S+ S + DE + + + + ++K
Sbjct: 221 KKDLKR---SKTSNDPISEICSENSLNVDFLMLVGQSDDESINFDAWLRNYSQN--NSKN 275
Query: 470 ISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSEDEDQISQ-------------QIEDSNRM 516
SL + T Y+ + T SSD SED + + +D +
Sbjct: 276 YSL------KYTKYTKKDTKKNAKKSSDAESEDSKDAKKDSKKVKKNVKKDDKKKDVKKD 329
Query: 517 TIKTKEKMNNFYVERMAKLSGDRIVKNDDKIHKQNENFYQFSVKNNTDQFPQLQCNSAHI 576
T T + + ER + +K DDK K++ Y S + + +S ++
Sbjct: 330 TESTDAESGDSKDERKDTKKDKKKLKKDDK--KKDTKKYPESTDTESGDAKDARNDSRNL 387
Query: 577 LQNKTNDNCVLQAARCDAGIQTESESVMEEK 607
+ ND+ A + T+SES +E K
Sbjct: 388 KKASKNDDKKKDAKKIT--FSTDSESELESK 416
>gi|4759264 COP9 constitutive photomorphogenic homolog subunit 2
isoform 1 [Homo sapiens]
Length = 443
Score = 33.9 bits (76), Expect = 0.48
Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 22/168 (13%)
Query: 371 CQPNKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKSIQKYPANSMG 430
C + Y EY+++ ++ + EN YY S + +++ K S QK
Sbjct: 10 CDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKED------DPKAALSSFQKV------ 57
Query: 431 NIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRSTSYSPRPTDS 490
E K W F + +++ + + ++ K L +S+ + +YS + +S
Sbjct: 58 ---LELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINS 114
Query: 491 CF-----SSSSDLPSEDEDQISQQIED--SNRMTIKTKEKMNNFYVER 531
S DL E + + ++D ++R+ KT K+ Y+ER
Sbjct: 115 ILDYISTSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLER 162
>gi|110349786 Alstrom syndrome 1 [Homo sapiens]
Length = 4169
Score = 33.1 bits (74), Expect = 0.83
Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 17/243 (6%)
Query: 157 VELPSNRHISKLNFTSGIAPTPQKLAYEKKQNDQRSTVNCSDSLLSKLNKSQDVFSPSHK 216
V+ S+ + ++ F+ G P L Y+ + + V L ++ S D
Sbjct: 3243 VKFASSSSVQQVTFSRGTDGQPLLLPYKPSGSTKMYYV----PQLRQIPPSPD------- 3291
Query: 217 TTRFGTLFERLNSLGNRNLLTKSPAVIM---DEDCRSTDEIRQSDYITEKHSIQHIWGKN 273
++ T E +S N + PA ++ D+D +T I+ + I K +
Sbjct: 3292 -SKSDTTVESSHSGSNDAIAPDFPAQVLGTRDDDLSATVNIKHKEGIYSKRVVTKASLPV 3350
Query: 274 G-KEVSNFLEDVNQSTPNLLSENCDSFVSQNMINVLNIDEQRIKKTFNKCDYDSMGDTCV 332
G K + N D + EN Q + + + E K D+ +
Sbjct: 3351 GEKPLQNENADASVQVLITGDENLSDKKQQEIHSTRAVTEAAQAKEKESLQKDTADSSAA 3410
Query: 333 VTSSDKNHVTDRCIRNIFTVPELTFSNSTLNKTSYPEKCQPNKKYQREYNKNERNDLSTS 392
+ V D ++N+ +T K + PE+ PN K + N E ++ +
Sbjct: 3411 AAAEHSAQVGDPEMKNLPDTKAITQKEEIHRKKTVPEEAWPNNKESLQIN-IEESECHSE 3469
Query: 393 FEN 395
FEN
Sbjct: 3470 FEN 3472
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 33.1 bits (74), Expect = 0.83
