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Search of human proteins with 7710154
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7710154 mitochondrial tryptophanyl tRNA synthetase 2 isoform
1 precursor [Homo sapiens]
(360 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7710154 mitochondrial tryptophanyl tRNA synthetase 2 isoform ... 705 0.0
gi|41352700 mitochondrial tryptophanyl tRNA synthetase 2 isoform... 425 e-119
gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo... 34 0.18
gi|10835197 5-hydroxytryptamine (serotonin) receptor 1F [Homo sa... 32 1.2
gi|167900452 phospholipase C-like 1 isoform a [Homo sapiens] 31 1.5
gi|167900450 phospholipase C-like 1 isoform b [Homo sapiens] 31 1.5
gi|24497609 nucleoporin 62kDa [Homo sapiens] 30 2.6
gi|24497607 nucleoporin 62kDa [Homo sapiens] 30 2.6
gi|24497605 nucleoporin 62kDa [Homo sapiens] 30 2.6
gi|24497603 nucleoporin 62kDa [Homo sapiens] 30 2.6
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 30 2.6
gi|23397456 IQ motif containing K [Homo sapiens] 30 2.6
gi|20149640 dual oxidase 1 precursor [Homo sapiens] 29 5.7
gi|28872751 dual oxidase 1 precursor [Homo sapiens] 29 5.7
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 29 5.7
gi|13124883 HsKin17 protein [Homo sapiens] 29 5.7
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 29 7.5
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 29 7.5
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 29 7.5
gi|112293277 DnaJ (Hsp40) homolog, subfamily C, member 8 [Homo s... 29 7.5
gi|48762942 huntingtin interacting protein-1-related [Homo sapiens] 28 9.8
gi|239750456 PREDICTED: similar to KIAA0655 protein [Homo sapiens] 28 9.8
>gi|7710154 mitochondrial tryptophanyl tRNA synthetase 2 isoform 1
precursor [Homo sapiens]
Length = 360
Score = 705 bits (1820), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV 60
MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV
Sbjct: 1 MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV 60
Query: 61 RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 120
RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH
Sbjct: 61 RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 120
Query: 121 TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE 180
TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE
Sbjct: 121 TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE 180
Query: 181 DQVQHMELVQDLAQGFNKKYGEFFPVPESILTSMKKVKSLRDPSAKMSKSDPDKLATVRI 240
DQVQHMELVQDLAQGFNKKYGEFFPVPESILTSMKKVKSLRDPSAKMSKSDPDKLATVRI
Sbjct: 181 DQVQHMELVQDLAQGFNKKYGEFFPVPESILTSMKKVKSLRDPSAKMSKSDPDKLATVRI 240
Query: 241 TDSPEEIVQKFRKAVTDFTSEVTYDPAGRAGVSNIVAVHAAVTGLSVEEVVRRSAGMNTA 300
TDSPEEIVQKFRKAVTDFTSEVTYDPAGRAGVSNIVAVHAAVTGLSVEEVVRRSAGMNTA
Sbjct: 241 TDSPEEIVQKFRKAVTDFTSEVTYDPAGRAGVSNIVAVHAAVTGLSVEEVVRRSAGMNTA 300
Query: 301 RYKLAVADAVIEKFAPIKREIEKLKLDKDHLEKVLQIGSAKAKELAYTVCQEVKKLVGFL 360
RYKLAVADAVIEKFAPIKREIEKLKLDKDHLEKVLQIGSAKAKELAYTVCQEVKKLVGFL
Sbjct: 301 RYKLAVADAVIEKFAPIKREIEKLKLDKDHLEKVLQIGSAKAKELAYTVCQEVKKLVGFL 360
