Guide to the Human Genome
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Name: C16orf35 Sequence: fasta or formatted (390aa) NCBI GI: 87116675
Description:

conserved gene telomeric to alpha globin cluster isoform 2

Referenced in:

Additional Conserved Proteins

Other entries for this name:
alt prot [569aa] conserved gene telomeric to alpha globin cluster isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         33           2
 C cysteine            1.8          7           1
 D aspartate           4.4         17           2
 E glutamate           6.2         24           3
 F phenylalanine       3.6         14           1
 G glycine             2.6         10           2
 H histidine           3.8         15           2
 I isoleucine          4.1         16           3
 K lysine              2.8         11           1
 L leucine            15.1         59           4
 M methionine          2.8         11           1
 N asparagine          3.6         14           2
 P proline             7.7         30           2
 Q glutamine           4.4         17           2
 R arginine            5.4         21           2
 S serine             10.3         40           2
 T threonine           3.6         14           2
 V valine              6.2         24           2
 W tryptophan          0.8          3           1
 Y tyrosine            2.6         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   conserved gene telomeric to alpha globin cluster iso... 
C16orf35              1.000   conserved gene telomeric to alpha globin cluster is...
CHEK2                 0.012   protein kinase CHK2 isoform c 
CHEK2                 0.012   protein kinase CHK2 isoform b 
CHEK2                 0.012   protein kinase CHK2 isoform a 
KDM5C                 0.008   jumonji, AT rich interactive domain 1C isoform 1 [H...
PHKA1                 0.008   phosphorylase kinase, alpha 1 (muscle) isoform 2 [H...
PHKA1                 0.008   phosphorylase kinase, alpha 1 (muscle) isoform 1 [H...
LOC100133280          0.007   PREDICTED: similar to Putative POM121-like protein ...
SPEN                  0.007   spen homolog, transcriptional regulator 
RBM15B                0.007   RNA binding motif protein 15B 
MAPKBP1               0.007   mitogen-activated protein kinase binding protein 1 ...
MAPKBP1               0.007   mitogen-activated protein kinase binding protein 1 ...
MTF1                  0.007   metal-regulatory transcription factor 1 
VPS13B                0.007   vacuolar protein sorting 13B isoform 5 
VPS13B                0.007   vacuolar protein sorting 13B isoform 1 
OSBPL9                0.007   oxysterol binding protein-like 9 isoform e 
OSBPL9                0.007   oxysterol binding protein-like 9 isoform f 
OSBPL9                0.007   oxysterol binding protein-like 9 isoform d 
OSBPL9                0.007   oxysterol binding protein-like 9 isoform c 
OSBPL9                0.007   oxysterol binding protein-like 9 isoform b 
OSBPL9                0.007   oxysterol binding protein-like 9 isoform a 
OSBPL9                0.007   oxysterol binding protein-like 9 isoform a 
BIN2                  0.007   bridging integrator 2 
RBM15                 0.005   RNA binding motif protein 15 
APOB                  0.005   apolipoprotein B precursor 
NBEAL2                0.005   neurobeachin-like 2 
KDM5D                 0.005   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.005   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5D                 0.005   jumonji, AT rich interactive domain 1D isoform 1 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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