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 11/148 (7%)
Query: 408 FENDYQEKTPQKSIQKYPANSMGNIPSEELHSK--QSWDFGLDEILMEEGGIYSLKSKRI 465
FE DY E + ++ S GNI S++L K + LD + + GI +S
Sbjct: 1603 FEPDYNESDSESNVSVKEEESSGNI-SKDLKDKIVEKAKESLDTAAVVQVGISRNQSH-- 1659
Query: 466 STKKISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSEDEDQISQQIEDSNRMTIKTKEKMN 525
S S SRS S S T S SS+S S+D + ++ E K K K +
Sbjct: 1660 -----SSPSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKHKKHK-KHKKH 1713
Query: 526 NFYVERMAKLSGDRIVKNDDKIHKQNEN 553
+ +L + K+ K K+N++
Sbjct: 1714 KKHAGTEVELEKSQKHKHKKKKSKKNKD 1741
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 33.1 bits (74), Expect = 0.83
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 11/148 (7%)
Query: 408 FENDYQEKTPQKSIQKYPANSMGNIPSEELHSK--QSWDFGLDEILMEEGGIYSLKSKRI 465
FE DY E + ++ S GNI S++L K + LD + + GI +S
Sbjct: 1637 FEPDYNESDSESNVSVKEEESSGNI-SKDLKDKIVEKAKESLDTAAVVQVGISRNQSH-- 1693
Query: 466 STKKISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSEDEDQISQQIEDSNRMTIKTKEKMN 525
S S SRS S S T S SS+S S+D + ++ E K K K +
Sbjct: 1694 -----SSPSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKHKKHK-KHKKH 1747
Query: 526 NFYVERMAKLSGDRIVKNDDKIHKQNEN 553
+ +L + K+ K K+N++
Sbjct: 1748 KKHAGTEVELEKSQKHKHKKKKSKKNKD 1775
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 33.1 bits (74), Expect = 0.83
Identities = 68/401 (16%), Positives = 147/401 (36%), Gaps = 53/401 (13%)
Query: 177 TPQKLAYEKKQNDQRSTVNCSDSLLSKLNKSQDVFSPSHKTTRFGTLFERLNSLGNRNLL 236
+P+ + + + S SL S ++S+ S SH ++ + S
Sbjct: 689 SPRSRSRSSRSRSYSRSYTRSRSLASSHSRSRSPSSRSHSRNKYSDHSQCSRS------- 741
Query: 237 TKSPAVIMDEDCRSTDEIRQSDYITEKHSIQH----------IWGK--NGKEVSNFLEDV 284
+ ++ D+ R+ +R S +K+S+ H + K G++ S+ +
Sbjct: 742 SSYTSISSDDGRRAKRRLRSSG---KKNSVSHKKHSSSSEKTLHSKYVKGRDRSSCVRKY 798
Query: 285 NQSTPNL--LSENCDSFVSQNMINVLNIDEQRIKKTFNKCDYDSMGDTCVVTSSDKNHVT 342
++S +L S++ S V + ++++T NK + + G+ + + H
Sbjct: 799 SESRSSLDYSSDSEQSSVQATQSAQEKEKQGQMERTHNKQE-KNRGEEKSKSERECPHSK 857
Query: 343 DRCIRNIFTVPELTFSNSTLNKTSYPEKCQPNKKYQREYNKNERNDLSTSFENDYYPSSS 402
R ++ S+ N + K K+ E N D++ + +ND +PSS
Sbjct: 858 KRTLKE-------NLSDHLRNGSKPKRKNYAGSKWDSE--SNSERDVTKNSKNDSHPSSD 908
Query: 403 ERKEKFENDYQEKTPQKSIQKYPANSMGNIPSEELHSKQSWDFGLDEILMEEGGIYSLKS 462
+ + + +D + + + I+ P S L ++ G +
Sbjct: 909 KEEGEATSDSESEVSEIHIKVKPTTKSSTNTS----------------LPDDNGAWKSSK 952
Query: 463 KRISTKKISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSEDEDQISQQIEDSNRMTIKTKE 522
