Search of human proteins with 77812674

Search of human proteins with 77812674

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|77812674 nucleolar protein family A, member 2 isoform b
[Homo sapiens]
         (90 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|77812674 nucleolar protein family A, member 2 isoform b [Homo...   184   1e-47
gi|8923444 nucleolar protein family A, member 2 isoform a [Homo ...   156   3e-39
gi|51317376 NHP2 non-histone chromosome protein 2-like 1 [Homo s...    41   2e-04
gi|4826860 NHP2 non-histone chromosome protein 2-like 1 [Homo sa...    41   2e-04
gi|18104948 ribosomal protein L21 [Homo sapiens]                       29   0.90 
gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo...    28   1.2  
gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo...    28   1.2  
gi|52353250 olfactory receptor, family 52, subfamily E, member 2...    27   3.4  
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [...    27   4.5  
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H...    27   4.5  
gi|90265805 phospholipase C, delta 1 isoform 2 [Homo sapiens]          27   4.5  
gi|195972883 phospholipase C, delta 1 isoform 1 [Homo sapiens]         27   4.5  
gi|46487911 zinc finger protein 406 isoform ZFAT-1 [Homo sapiens]      27   4.5  
gi|71480169 zinc finger protein 406 isoform TR-ZFAT [Homo sapiens]     27   4.5  
gi|187761324 shootin1 isoform a [Homo sapiens]                         27   4.5  
gi|50511340 shootin1 isoform b [Homo sapiens]                          27   4.5  
gi|221136785 upstream binding transcription factor, RNA polymera...    26   7.7  
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]                   26   7.7  
gi|28178825 isocitrate dehydrogenase 1 (NADP+), soluble [Homo sa...    25   10.0 
gi|21264357 mannan-binding lectin serine protease 1 isoform 1 pr...    25   10.0 
gi|38158015 mastermind-like 3 [Homo sapiens]                           25   10.0 

>gi|77812674 nucleolar protein family A, member 2 isoform b [Homo
          sapiens]
          Length = 90

 Score =  184 bits (467), Expect = 1e-47
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI 60
          MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI
Sbjct: 1  MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI 60

Query: 61 RRGVKEVQKFVNKGEKGTWVQPQAPSAPPV 90
          RRGVKEVQKFVNKGEKGTWVQPQAPSAPPV
Sbjct: 61 RRGVKEVQKFVNKGEKGTWVQPQAPSAPPV 90


>gi|8923444 nucleolar protein family A, member 2 isoform a [Homo
          sapiens]
          Length = 153

 Score =  156 bits (395), Expect = 3e-39
 Identities = 78/80 (97%), Positives = 78/80 (97%)

Query: 1  MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI 60
          MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI
Sbjct: 1  MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI 60

Query: 61 RRGVKEVQKFVNKGEKGTWV 80
          RRGVKEVQKFVNKGEKG  V
Sbjct: 61 RRGVKEVQKFVNKGEKGIMV 80


>gi|51317376 NHP2 non-histone chromosome protein 2-like 1 [Homo
          sapiens]
          Length = 128

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query: 32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKG 74
          NP A PLA   LT+KL   ++++   KQ+R+G  E  K +N+G
Sbjct: 7  NPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRG 49


>gi|4826860 NHP2 non-histone chromosome protein 2-like 1 [Homo
          sapiens]
          Length = 128

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query: 32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKG 74
          NP A PLA   LT+KL   ++++   KQ+R+G  E  K +N+G
Sbjct: 7  NPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRG 49


>gi|18104948 ribosomal protein L21 [Homo sapiens]
          Length = 160

 Score = 28.9 bits (63), Expect = 0.90
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 27  LLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEV-QKFVNKGEKGTWVQPQAP 85
           ++VN+    + LA R   R   + IK +  +    + VKE  QK     EKGTWVQ +  
Sbjct: 74  IVVNKQVKGKILAKRINVR--IEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQ 131

Query: 86  SAPP 89
            APP
Sbjct: 132 PAPP 135


>gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo
           sapiens]
          Length = 1591

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query: 9   DGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR 61
           + PE+   +   E   +E L + NPI+ P +   +   LY  +  A+  ++++
Sbjct: 726 ESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQ 778


>gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo
           sapiens]
          Length = 1594

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query: 9   DGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR 61
           + PE+   +   E   +E L + NPI+ P +   +   LY  +  A+  ++++
Sbjct: 726 ESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQ 778


>gi|52353250 olfactory receptor, family 52, subfamily E, member 2
           [Homo sapiens]
          Length = 325

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 33  PIAQPLASRRLTRKLYKCIKKAVKQKQ 59
           P+  P+     T+++YKC+KK + Q+Q
Sbjct: 286 PMLNPVIYGVRTKQIYKCVKKILLQEQ 312


>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
           [Homo sapiens]
          Length = 828

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 29  VNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGTWVQPQAPSAP 88
           V++ P+A+PL+  RL   L    +   + +++ R + E+ + + +  +G+  Q  A + P
Sbjct: 479 VDEGPVARPLSPTRLQPALPPEAQSVPELEEVARVLAEIPRPLKR--RGSMEQAPAVALP 536

