Search of human proteins with 83700231

Search of human proteins with 83700231

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|83700231 cytotoxic T-lymphocyte-associated protein 4 isoform
b precursor [Homo sapiens]
         (174 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|83700231 cytotoxic T-lymphocyte-associated protein 4 isoform ...   357   4e-99
gi|21361212 cytotoxic T-lymphocyte-associated protein 4 isoform ...   313   6e-86
gi|5453611 CD28 antigen precursor [Homo sapiens]                       51   4e-07
gi|224586865 natural cytotoxicity triggering receptor 3 isoform ...    39   0.003
gi|24475832 natural cytotoxicity triggering receptor 3 isoform a...    39   0.003
gi|224586860 natural cytotoxicity triggering receptor 3 isoform ...    39   0.003
gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...    36   0.015
gi|32699028 V-set and immunoglobulin domain containing 1 [Homo s...    36   0.019
gi|238550100 transmembrane channel-like 7 isoform b [Homo sapiens]     33   0.095
gi|238550098 transmembrane channel-like 7 isoform a [Homo sapiens]     33   0.095
gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo...    32   0.21 
gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]        31   0.47 
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]         31   0.47 
gi|15029518 inducible T-cell co-stimulator precursor [Homo sapiens]    30   0.81 
gi|239757668 PREDICTED: similar to Ig lambda chain [Homo sapiens]      30   1.1  
gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]           30   1.4  
gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]           30   1.4  
gi|5453613 CD7 antigen precursor [Homo sapiens]                        30   1.4  
gi|221316762 neurotrimin isoform 4 [Homo sapiens]                      29   1.8  
gi|221316757 neurotrimin isoform 3 [Homo sapiens]                      29   1.8  
gi|239757664 PREDICTED: similar to hCG2040019 [Homo sapiens]           29   1.8  
gi|109633041 protein tyrosine phosphatase, receptor type, F isof...    29   1.8  
gi|109633039 protein tyrosine phosphatase, receptor type, F isof...    29   1.8  
gi|115298665 neurotrimin isoform 2 [Homo sapiens]                      29   1.8  
gi|7705413 neurotrimin isoform 1 [Homo sapiens]                        29   1.8  
gi|153085429 hepatitis A virus cellular receptor 1 [Homo sapiens]      29   2.3  
gi|153085427 hepatitis A virus cellular receptor 1 [Homo sapiens]      29   2.3  
gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens]           29   2.3  
gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens]           29   2.3  
gi|226371731 hydroxysteroid dehydrogenase like 1 isoform a [Homo...    29   2.3  

>gi|83700231 cytotoxic T-lymphocyte-associated protein 4 isoform b
           precursor [Homo sapiens]
          Length = 174

 Score =  357 bits (915), Expect = 4e-99
 Identities = 174/174 (100%), Positives = 174/174 (100%)

Query: 1   MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY 60
           MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY
Sbjct: 1   MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY 60

Query: 61  ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR 120
           ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR
Sbjct: 61  ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR 120

Query: 121 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIAKEKKPSYNRGLCENAPNRARM 174
           AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIAKEKKPSYNRGLCENAPNRARM
Sbjct: 121 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIAKEKKPSYNRGLCENAPNRARM 174


>gi|21361212 cytotoxic T-lymphocyte-associated protein 4 isoform a
           precursor [Homo sapiens]
          Length = 223

 Score =  313 bits (801), Expect = 6e-86
 Identities = 154/158 (97%), Positives = 154/158 (97%)

Query: 1   MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY 60
           MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY
Sbjct: 1   MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY 60

Query: 61  ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR 120
           ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR
Sbjct: 61  ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR 120

Query: 121 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIAKEKKP 158
           AMDTGLYICKVELMYPPPYYLGIGNGTQIYVI  E  P
Sbjct: 121 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCP 158


>gi|5453611 CD28 antigen precursor [Homo sapiens]
          Length = 220

 Score = 51.2 bits (121), Expect = 4e-07
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 5/123 (4%)