+R ST S S S + +P S +L E ++ ++++ K +
Sbjct: 953 QRTST---SDSEGSCSNSENNRGKPQKHKHGSKENLKREHTKKVKEKLKGKKDKKHKAPK 1009
Query: 523 KMNNFYVERMAKLSGDRIVKNDDKIHKQNENFYQFSVKNNT 563
+ F+ + + + + DDK Q + S N T
Sbjct: 1010 RKQAFHWQPPLEFGEEEEEEIDDKQVTQESKEKKVSENNET 1050
>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo
sapiens]
Length = 1555
Score = 33.1 bits (74), Expect = 0.83
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 30/161 (18%)
Query: 369 EKCQPNKKYQREYNKNERND--LSTSFENDYYPSSSERKEKFENDYQEKTPQKSIQKYPA 426
EK +P Q + K D L+ ++ + S RKE N + + S
Sbjct: 277 EKSRPGPSLQIQDLKGTNRDPRLNRISQHSHGKDQSHRKEFLMNTLNQSDTKTS------ 330
Query: 427 NSMGNIPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKKIS-LDSAQSSRSTSYSP 485
IPSE+L+S + S ++I+ K++ LDS S+S S SP
Sbjct: 331 ---KTIPSEKLNSSKQEK--------------SKSGEKITKKELDQLDS--KSKSKSKSP 371
Query: 486 RPTDSCFSSSSDLPSEDEDQISQQIEDSNRMTIKTKEKMNN 526
P + S + DL +++ + S ++ D N+ + K+ + +
Sbjct: 372 SPLKNKLSHTKDLKNQESE--SMRLSDMNKRDPRLKKHLQD 410
>gi|54124343 hypothetical protein LOC387680 [Homo sapiens]
Length = 1341
Score = 33.1 bits (74), Expect = 0.83
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 444 DFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSEDE 503
D GL E+ EEG + S + + T++ + +S + + SD +D+
Sbjct: 198 DVGLGELSSEEGSVGSDRGSIVDTEEEKEEEESDEDFAHHSDNEQNRHTTQMSDEEEDDD 257
Query: 504 --------DQISQQIEDSNRMTIKTKEKMNNFYVERMAKLSGDRIVKNDDK 546
++ + IED T + + +F E A++ GD + + D++
Sbjct: 258 GCDLFADSEKEEEDIEDIEENTRPKRSRPTSFADELAARIKGDAVGRVDEE 308
>gi|154090959 hypothetical protein LOC55747 [Homo sapiens]
Length = 1253
Score = 33.1 bits (74), Expect = 0.83
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 444 DFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSEDE 503
D GL E+ EEG + S + + T++ + +S + + SD +D+
Sbjct: 110 DVGLGELSSEEGSVGSDRGSIVDTEEEKEEEESDEDFAHHSDNEQNRHTTQMSDEEEDDD 169
Query: 504 --------DQISQQIEDSNRMTIKTKEKMNNFYVERMAKLSGDRIVKNDDK 546
++ + IED T + + +F E A++ GD + + D++
Sbjct: 170 GCDLFADSEKEEEDIEDIEENTRPKRSRPTSFADELAARIKGDAVGRVDEE 220
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 32.7 bits (73), Expect = 1.1
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 571 CNSAHILQNKTNDNCVLQAARCDAGIQTESESVMEEKLDVAIQCDLISKCTCRSD--VSL 628
C ILQ D+ +A Q E E E ++ ++ CD + C +SD S
Sbjct: 2505 CRGGRILQ----DDLTCRAVNSSCRAQDEFECANGECINFSLTCDGVPHCKDKSDEKPSY 2560
Query: 629 CNLERCSGNIKADTTG 644
CN RC + + G
Sbjct: 2561 CNSRRCKKTFRQCSNG 2576