Query: 89  P 89
           P
Sbjct: 537 P 537


>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
           sapiens]
          Length = 828

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 29  VNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGTWVQPQAPSAP 88
           V++ P+A+PL+  RL   L    +   + +++ R + E+ + + +  +G+  Q  A + P
Sbjct: 479 VDEGPVARPLSPTRLQPALPPEAQSVPELEEVARVLAEIPRPLKR--RGSMEQAPAVALP 536

Query: 89  P 89
           P
Sbjct: 537 P 537


>gi|90265805 phospholipase C, delta 1 isoform 2 [Homo sapiens]
          Length = 756

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 41  RRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNK 73
           ++L   ++ C++KA K K  +   KE+Q F+ +
Sbjct: 139 QKLQHWIHSCLRKADKNKDNKMSFKELQNFLKE 171


>gi|195972883 phospholipase C, delta 1 isoform 1 [Homo sapiens]
          Length = 777

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 41  RRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNK 73
           ++L   ++ C++KA K K  +   KE+Q F+ +
Sbjct: 160 QKLQHWIHSCLRKADKNKDNKMSFKELQNFLKE 192


>gi|46487911 zinc finger protein 406 isoform ZFAT-1 [Homo sapiens]
          Length = 1243

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 22  RTYQELLVNQNPIAQPLASRRL---TRKLYKC 50
           R YQE  + Q P  QP+ S RL     K++ C
Sbjct: 242 RGYQEYAIQQTPYEQPMKSSRLGPTQLKIFTC 273


>gi|71480169 zinc finger protein 406 isoform TR-ZFAT [Homo sapiens]
          Length = 846

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 22  RTYQELLVNQNPIAQPLASRRL---TRKLYKC 50
           R YQE  + Q P  QP+ S RL     K++ C
Sbjct: 230 RGYQEYAIQQTPYEQPMKSSRLGPTQLKIFTC 261


>gi|187761324 shootin1 isoform a [Homo sapiens]
          Length = 631

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 56  KQKQIRRGVKEVQKFVNKGEKGTWVQPQAPSAPPV 90
           K + ++  V E+QK VN+ E    V P  P  PP+
Sbjct: 330 KARNLKHSVDELQKRVNQSENS--VPPPPPPPPPL 362


>gi|50511340 shootin1 isoform b [Homo sapiens]
          Length = 456

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 56  KQKQIRRGVKEVQKFVNKGEKGTWVQPQAPSAPPV 90
           K + ++  V E+QK VN+ E    V P  P  PP+
Sbjct: 330 KARNLKHSVDELQKRVNQSENS--VPPPPPPPPPL 362


>gi|221136785 upstream binding transcription factor, RNA polymerase
           I-like 1 [Homo sapiens]
          Length = 393

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 3   KIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTR---KLYKCIKKAVKQKQ 59
           K +  PD P+    A +  R ++E     + +   + S+ LT+   K Y+ + + +KQK 
Sbjct: 92  KYRNGPDFPKRPLTAYN--RFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKY 149

Query: 60  IRRGVKEVQKFVNK 73
           I+   KE Q+F  K
Sbjct: 150 IQDFRKEKQEFEEK 163


>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
          Length = 1318

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 8    PD-GPEAQAEACSGERTYQELLVNQNPIAQ 36
            PD GP A+A A    R +QEL   + P+ +
Sbjct: 1231 PDLGPAAEAAASQASRIWQELEAEEEPVPE 1260


>gi|28178825 isocitrate dehydrogenase 1 (NADP+), soluble [Homo
           sapiens]
          Length = 414

 Score = 25.4 bits (54), Expect = 10.0
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 1   MTKIKADPDGPEAQAEACSG--ERTYQELLVNQNPIAQPLAS 40
           MT +   PDG   +AEA  G   R Y+     Q     P+AS
Sbjct: 291 MTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIAS 332


>gi|21264357 mannan-binding lectin serine protease 1 isoform 1
           precursor [Homo sapiens]
          Length = 699

 Score = 25.4 bits (54), Expect = 10.0
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 8   PDGPEAQAEACS----GERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRG 63
           P+GP+ +         G++  Q        I  P+      +K Y  +KK V +  I  G
Sbjct: 574 PEGPQQEGAMVIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAG 633

Query: 64  VKEVQKFVNKGEKG 77
            KE  K    G+ G
Sbjct: 634 EKEGGKDACAGDSG 647


>gi|38158015 mastermind-like 3 [Homo sapiens]
          Length = 1133

 Score = 25.4 bits (54), Expect = 10.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 6   ADPDGPEAQAEACSGERTYQELLVNQNPIAQPLAS 40
           + P G    AE  +    Y +   NQNPI  P+A+
Sbjct: 521 SSPYGAAFTAEKPNSPMMYPQAFNNQNPIVPPMAN 555


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,849,881
Number of Sequences: 37866
Number of extensions: 130232
Number of successful extensions: 328
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 22
length of query: 90
length of database: 18,247,518
effective HSP length: 62
effective length of query: 28
effective length of database: 15,899,826
effective search space: 445195128
effective search space used: 445195128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.