Query: 40  VAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLD 99
           V Q  +++A    + +  C+Y+    + E R ++ +  DS V EVC        +L    
Sbjct: 23  VKQSPMLVAYDNAV-NLSCKYSYNLFSREFRASLHKGLDSAV-EVCVVYGNYSQQLQVYS 80

Query: 100 DS--ICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG-IGNGTQIYVIAKEK 156
            +   C G      V   +Q L    T +Y CK+E+MYPPPY      NGT I+V  K  
Sbjct: 81  KTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYPPPYLDNEKSNGTIIHVKGKHL 140

Query: 157 KPS 159
            PS
Sbjct: 141 CPS 143


>gi|224586865 natural cytotoxicity triggering receptor 3 isoform c
           [Homo sapiens]
          Length = 190

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 10/141 (7%)

Query: 24  LLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY-ASPGKATEVRVTVLRQADSQVT 82
           LL  ++  P  C A+ V+QP  +       A   C + AS G+     VT  R       
Sbjct: 6   LLILIMVHPGSC-ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK 64

Query: 83  EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG 142
           EV   T      L  L  S        +Q  L I+ +R  D  +Y+C+VE++      LG
Sbjct: 65  EVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRDVRGHDASIYVCRVEVL-----GLG 116

Query: 143 IGNGTQIYVIAKEKKPSYNRG 163
           +G G    ++ +++ P    G
Sbjct: 117 VGTGNGTRLVVEKEHPQLGAG 137


>gi|24475832 natural cytotoxicity triggering receptor 3 isoform a
           [Homo sapiens]
          Length = 201

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 10/141 (7%)

Query: 24  LLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY-ASPGKATEVRVTVLRQADSQVT 82
           LL  ++  P  C A+ V+QP  +       A   C + AS G+     VT  R       
Sbjct: 6   LLILIMVHPGSC-ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK 64

Query: 83  EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG 142
           EV   T      L  L  S        +Q  L I+ +R  D  +Y+C+VE++      LG
Sbjct: 65  EVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRDVRGHDASIYVCRVEVL-----GLG 116

Query: 143 IGNGTQIYVIAKEKKPSYNRG 163
           +G G    ++ +++ P    G
Sbjct: 117 VGTGNGTRLVVEKEHPQLGAG 137


>gi|224586860 natural cytotoxicity triggering receptor 3 isoform b
           [Homo sapiens]
          Length = 177

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 10/141 (7%)

Query: 24  LLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY-ASPGKATEVRVTVLRQADSQVT 82
           LL  ++  P  C A+ V+QP  +       A   C + AS G+     VT  R       
Sbjct: 6   LLILIMVHPGSC-ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK 64

Query: 83  EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG 142
           EV   T      L  L  S        +Q  L I+ +R  D  +Y+C+VE++      LG
Sbjct: 65  EVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRDVRGHDASIYVCRVEVL-----GLG 116

Query: 143 IGNGTQIYVIAKEKKPSYNRG 163
           +G G    ++ +++ P    G
Sbjct: 117 VGTGNGTRLVVEKEHPQLGAG 137


>gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo
           sapiens]
          Length = 123

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 19/107 (17%)

Query: 32  PVFCKAMHVAQPAVVLASSRGIASFVCEYAS-PGKATEVRVTVLRQADSQVTEVCAATYM 90
           P F  A    +  +   +S+GI+S++  Y   PGKA ++ +              A+T  
Sbjct: 30  PSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLI------------YAASTLQ 77

Query: 91  MGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPP 137
            G    F      +G+ SG +  LTI  L+  D   Y C+    YPP
Sbjct: 78  SGVPSRF------SGSGSGTEFTLTISSLQPEDFATYYCQQLNSYPP 118


>gi|32699028 V-set and immunoglobulin domain containing 1 [Homo
           sapiens]
          Length = 387

 Score = 35.8 bits (81), Expect = 0.019
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 104 TGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNG-TQIYVIAKEKKP 158
           TG++     ++TI  ++  D+G+YIC V     PP +LG   G   + V+ K  KP
Sbjct: 91  TGSNDPGNASITISHMQPADSGIYICDVN---NPPDFLGQNQGILNVSVLVKPSKP 143


>gi|238550100 transmembrane channel-like 7 isoform b [Homo sapiens]
          Length = 613