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 32.7 bits (73), Expect = 1.1
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 362 LNKTSYPEKCQPNKKYQREYNKNERNDLSTSFENDYYPSSSERK----EKFENDYQEKTP 417
+ K P+K + K+ ++E K E+ + + + P +++ EK E +EK P
Sbjct: 669 IKKEEKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEP 728
Query: 418 QKSIQKYPANS 428
+K I+K P ++
Sbjct: 729 KKEIKKLPKDA 739
>gi|59814411 hypothetical protein LOC253725 [Homo sapiens]
Length = 1318
Score = 32.7 bits (73), Expect = 1.1
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 444 DFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSEDE 503
D GL E+ EEG + S + + T++ + +S + + SD +D+
Sbjct: 198 DVGLGELSSEEGSVGSDRGSIVDTEEEKEEEESDEDFAHHSDNEQNQHTTQMSDEEEDDD 257
Query: 504 --------DQISQQIEDSNRMTIKTKEKMNNFYVERMAKLSGDRIVKNDDK 546
++ + IED T + + +F E A++ GD + + D++
Sbjct: 258 GCDLFADSEKEEEDIEDIEENTRPKRSRPTSFADELAARIKGDAMGRVDEE 308
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 32.3 bits (72), Expect = 1.4
Identities = 50/242 (20%), Positives = 90/242 (37%), Gaps = 35/242 (14%)
Query: 13 IKQERRKQKEYFEKHRLKSK--MKSLGVLSPVKNSAVSLDILNLYMVNQI-SCKKKIPET 69
+K E + K HR S+ M+ N+ S+ + L+ N + S +P +
Sbjct: 6013 LKAEESQMKTQVITHRENSRLIMQKQKKELEASNAKQSIQLQKLFQRNVLDSFYSYVPLS 6072
Query: 70 VRKPTHVNMN--RDIKMPLRKHNLELTMSPHCVPSKLCLDDTETNVNCQRLSSKEDLGPV 127
++ RD+K L L + + H +P L + T N ++L L +
Sbjct: 6073 PKRKDQKGRLTIRDLKRELSTKYLTMKIQNHPIPQMLNITGRGTPSNRKKLEYDVKLKNI 6132
Query: 128 QSQGMD---------SYSMLH-----PQFSKIENCSFTPSSFSVELPSNRHISKL----- 168
S D S S++ P+ + F + P+ +SK
Sbjct: 6133 ASWSKDVSGIFIRSLSISIMRSPHTDPKTNLEREKRICLPKFQEKSPNTSEMSKRDTLTI 6192
Query: 169 -----NFTSGIAPTPQKLAYEKKQNDQRSTVNCSDSLLSKLNK------SQDVFSPSHKT 217
NFT+ + PQ A +K+Q + V +L S++NK +++ P H
Sbjct: 6193 VKGEQNFTNTVPQDPQPFAVDKQQMQKLPNVKSEANLRSEMNKKYLKAQTKERIVPEHDV 6252
Query: 218 TR 219
+R
Sbjct: 6253 SR 6254
>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 32.3 bits (72), Expect = 1.4
Identities = 50/242 (20%), Positives = 90/242 (37%), Gaps = 35/242 (14%)
Query: 13 IKQERRKQKEYFEKHRLKSK--MKSLGVLSPVKNSAVSLDILNLYMVNQI-SCKKKIPET 69
+K E + K HR S+ M+ N+ S+ + L+ N + S +P +
Sbjct: 5861 LKAEESQMKTQVITHRENSRLIMQKQKKELEASNAKQSIQLQKLFQRNVLDSFYSYVPLS 5920
Query: 70 VRKPTHVNMN--RDIKMPLRKHNLELTMSPHCVPSKLCLDDTETNVNCQRLSSKEDLGPV 127
++ RD+K L L + + H +P L + T N ++L L +
Sbjct: 5921 PKRKDQKGRLTIRDLKRELSTKYLTMKIQNHPIPQMLNITGRGTPSNRKKLEYDVKLKNI 5980