>gi|41352700 mitochondrial tryptophanyl tRNA synthetase 2 isoform 2
precursor [Homo sapiens]
Length = 220
Score = 425 bits (1093), Expect = e-119
Identities = 211/212 (99%), Positives = 212/212 (100%)
Query: 1 MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV 60
MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV
Sbjct: 1 MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV 60
Query: 61 RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 120
RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH
Sbjct: 61 RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 120
Query: 121 TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE 180
TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE
Sbjct: 121 TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE 180
Query: 181 DQVQHMELVQDLAQGFNKKYGEFFPVPESILT 212
DQVQHMELVQDLAQGFNKKYGEFFPVPESIL+
Sbjct: 181 DQVQHMELVQDLAQGFNKKYGEFFPVPESILS 212
>gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo
sapiens]
Length = 1297
Score = 34.3 bits (77), Expect = 0.18
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 110 ILFQQSQVSEHTQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYP 161
I+ Q+ + L W+LSC+ L R Q L W T Q + G + +P
Sbjct: 197 IMSAQASSGSTSVLRWVLSCLATLLRKQDLEAWGYPVTLQVYHGLLSFTVHP 248
>gi|10835197 5-hydroxytryptamine (serotonin) receptor 1F [Homo
sapiens]
Length = 366
Score = 31.6 bits (70), Expect = 1.2
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 51/229 (22%)
Query: 57 ESWVRLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQ 116
ESW+ Q D ++ VD+ T SIL ++A+ L ++ + + +
Sbjct: 87 ESWIMGQVVCD--IWLSVDITCCTC---------SILHLSAIALDRYRAITDAVEYARKR 135
Query: 117 VSEHTQLS----WILSCMVRLPRLQHLHQWKAKTTKQ--KHDGTVG-------------- 156
+H + WI+S + +P L HQ ++ + KHD V
Sbjct: 136 TPKHAGIMITIVWIISVFISMPPLFWRHQGTSRDDECIIKHDHIVSTIYSTFGAFYIPLA 195
Query: 157 ---LLTYPVLQAADILLYKSTHVPVGEDQVQHMELVQDLAQGFNKKYGEFFPVPESILTS 213
+L Y + +AA L +K + +++V L++ GE +S+ TS
Sbjct: 196 LILILYYKIYRAAKTLYHKRQASRIAKEEVNGQVLLES---------GE--KSTKSVSTS 244
Query: 214 MKKVKSLRDPSAKMSKSDPDKL-ATVRITDSPEEIVQKFRKAVTDFTSE 261
KSL DPS +D DK+ +TVR S + + +R+ T E
Sbjct: 245 YVLEKSLSDPS-----TDFDKIHSTVRSLRSEFKHEKSWRRQKISGTRE 288
>gi|167900452 phospholipase C-like 1 isoform a [Homo sapiens]
Length = 1095
Score = 31.2 bits (69), Expect = 1.5
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 184 QHMELVQDLAQGFNKKYGEFFPVP-ESILTSMKKVKSLRDPSAKMSKSDPDKLATVRITD 242
Q + Q + + F K P+P ES L S +K+K + K SDPD L +TD
Sbjct: 499 QQKVMAQQMKKVFGNKLYTEAPLPSESYLPSPEKLKRMIIVKGKKLPSDPDVLEG-EVTD 557
Query: 243 SPEEIVQKFRKAVTDFTSE 261
EE + R+ D+ E
Sbjct: 558 EDEE-AEMSRRMSVDYNGE 575
>gi|167900450 phospholipase C-like 1 isoform b [Homo sapiens]
Length = 997
Score = 31.2 bits (69), Expect = 1.5
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 184 QHMELVQDLAQGFNKKYGEFFPVP-ESILTSMKKVKSLRDPSAKMSKSDPDKLATVRITD 242
Q + Q + + F K P+P ES L S +K+K + K SDPD L +TD
Sbjct: 401 QQKVMAQQMKKVFGNKLYTEAPLPSESYLPSPEKLKRMIIVKGKKLPSDPDVLEG-EVTD 459