 Score = 33.5 bits (75), Expect = 0.095
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 43  PAVVLASSRGIASFV----CEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFL 98
           P++V+  +  I   +      Y       E+R+T+LR    ++  +C   + +G+++T  
Sbjct: 300 PSIVITLANFITPMIFAKIIRYEDYSPGFEIRLTILRCVFMRLATICVLVFTLGSKITSC 359

Query: 99  DDSIC 103
           DD  C
Sbjct: 360 DDDTC 364


>gi|238550098 transmembrane channel-like 7 isoform a [Homo sapiens]
          Length = 723

 Score = 33.5 bits (75), Expect = 0.095
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 43  PAVVLASSRGIASFV----CEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFL 98
           P++V+  +  I   +      Y       E+R+T+LR    ++  +C   + +G+++T  
Sbjct: 410 PSIVITLANFITPMIFAKIIRYEDYSPGFEIRLTILRCVFMRLATICVLVFTLGSKITSC 469

Query: 99  DDSIC 103
           DD  C
Sbjct: 470 DDDTC 474


>gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo
           sapiens]
          Length = 1336

 Score = 32.3 bits (72), Expect = 0.21
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 61  ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNE--LTFLDDSICTGTSSGNQVNLTIQG 118
           A P    ++   V  +    V  V  A Y  G +  L FLD      TS  +  +  +  
Sbjct: 327 ARPSAVVQMGQNVSLRCRGPVDGVGLALYKKGEDKPLQFLD-----ATSIDDNTSFFLNN 381

Query: 119 LRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIAKEKKPS 159
           +   DTG+Y C   L +     +   N  ++ V+ K  KPS
Sbjct: 382 VTYSDTGIYSCHYLLTWKTSIRMPSHNTVELMVVDKPPKPS 422


>gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]
          Length = 209

 Score = 31.2 bits (69), Expect = 0.47
 Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 10/151 (6%)

Query: 17  TRTWPCTLLFFLL-FIPVFCKAMHVAQPAVVLASSRGIASFVCEYASP---GKATEVRVT 72
           +R W  ++L   L  +     A+ V  P  +  ++       C++ S    G  T V  +
Sbjct: 16  SRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWS 75

Query: 73  VLRQ-ADSQVT--EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYIC 129
              + AD+ V+          +GN   F D     G       ++ I+ ++ +  G YIC
Sbjct: 76  FQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDASINIENMQFIHNGTYIC 135

Query: 130 KVELMYPPPYYLGIGNGTQIYVIAKEKKPSY 160
            V+   PP   +  G+  ++YV+ KE  P +
Sbjct: 136 DVK--NPPDIVVQPGH-IRLYVVEKENLPVF 163


>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
          Length = 269

 Score = 31.2 bits (69), Expect = 0.47
 Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 10/151 (6%)

Query: 17  TRTWPCTLLFFLL-FIPVFCKAMHVAQPAVVLASSRGIASFVCEYASP---GKATEVRVT 72
           +R W  ++L   L  +     A+ V  P  +  ++       C++ S    G  T V  +
Sbjct: 16  SRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWS 75

Query: 73  VLRQ-ADSQVT--EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYIC 129
              + AD+ V+          +GN   F D     G       ++ I+ ++ +  G YIC
Sbjct: 76  FQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDASINIENMQFIHNGTYIC 135

Query: 130 KVELMYPPPYYLGIGNGTQIYVIAKEKKPSY 160
            V+   PP   +  G+  ++YV+ KE  P +
Sbjct: 136 DVK--NPPDIVVQPGH-IRLYVVEKENLPVF 163


>gi|15029518 inducible T-cell co-stimulator precursor [Homo sapiens]
          Length = 199

 Score = 30.4 bits (67), Expect = 0.81
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 52  GIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQ 111
           G    +C+Y  P    + ++ +L+    Q+      T   GN ++      C    S N 
Sbjct: 36  GGVQILCKY--PDIVQQFKMQLLK--GGQILCDLTKTKGSGNTVSIKSLKFCHSQLSNNS 91