Query: 128 QSQGMD---------SYSMLH-----PQFSKIENCSFTPSSFSVELPSNRHISKL----- 168
S D S S++ P+ + F + P+ +SK
Sbjct: 5981 ASWSKDVSGIFIRSLSISIMRSPHTDPKTNLEREKRICLPKFQEKSPNTSEMSKRDTLTI 6040
Query: 169 -----NFTSGIAPTPQKLAYEKKQNDQRSTVNCSDSLLSKLNK------SQDVFSPSHKT 217
NFT+ + PQ A +K+Q + V +L S++NK +++ P H
Sbjct: 6041 VKGEQNFTNTVPQDPQPFAVDKQQMQKLPNVKSEANLRSEMNKKYLKAQTKERIVPEHDV 6100
Query: 218 TR 219
+R
Sbjct: 6101 SR 6102
>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 32.3 bits (72), Expect = 1.4
Identities = 50/242 (20%), Positives = 90/242 (37%), Gaps = 35/242 (14%)
Query: 13 IKQERRKQKEYFEKHRLKSK--MKSLGVLSPVKNSAVSLDILNLYMVNQI-SCKKKIPET 69
+K E + K HR S+ M+ N+ S+ + L+ N + S +P +
Sbjct: 5861 LKAEESQMKTQVITHRENSRLIMQKQKKELEASNAKQSIQLQKLFQRNVLDSFYSYVPLS 5920
Query: 70 VRKPTHVNMN--RDIKMPLRKHNLELTMSPHCVPSKLCLDDTETNVNCQRLSSKEDLGPV 127
++ RD+K L L + + H +P L + T N ++L L +
Sbjct: 5921 PKRKDQKGRLTIRDLKRELSTKYLTMKIQNHPIPQMLNITGRGTPSNRKKLEYDVKLKNI 5980
Query: 128 QSQGMD---------SYSMLH-----PQFSKIENCSFTPSSFSVELPSNRHISKL----- 168
S D S S++ P+ + F + P+ +SK
Sbjct: 5981 ASWSKDVSGIFIRSLSISIMRSPHTDPKTNLEREKRICLPKFQEKSPNTSEMSKRDTLTI 6040
Query: 169 -----NFTSGIAPTPQKLAYEKKQNDQRSTVNCSDSLLSKLNK------SQDVFSPSHKT 217
NFT+ + PQ A +K+Q + V +L S++NK +++ P H
Sbjct: 6041 VKGEQNFTNTVPQDPQPFAVDKQQMQKLPNVKSEANLRSEMNKKYLKAQTKERIVPEHDV 6100
Query: 218 TR 219
+R
Sbjct: 6101 SR 6102
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 32.3 bits (72), Expect = 1.4
Identities = 69/364 (18%), Positives = 129/364 (35%), Gaps = 41/364 (11%)
Query: 228 NSLGNRNLLTKSPAVIMDEDCRSTDEIRQSDYITEKHSIQHIWGKNGKEVSNFLEDVNQS 287
+SLG+ L SP V+ D S+ S T H G + + N +Q
Sbjct: 494 DSLGSSGCLKGSPLVLKDPSLFSS----LSASSTSSH------GSSAAQKQN-PSHTDQH 542
Query: 288 TPNLLSENCDSFVSQNMINVLNIDEQRIKKTFNKCDYDSMGDTCVVTSSDKNHVTDRCIR 347
T + ++N + S V ++ + + ++ DY S G + + R
Sbjct: 543 TKHWRTDNWKTISSPAWSEVSSLSDSTRTRLTSESDYSSEGSSVESLKPVRKRQEHRKRA 602
Query: 348 NIFTV--PELTFSNSTLNKTSYPEKCQPNKKYQREYNKNERNDLSTSFENDY------YP 399
++ P L+ + + K K K + ++ E+ S S E Y
Sbjct: 603 SLSEKKSPFLSSAEGAVPKLDKEGKVVKKHKTKHKHKNKEKGQCSISQELKLKSFTYEYE 662
Query: 400 SSSERKEK---FENDYQEKTPQKSIQKYPANSMGNIPSEELHSKQSWDFGLDEILMEEGG 456
S ++ +K END + K ++ + + EE SK L E+
Sbjct: 663 DSKQKSDKAILLENDLSTENKLKVLK----HDRDHFKKEEKLSKMK--------LEEKEW 710
Query: 457 IYSLKSKRISTKKISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSEDEDQISQQIEDSNRM 516
++ + K + D ++S R + S P E++ ++ ++
Sbjct: 711 LFKDEKSLKRIKDTNKDISRSFREEKDRSNKAEKERSLKEKSPKEEKLRLYKEER----- 765
