Guide to the Human Genome
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Name: NRCAM Sequence: fasta or formatted (87aa) NCBI GI: 81158222
Description:

neuronal cell adhesion molecule isoform C

Referenced in:

Neurons

Other entries for this name:
alt prot [1183aa] neuronal cell adhesion molecule isoform B precursor
alt prot [1304aa] neuronal cell adhesion molecule isoform A precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6          4           1
 C cysteine            1.1          1           1
 D aspartate           9.2          8           2
 E glutamate          12.6         11           1
 F phenylalanine       4.6          4           1
 G glycine             9.2          8           1
 H histidine           1.1          1           1
 I isoleucine          1.1          1           1
 K lysine              9.2          8           2
 L leucine             3.4          3           1
 M methionine          2.3          2           1
 N asparagine          5.7          5           1
 P proline             5.7          5           1
 Q glutamine           2.3          2           1
 R arginine            3.4          3           1
 S serine             13.8         12           2
 T threonine           2.3          2           1
 V valine              5.7          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuronal cell adhesion molecule isoform C 
NRCAM                 0.890   neuronal cell adhesion molecule isoform A precursor ...
NRCAM                 0.890   neuronal cell adhesion molecule isoform B precursor ...
NFASC                 0.529   neurofascin isoform 3 precursor 
NFASC                 0.529   neurofascin isoform 2 precursor 
NFASC                 0.529   neurofascin isoform 4 precursor 
NFASC                 0.529   neurofascin isoform 1 precursor 
L1CAM                 0.394   L1 cell adhesion molecule isoform 1 precursor 
L1CAM                 0.355   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.355   L1 cell adhesion molecule isoform 2 precursor 
CHL1                  0.297   cell adhesion molecule with homology to L1CAM precur...
GAS2L2                0.032   growth arrest-specific 2 like 2 
DNAJC1                0.032   DnaJ (Hsp40) homolog, subfamily C, member 1 
RGL3                  0.026   ral guanine nucleotide dissociation stimulator-like...
RGL3                  0.026   ral guanine nucleotide dissociation stimulator-like...
MCM3AP                0.026   minichromosome maintenance complex component 3 assoc...
KIAA0748              0.019   hypothetical protein LOC9840 
KIAA0748              0.019   hypothetical protein LOC9840 
GNL2                  0.019   guanine nucleotide binding protein-like 2 (nucleolar)...
FAM21B                0.019   hypothetical protein LOC55747 
NAMPT                 0.013   nicotinamide phosphoribosyltransferase precursor [Hom...
UBTF                  0.013   upstream binding transcription factor, RNA polymera...
UBTF                  0.013   upstream binding transcription factor, RNA polymera...
UBTF                  0.013   upstream binding transcription factor, RNA polymerase...
SV2B                  0.013   synaptic vesicle protein 2B homolog 
SV2C                  0.013   synaptic vesicle glycoprotein 2C 
FAM21A                0.013   hypothetical protein LOC387680 
GTF3C3                0.013   general transcription factor IIIC, polypeptide 3, 102...
CTCF                  0.013   CCCTC-binding factor 
SRRT                  0.013   arsenate resistance protein 2 isoform d 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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