Guide to the Human Genome
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Name: COPS2 Sequence: fasta or formatted (443aa) NCBI GI: 4759264
Description:

COP9 constitutive photomorphogenic homolog subunit 2 isoform 1

Referenced in:

Proteasome
Signalosome
Thyroid and Thyroid Hormone Receptor

Other entries for this name:
alt prot [450aa] COP9 constitutive photomorphogenic homolog subunit 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         22           2
 C cysteine            1.1          5           1
 D aspartate           7.2         32           2
 E glutamate           9.0         40           2
 F phenylalanine       3.4         15           2
 G glycine             3.6         16           2
 H histidine           2.3         10           1
 I isoleucine          6.8         30           1
 K lysine              9.3         41           2
 L leucine            12.0         53           2
 M methionine          3.2         14           2
 N asparagine          6.5         29           2
 P proline             2.7         12           1
 Q glutamine           5.2         23           1
 R arginine            3.8         17           2
 S serine              5.9         26           2
 T threonine           5.0         22           2
 V valine              2.9         13           2
 W tryptophan          0.7          3           1
 Y tyrosine            4.5         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   COP9 constitutive photomorphogenic homolog subunit 2 ... 
COPS2                 0.992   COP9 constitutive photomorphogenic homolog subunit ...
PSMD11                0.103   proteasome 26S non-ATPase subunit 11 
GPS1                  0.024   G protein pathway suppressor 1 isoform 2 
GPS1                  0.024   G protein pathway suppressor 1 isoform 1 
PSMD12                0.019   proteasome 26S non-ATPase subunit 12 isoform 1 
PSMD12                0.019   proteasome 26S non-ATPase subunit 12 isoform 2 [Homo...
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.016   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
DYNC1H1               0.016   cytoplasmic dynein 1 heavy chain 1 
VAV3                  0.013   vav 3 guanine nucleotide exchange factor isoform 1 ...
TRIP11                0.012   thyroid hormone receptor interactor 11 
C12orf40              0.010   hypothetical protein LOC283461 
EIF3E                 0.010   eukaryotic translation initiation factor 3, subunit 6...
MME                   0.009   membrane metallo-endopeptidase 
MME                   0.009   membrane metallo-endopeptidase 
MME                   0.009   membrane metallo-endopeptidase 
MME                   0.009   membrane metallo-endopeptidase 
EIF3M                 0.009   eukaryotic translation initiation factor 3, subunit ...
COPS7B                0.009   COP9 constitutive photomorphogenic homolog subunit 7...
PSMD6                 0.009   proteasome (prosome, macropain) 26S subunit, non-ATPa...
MYH15                 0.009   myosin, heavy polypeptide 15 
LMOD3                 0.009   leiomodin 3 (fetal) 
RGPD4                 0.008   RANBP2-like and GRIP domain containing 4 
APLF                  0.008   aprataxin and PNKP like factor 
RPGRIP1L              0.008   RPGRIP1-like isoform b 
RPGRIP1L              0.008   RPGRIP1-like isoform a 
MYBPC1                0.008   myosin binding protein C, slow type isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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