Query: 112 VNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNG 146
           V+  +  L       Y C + +  PPP+ + +  G
Sbjct: 92  VSFFLYNLDHSHANYYFCNLSIFDPPPFKVTLTGG 126


>gi|239757668 PREDICTED: similar to Ig lambda chain [Homo sapiens]
          Length = 288

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 104 TGTSSGNQVNLTIQGLRAMDTGLYIC 129
           +G+ SGN  +LTI GL+A D   Y C
Sbjct: 84  SGSKSGNTASLTISGLQAEDEADYYC 109


>gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]
          Length = 230

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 114 LTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQI 149
           LTIQG+R  D G+Y C+ +       Y G G   ++
Sbjct: 108 LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRV 143


>gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]
          Length = 229

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 114 LTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQI 149
           LTIQG+R  D G+Y C+ +       Y G G   ++
Sbjct: 107 LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRV 142


>gi|5453613 CD7 antigen precursor [Homo sapiens]
          Length = 240

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 10/67 (14%)

Query: 108 SGNQVNLTI--QGLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIAKEKKPSYNRGLC 165
           SG+Q NLTI    L+  DTG Y C+  +     Y    G+GT + ++ +E+   ++R  C
Sbjct: 91  SGSQDNLTITMHRLQLSDTGTYTCQA-ITEVNVY----GSGT-LVLVTEEQSQGWHR--C 142

Query: 166 ENAPNRA 172
            +AP RA
Sbjct: 143 SDAPPRA 149


>gi|221316762 neurotrimin isoform 4 [Homo sapiens]
          Length = 316

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 64  GKATEVRVTVLRQADSQVTEVC----AATYMMGNELTFLDDSICTGTSSGNQVNLTIQGL 119
           G++  +R T+    D++VT V     +     GN+   LD  +   +++  Q ++ IQ +
Sbjct: 50  GESATLRCTI----DNRVTRVAWLNRSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNV 105

Query: 120 RAMDTGLYICKVE 132
              D G Y C V+
Sbjct: 106 DVYDEGPYTCSVQ 118


>gi|221316757 neurotrimin isoform 3 [Homo sapiens]
          Length = 355

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 64  GKATEVRVTVLRQADSQVTEVC----AATYMMGNELTFLDDSICTGTSSGNQVNLTIQGL 119
           G++  +R T+    D++VT V     +     GN+   LD  +   +++  Q ++ IQ +
Sbjct: 50  GESATLRCTI----DNRVTRVAWLNRSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNV 105

Query: 120 RAMDTGLYICKVE 132
              D G Y C V+
Sbjct: 106 DVYDEGPYTCSVQ 118


>gi|239757664 PREDICTED: similar to hCG2040019 [Homo sapiens]
          Length = 645

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 11/38 (28%)

Query: 103 CTGTSS-----------GNQVNLTIQGLRAMDTGLYIC 129
           CTGTSS           GN  ++TI GL+A D   Y C
Sbjct: 383 CTGTSSDVGHYNYVSCSGNMASMTISGLQAEDEADYYC 420



 Score = 26.9 bits (58), Expect = 8.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 104 TGTSSGNQVNLTIQGLRAMDTGLYIC 129
           +G+SSG  V LTI G +  D   Y C
Sbjct: 550 SGSSSGTTVTLTISGAQVEDEADYYC 575


>gi|109633041 protein tyrosine phosphatase, receptor type, F isoform
           1 precursor [Homo sapiens]
          Length = 1907

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 23/133 (17%)

Query: 32  PVFCKAMHVAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMM 91
           PVF K      P      S G+ASFVC+     K     +   ++  SQ  EV       
Sbjct: 33  PVFIKV-----PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGA 87

Query: 92  GNELTF------LDDSI--CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGI 143
           G+ L         D++I  CT T+S  ++N          T   +  +E    PP +  I
Sbjct: 88  GSVLRIQPLRVQRDEAIYECTATNSLGEIN----------TSAKLSVLEEEQLPPGFPSI 137

Query: 144 GNGTQIYVIAKEK 156
             G Q+ V+ K +
Sbjct: 138 DMGPQLKVVEKAR 150


