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Search of human proteins with 77539055
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
(128 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 262 5e-71
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 262 5e-71
gi|67191208 ubiquitin C [Homo sapiens] 152 7e-38
gi|11024714 ubiquitin B precursor [Homo sapiens] 151 1e-37
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 151 2e-37
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 151 2e-37
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens] 134 2e-32
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens] 134 2e-32
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens] 134 2e-32
gi|5453760 neural precursor cell expressed, developmentally down... 96 6e-21
gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens] 73 7e-14
gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens] 73 7e-14
gi|7657667 ubiquitin-like 4 [Homo sapiens] 63 7e-11
gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens] 57 4e-09
gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30... 52 1e-07
gi|222352096 ubiquitin D [Homo sapiens] 52 2e-07
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi... 52 2e-07
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i... 51 2e-07
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i... 51 2e-07
gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo... 51 3e-07
gi|169790971 parkin isoform 2 [Homo sapiens] 50 4e-07
gi|169790969 parkin isoform 1 [Homo sapiens] 50 4e-07
gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [H... 49 1e-06
gi|44662819 ubiquitin-like 4B [Homo sapiens] 49 1e-06
gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom... 48 2e-06
gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo... 48 2e-06
gi|13376439 ubiquitin domain containing 1 [Homo sapiens] 48 2e-06
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 47 4e-06
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 47 4e-06
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 47 4e-06
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 262 bits (670), Expect = 5e-71
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 120
IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 120
Query: 121 LRPKKKVK 128
LRPKKKVK
Sbjct: 121 LRPKKKVK 128
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 262 bits (670), Expect = 5e-71
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 120
IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 120
Query: 121 LRPKKKVK 128
LRPKKKVK
Sbjct: 121 LRPKKKVK 128
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 152 bits (384), Expect = 7e-38
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 61 IQKESTLHLVLRLRGGI 77
IQKESTLHLVLRLRGG+
Sbjct: 669 IQKESTLHLVLRLRGGV 685
Score = 151 bits (382), Expect = 1e-37
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGI 77
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77
Score = 151 bits (382), Expect = 1e-37
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 61 IQKESTLHLVLRLRGGI 77
IQKESTLHLVLRLRGG+
Sbjct: 137 IQKESTLHLVLRLRGGM 153
Score = 151 bits (382), Expect = 1e-37
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 61 IQKESTLHLVLRLRGGI 77
IQKESTLHLVLRLRGG+
Sbjct: 289 IQKESTLHLVLRLRGGM 305
Score = 151 bits (382), Expect = 1e-37
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 61 IQKESTLHLVLRLRGGI 77
IQKESTLHLVLRLRGG+
Sbjct: 365 IQKESTLHLVLRLRGGM 381
Score = 151 bits (382), Expect = 1e-37
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 61 IQKESTLHLVLRLRGGI 77
IQKESTLHLVLRLRGG+
Sbjct: 441 IQKESTLHLVLRLRGGM 457
Score = 151 bits (382), Expect = 1e-37
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 61 IQKESTLHLVLRLRGGI 77
IQKESTLHLVLRLRGG+
Sbjct: 517 IQKESTLHLVLRLRGGM 533
Score = 151 bits (382), Expect = 1e-37
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 61 IQKESTLHLVLRLRGGI 77
IQKESTLHLVLRLRGG+
Sbjct: 593 IQKESTLHLVLRLRGGM 609
Score = 148 bits (374), Expect = 1e-36
Identities = 75/77 (97%), Positives = 76/77 (98%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP DQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYN 212
