Guide to the Human Genome
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Name: IDH1 Sequence: fasta or formatted (414aa) NCBI GI: 28178825
Description:

isocitrate dehydrogenase 1 (NADP+), soluble

Referenced in:

Peroxisomes
TCA Cycle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         31           2
 C cysteine            1.2          5           1
 D aspartate           6.0         25           2
 E glutamate           7.0         29           2
 F phenylalanine       4.1         17           2
 G glycine             8.0         33           3
 H histidine           2.2          9           1
 I isoleucine          7.2         30           3
 K lysine              8.9         37           2
 L leucine             6.5         27           1
 M methionine          3.4         14           2
 N asparagine          4.1         17           2
 P proline             2.9         12           1
 Q glutamine           4.3         18           1
 R arginine            3.6         15           1
 S serine              5.3         22           2
 T threonine           5.8         24           1
 V valine              6.0         25           2
 W tryptophan          1.7          7           1
 Y tyrosine            4.1         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   isocitrate dehydrogenase 1 (NADP+), soluble 
IDH2                  0.684   isocitrate dehydrogenase 2 (NADP+), mitochondrial pr...
CRYBG3                0.010   beta-gamma crystallin domain containing 3 
KRT28                 0.006   keratin 25D 
MTR                   0.006   5-methyltetrahydrofolate-homocysteine methyltransfe...
POLR3B                0.005   DNA-directed RNA polymerase III B isoform 2 
POLR3B                0.005   DNA-directed RNA polymerase III B isoform 1 
MRPL22                0.005   mitochondrial ribosomal protein L22 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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