Query: 517 TIKTKEKMNNFYVERMAKLSGDRIVKNDDKIHKQNENFYQFSVKNNTDQFPQLQCNSAHI 576
K K K +E+ L D+I K +KI K+++ + D CN
Sbjct: 766 --KKKSKDRPSKLEKKNDLKEDKISKEKEKIFKEDKEKLKKEKVYREDSAFDEYCNKNQF 823
Query: 577 LQNK 580
L+N+
Sbjct: 824 LENE 827
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 32.3 bits (72), Expect = 1.4
Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 13/153 (8%)
Query: 372 QPNKKYQREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQKSIQKYPANSMGN 431
Q +++Q N D S+S ++D S +RK+ + D+ Q S P+ S +
Sbjct: 109 QQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDW-----QMSGSGSPSQSGSD 163
Query: 432 IPSEELHSKQSWDFGLDEILMEEGGIYSLKSKRISTKKISLDSAQSSRSTSYSPRPTDSC 491
SEE K S D E Y K+K S K + +++ + +
Sbjct: 164 SESEEEREKSSCD--------ETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDS 215
Query: 492 FSSSSDLPSEDEDQISQQIEDSNRMTIKTKEKM 524
D D D+ S + + + ++ K E+M
Sbjct: 216 SEEDDDEEDYDNDKRSSRRQATVNVSYKEDEEM 248
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 32.0 bits (71), Expect = 1.8
Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 30/170 (17%)
Query: 80 RDIKMPLRKHNLELTMSPHCVPSKLCLDDTETNVNCQRLSSKEDLGPVQSQGMD------ 133
RD+K L L + + H +P L + T N ++L L + S D
Sbjct: 5933 RDLKRELSTKYLTMKIQNHPIPQMLNITGRGTPSNRKKLEYDVKLKNIASWSKDVSGIFI 5992
Query: 134 ---SYSMLH-----PQFSKIENCSFTPSSFSVELPSNRHISKL----------NFTSGIA 175
S S++ P+ + F + P+ +SK NFT+ +
Sbjct: 5993 RSLSISIMRSPHTDPKTNLEREKRICLPKFQEKSPNTSEMSKRDTLTIVKGEQNFTNTVP 6052
Query: 176 PTPQKLAYEKKQNDQRSTVNCSDSLLSKLNK------SQDVFSPSHKTTR 219
PQ A +K+Q + V +L S++NK +++ P H +R
Sbjct: 6053 QDPQPFAVDKQQMQKLPNVKSEANLRSEMNKKYLKAQTKERIVPEHDVSR 6102
>gi|212549782 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 32.0 bits (71), Expect = 1.8
Identities = 77/374 (20%), Positives = 147/374 (39%), Gaps = 68/374 (18%)
Query: 96 SPHCVPSKLCLDDTE---TNVNCQRLSSKEDLGPVQSQGMDSYSMLHPQFSKIENCSFTP 152
S CVPS+ CLD E T + ++ DL + L +F +I+ +F+
Sbjct: 45 SKSCVPSRNCLDLYEEILTEEGTAKEATYNDLQVEYGKCQLQMKELMKKFKEIQTQNFSL 104
Query: 153 SSFSVELPSNRHISKLNFTSGIAPTPQKLAYEKKQNDQRSTVNCSDSLLSKLNKSQDV-- 210
+ + L N IS L T+ R +N D +S L++
Sbjct: 105 INENQSLKKN--ISALIKTA------------------RVEINRKDEEISNLHQRLSEFP 144
Query: 211 -FSPSHKTTRFGTLFERLNSLGNRNLLTKSPAVIMDEDCRSTDEIRQSDYITEKHSIQHI 269
F +HKT R +++ ++L ++SP + +DC TD +SD + H +
Sbjct: 145 HFRNNHKTAR------TFDTVKTKDLKSRSPHL---DDCSKTDHRAKSDVSKDVHHSTSL 195
Query: 270 --WGKNGKEVSNFLEDVNQSTPNLLSENCDSFV-SQNMINV----LNIDEQRIKKTFNKC 322
K GK S+ + P + ++C + V S++ V N D +R +K