>gi|109633039 protein tyrosine phosphatase, receptor type, F isoform
           2 precursor [Homo sapiens]
          Length = 1898

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 23/133 (17%)

Query: 32  PVFCKAMHVAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMM 91
           PVF K      P      S G+ASFVC+     K     +   ++  SQ  EV       
Sbjct: 33  PVFIKV-----PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGA 87

Query: 92  GNELTF------LDDSI--CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGI 143
           G+ L         D++I  CT T+S  ++N          T   +  +E    PP +  I
Sbjct: 88  GSVLRIQPLRVQRDEAIYECTATNSLGEIN----------TSAKLSVLEEEQLPPGFPSI 137

Query: 144 GNGTQIYVIAKEK 156
             G Q+ V+ K +
Sbjct: 138 DMGPQLKVVEKAR 150


>gi|115298665 neurotrimin isoform 2 [Homo sapiens]
          Length = 344

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 64  GKATEVRVTVLRQADSQVTEVC----AATYMMGNELTFLDDSICTGTSSGNQVNLTIQGL 119
           G++  +R T+    D++VT V     +     GN+   LD  +   +++  Q ++ IQ +
Sbjct: 50  GESATLRCTI----DNRVTRVAWLNRSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNV 105

Query: 120 RAMDTGLYICKVE 132
              D G Y C V+
Sbjct: 106 DVYDEGPYTCSVQ 118


>gi|7705413 neurotrimin isoform 1 [Homo sapiens]
          Length = 344

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 64  GKATEVRVTVLRQADSQVTEVC----AATYMMGNELTFLDDSICTGTSSGNQVNLTIQGL 119
           G++  +R T+    D++VT V     +     GN+   LD  +   +++  Q ++ IQ +
Sbjct: 50  GESATLRCTI----DNRVTRVAWLNRSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNV 105

Query: 120 RAMDTGLYICKVE 132
              D G Y C V+
Sbjct: 106 DVYDEGPYTCSVQ 118


>gi|153085429 hepatitis A virus cellular receptor 1 [Homo sapiens]
          Length = 364

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 92  GNELTFLDDSI--CTGTSSGNQVNLTIQGLRAMDTGLYICKVE 132
           G  +T+  D+     G  S   V+LTI+     D+G+Y C+VE
Sbjct: 66  GTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVE 108


>gi|153085427 hepatitis A virus cellular receptor 1 [Homo sapiens]
          Length = 364

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 92  GNELTFLDDSI--CTGTSSGNQVNLTIQGLRAMDTGLYICKVE 132
           G  +T+  D+     G  S   V+LTI+     D+G+Y C+VE
Sbjct: 66  GTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVE 108


>gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens]
          Length = 157

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 104 TGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPP 137
           +G+ SG    LTI  L+  D  +Y C+ +   PP
Sbjct: 89  SGSGSGTDFTLTISSLQPEDFAVYYCQQDYNLPP 122


>gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens]
          Length = 151

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 104 TGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPP 137
           +G+ SG    LTI  L+  D  +Y C+ +   PP
Sbjct: 84  SGSGSGTDFTLTISSLQPEDFAVYYCQQDYNLPP 117


>gi|226371731 hydroxysteroid dehydrogenase like 1 isoform a [Homo
           sapiens]
          Length = 330

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 44  AVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSIC 103
           AVV  ++ GI     E  +      + ++   +    V +  A TY +  ++   D    
Sbjct: 70  AVVSGATDGIGKAYAEELASRGLNIILISRNEEKLQVVAKDIADTYKVETDIIVAD---- 125

Query: 104 TGTSSGNQVNLTI-QGLRAMDTGLYICKVELMYPPPYY 140
              SSG ++ L I + L+  D G+ +  V + YP P Y
Sbjct: 126 --FSSGREIYLPIREALKDKDVGILVNNVGVFYPYPQY 161


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,690,840
Number of Sequences: 37866
Number of extensions: 254460
Number of successful extensions: 1013
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 94
length of query: 174
length of database: 18,247,518
effective HSP length: 95
effective length of query: 79
effective length of database: 14,650,248
effective search space: 1157369592
effective search space used: 1157369592
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.