Query: 61 IQKESTLHLVLRLRGGI 77
IQKESTLHLVLRLRGG+
Sbjct: 213 IQKESTLHLVLRLRGGM 229
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 151 bits (382), Expect = 1e-37
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGI 77
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77
Score = 151 bits (382), Expect = 1e-37
Identities = 76/77 (98%), Positives = 77/77 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 61 IQKESTLHLVLRLRGGI 77
IQKESTLHLVLRLRGG+
Sbjct: 137 IQKESTLHLVLRLRGGM 153
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 134 bits (337), Expect = 2e-32
Identities = 74/105 (70%), Positives = 81/105 (77%), Gaps = 5/105 (4%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 61 IQKESTLHLVLRLRGGIIE-----PSLRQLAQKYNCDKMICRKCY 100
IQKE TLHL+LRL G + P+ ++ K K+ KCY
Sbjct: 129 IQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCY 173
>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 134 bits (337), Expect = 2e-32
Identities = 74/105 (70%), Positives = 81/105 (77%), Gaps = 5/105 (4%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 61 IQKESTLHLVLRLRGGIIE-----PSLRQLAQKYNCDKMICRKCY 100
IQKE TLHL+LRL G + P+ ++ K K+ KCY
Sbjct: 129 IQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCY 173
>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 134 bits (337), Expect = 2e-32
Identities = 74/105 (70%), Positives = 81/105 (77%), Gaps = 5/105 (4%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 61 IQKESTLHLVLRLRGGIIE-----PSLRQLAQKYNCDKMICRKCY 100
IQKE TLHL+LRL G + P+ ++ K K+ KCY
Sbjct: 129 IQKEPTLHLLLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCY 173
>gi|5453760 neural precursor cell expressed, developmentally
down-regulated 8 [Homo sapiens]
Length = 81
Score = 96.3 bits (238), Expect = 6e-21
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 61 IQKESTLHLVLRLRGG 76
I S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76
>gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens]
Length = 727
Score = 72.8 bits (177), Expect = 7e-14
Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M++F++TLTG L V P +T+ +VKAKI+ EGIP +Q LI+ +LE+ L+DYN
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 61 IQKESTLHLVLRLRGGII 78
I + TL LVL +RGG I
Sbjct: 88 ISEGCTLKLVLAMRGGPI 105
>gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens]
Length = 727
Score = 72.8 bits (177), Expect = 7e-14
Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M++F++TLTG L V P +T+ +VKAKI+ EGIP +Q LI+ +LE+ L+DYN
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 61 IQKESTLHLVLRLRGGII 78
I + TL LVL +RGG I
Sbjct: 88 ISEGCTLKLVLAMRGGPI 105
>gi|7657667 ubiquitin-like 4 [Homo sapiens]
Length = 157
Score = 62.8 bits (151), Expect = 7e-11
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
Query: 61 IQKESTLHLVLR 72
I S L+LV++
Sbjct: 61 IGPNSKLNLVVK 72
>gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
Length = 165
Score = 57.0 bits (136), Expect = 4e-09
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+ I V+ G++ T EV + T+ ++K ++ EG+ D L F GK LED L +Y
Sbjct: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
Query: 61 IQKESTLHLVLRLRGGIIEPSLR 83
++ ST+ + LRLRGG EP R
Sbjct: 142 LKPLSTVFMNLRLRGGGTEPGGR 164
>gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30
precursor [Homo sapiens]
Length = 133
Score = 52.0 bits (123), Expect = 1e-07
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
Query: 61 IQKESTLHLVLRLRGGIIEPSL 82
++ +TL + R+ GG + SL
Sbjct: 59 VEALTTLEVAGRMLGGKVHGSL 80
>gi|222352096 ubiquitin D [Homo sapiens]
Length = 165
Score = 51.6 bits (122), Expect = 2e-07
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
Query: 63 KESTLHLVLRLRGGIIEPSLRQL 85
KE T+HL L+ +++PS +L
Sbjct: 70 KEKTIHLTLK----VVKPSDEEL 88
Score = 50.4 bits (119), Expect = 4e-07
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
L+V S ++ VKA I+ K GI P+ Q + GK+LEDG+ ++DY I+K + L L
Sbjct: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCI 163
Query: 75 GG 76
GG
Sbjct: 164 GG 165
>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
sapiens]
Length = 409
Score = 51.6 bits (122), Expect = 2e-07
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
MQ+ +KTL +T ++++P +T++ +K KI+ ++G P Q+LI+AGK L D L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 58 DYNIQKES 65