Sbjct: 196 PNLEKEGKPHSD--KRSTSHLPTSVEKHCTNGVWSRSHYQVGEGSSNEDSRRGRKD---- 249
Query: 323 DYDSMGDTCVVTSSDKNHVTDRCIRNIFT-----VPELTFSNSTLNKTSYPEKCQPNKKY 377
+ S N T+R +++ T P + ++ L +PEK +
Sbjct: 250 ----------IRHSQFNRGTERVRKDLSTGCGDGEPRILEASQRLQ--GHPEKYGKGEPK 297
Query: 378 QREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQ--KSIQKYPANSMGNIPSE 435
+ +++ + ++ + SS E++ E + Q K +++ S NI +
Sbjct: 298 TESKSSKFKSNSDSDYKGERINSSWEKETPGERSHSRVDSQSDKKLERQSERSQ-NINRK 356
Query: 436 ELHSKQSWDFGLDE 449
E+ S+ + +D+
Sbjct: 357 EVKSQDKEERKVDQ 370
>gi|6912288 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 32.0 bits (71), Expect = 1.8
Identities = 77/374 (20%), Positives = 147/374 (39%), Gaps = 68/374 (18%)
Query: 96 SPHCVPSKLCLDDTE---TNVNCQRLSSKEDLGPVQSQGMDSYSMLHPQFSKIENCSFTP 152
S CVPS+ CLD E T + ++ DL + L +F +I+ +F+
Sbjct: 45 SKSCVPSRNCLDLYEEILTEEGTAKEATYNDLQVEYGKCQLQMKELMKKFKEIQTQNFSL 104
Query: 153 SSFSVELPSNRHISKLNFTSGIAPTPQKLAYEKKQNDQRSTVNCSDSLLSKLNKSQDV-- 210
+ + L N IS L T+ R +N D +S L++
Sbjct: 105 INENQSLKKN--ISALIKTA------------------RVEINRKDEEISNLHQRLSEFP 144
Query: 211 -FSPSHKTTRFGTLFERLNSLGNRNLLTKSPAVIMDEDCRSTDEIRQSDYITEKHSIQHI 269
F +HKT R +++ ++L ++SP + +DC TD +SD + H +
Sbjct: 145 HFRNNHKTAR------TFDTVKTKDLKSRSPHL---DDCSKTDHRAKSDVSKDVHHSTSL 195
Query: 270 --WGKNGKEVSNFLEDVNQSTPNLLSENCDSFV-SQNMINV----LNIDEQRIKKTFNKC 322
K GK S+ + P + ++C + V S++ V N D +R +K
Sbjct: 196 PNLEKEGKPHSD--KRSTSHLPTSVEKHCTNGVWSRSHYQVGEGSSNEDSRRGRKD---- 249
Query: 323 DYDSMGDTCVVTSSDKNHVTDRCIRNIFT-----VPELTFSNSTLNKTSYPEKCQPNKKY 377
+ S N T+R +++ T P + ++ L +PEK +
Sbjct: 250 ----------IRHSQFNRGTERVRKDLSTGCGDGEPRILEASQRLQ--GHPEKYGKGEPK 297
Query: 378 QREYNKNERNDLSTSFENDYYPSSSERKEKFENDYQEKTPQ--KSIQKYPANSMGNIPSE 435
+ +++ + ++ + SS E++ E + Q K +++ S NI +
Sbjct: 298 TESKSSKFKSNSDSDYKGERINSSWEKETPGERSHSRVDSQSDKKLERQSERSQ-NINRK 356
Query: 436 ELHSKQSWDFGLDE 449
E+ S+ + +D+
Sbjct: 357 EVKSQDKEERKVDQ 370
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,707,835
Number of Sequences: 37866
Number of extensions: 1130253
Number of successful extensions: 3545
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 3305
Number of HSP's gapped (non-prelim): 165
length of query: 652
length of database: 18,247,518
effective HSP length: 109
effective length of query: 543
effective length of database: 14,120,124
effective search space: 7667227332
effective search space used: 7667227332
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.