+Y I +++
Sbjct: 61 EYKIDEKN 68
>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
isoform 1 [Homo sapiens]
Length = 793
Score = 51.2 bits (121), Expect = 2e-07
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 1 MQIFVKTLTGK-TITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 58
M I V+T+ G+ T T++ + +E ++ KIQ+ + P QRL + GKQ+EDG TL D
Sbjct: 1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60
Query: 59 YNIQKESTLHLVLR 72
Y ++ T+ L++R
Sbjct: 61 YEVRLNDTIQLLVR 74
>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
isoform 2 [Homo sapiens]
Length = 806
Score = 51.2 bits (121), Expect = 2e-07
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 1 MQIFVKTLTGK-TITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 58
M I V+T+ G+ T T++ + +E ++ KIQ+ + P QRL + GKQ+EDG TL D
Sbjct: 14 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 73
Query: 59 YNIQKESTLHLVLR 72
Y ++ T+ L++R
Sbjct: 74 YEVRLNDTIQLLVR 87
>gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo
sapiens]
Length = 514
Score = 50.8 bits (120), Expect = 3e-07
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D L Y
Sbjct: 434 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 493
Query: 61 IQKESTLHL 69
IQ TL L
Sbjct: 494 IQDSDTLIL 502
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 50.4 bits (119), Expect = 4e-07
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 61 IQKESTLHLVLR 72
+ ++S +H+V R
Sbjct: 61 LDQQSIVHIVQR 72
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 50.4 bits (119), Expect = 4e-07
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 61 IQKESTLHLVLR 72
+ ++S +H+V R
Sbjct: 61 LDQQSIVHIVQR 72
>gi|23312364 ubiquitin-like with PHD and ring finger domains 2
[Homo sapiens]
Length = 802
Score = 48.9 bits (115), Expect = 1e-06
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 1 MQIFVKTLTG-KTITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 58
M I V+T+ G KT T+E V TIE ++ ++ + P+ QRL + GKQLE+G TL D
Sbjct: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60
Query: 59 YNIQKESTLHLVLR 72
Y++ + L++R
Sbjct: 61 YDVGLNDIIQLLVR 74
>gi|44662819 ubiquitin-like 4B [Homo sapiens]
Length = 174
Score = 48.5 bits (114), Expect = 1e-06
Identities = 22/72 (30%), Positives = 45/72 (62%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M + VK L G+ +L+V +++ +K + + +P +QQ L+F G+ LED + LSDY
Sbjct: 1 MFLTVKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDYC 60
Query: 61 IQKESTLHLVLR 72
I ++++++++
Sbjct: 61 IGPNASINVIMQ 72
>gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Homo
sapiens]
Length = 728
Score = 48.1 bits (113), Expect = 2e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
L G+ + + +D + +K KI + G+P +Q+L + G ++D +L+ YN+ + +
Sbjct: 657 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 716
Query: 68 HLVLRLRGG 76
HL L+ RGG
Sbjct: 717 HLALKERGG 725
>gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo
sapiens]
Length = 793
Score = 48.1 bits (113), Expect = 2e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
L G+ + + +D + +K KI + G+P +Q+L + G ++D +L+ YN+ + +
Sbjct: 722 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 781
Query: 68 HLVLRLRGG 76
HL L+ RGG
Sbjct: 782 HLALKERGG 790
>gi|13376439 ubiquitin domain containing 1 [Homo sapiens]
Length = 227
Score = 48.1 bits (113), Expect = 2e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
Query: 65 STLHLVL 71
+ +++
Sbjct: 213 FVIQVII 219
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 47.0 bits (110), Expect = 4e-06
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 61 IQKESTLHLVLR 72
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 47.0 bits (110), Expect = 4e-06
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 61 IQKESTLHLVLR 72
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 47.0 bits (110), Expect = 4e-06
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 61 IQKESTLHLVLR 72
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,011,761
Number of Sequences: 37866
Number of extensions: 205936
Number of successful extensions: 616
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 90
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.