Query: 243 SPEEIVQKFRKAVTDFTSE 261
EE + R+ D+ E
Sbjct: 460 EDEE-AEMSRRMSVDYNGE 477
>gi|24497609 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 30.4 bits (67), Expect = 2.6
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 312 EKFAPIKREIEKLKLDKDHLEKVLQIGSAKAKEL 345
EK + RE+EK+KLD+ L++ L ++ KEL
Sbjct: 370 EKITSLHREVEKVKLDQKRLDQELDFILSQQKEL 403
>gi|24497607 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 30.4 bits (67), Expect = 2.6
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 312 EKFAPIKREIEKLKLDKDHLEKVLQIGSAKAKEL 345
EK + RE+EK+KLD+ L++ L ++ KEL
Sbjct: 370 EKITSLHREVEKVKLDQKRLDQELDFILSQQKEL 403
>gi|24497605 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 30.4 bits (67), Expect = 2.6
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 312 EKFAPIKREIEKLKLDKDHLEKVLQIGSAKAKEL 345
EK + RE+EK+KLD+ L++ L ++ KEL
Sbjct: 370 EKITSLHREVEKVKLDQKRLDQELDFILSQQKEL 403
>gi|24497603 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 30.4 bits (67), Expect = 2.6
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 312 EKFAPIKREIEKLKLDKDHLEKVLQIGSAKAKEL 345
EK + RE+EK+KLD+ L++ L ++ KEL
Sbjct: 370 EKITSLHREVEKVKLDQKRLDQELDFILSQQKEL 403
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 30.4 bits (67), Expect = 2.6
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 10 RERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWVRLQDEYDSV 69
RE + + +GS + L K KR++ G QPT H N A + L + +
Sbjct: 132 RELYFYPGCCRRGSQRSIDLNKPIDKRIYKGTQPT--CHDFNQFTAATETISLLVGFSAG 189
Query: 70 LYSIVDLHSITVPQDPAVL--RQSILDMTAVLLACGINPEKSILFQQSQVSEHTQL 123
+DL + +D + L + ++D T V + PE LF S S H L
Sbjct: 190 QVQYLDL----IKKDTSKLFNEERLIDKTKVTYLKWL-PESESLFLASHASGHLYL 240
>gi|23397456 IQ motif containing K [Homo sapiens]
Length = 287
Score = 30.4 bits (67), Expect = 2.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 109 SILFQQSQVSEHTQLSWILSCMVRL-PRLQHLHQWKAKTTKQKH 151
S+L + + + + Q W +C+VR P +Q L QW+ K + KH
Sbjct: 210 SLLLTEEEAALYIQSFW-RACVVRCDPEIQELRQWQKKLREAKH 252
>gi|20149640 dual oxidase 1 precursor [Homo sapiens]
Length = 1551
Score = 29.3 bits (64), Expect = 5.7
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 224 SAKMSKSD------PDKLATVRITDSPEEIVQKFRKAVTDF 258
SA+ S+SD P +L TD P+EI ++F K VT F
Sbjct: 969 SARCSRSDIETELTPQRLQCPMDTDPPQEIRRRFGKKVTSF 1009
>gi|28872751 dual oxidase 1 precursor [Homo sapiens]
Length = 1551
Score = 29.3 bits (64), Expect = 5.7
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 224 SAKMSKSD------PDKLATVRITDSPEEIVQKFRKAVTDF 258
SA+ S+SD P +L TD P+EI ++F K VT F
Sbjct: 969 SARCSRSDIETELTPQRLQCPMDTDPPQEIRRRFGKKVTSF 1009
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 29.3 bits (64), Expect = 5.7
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 285 LSVEEVVRRSAGMNTARYKLAVADAVIEKFAPIKREIEKLKLDKDHLEKVLQIGSAKAKE 344
L +EE +RR+A +N + + A+ +FA E+E L HL K G+ A
Sbjct: 1793 LVIEEQLRRAAYLNMSEDPSHPSMALNTRFA----EVECLAESHQHLSKESMAGNKPANA 1848
Query: 345 LAYTVCQEVKKLV 357
+ + V +++++L+
Sbjct: 1849 VLHKVLKQLEELL 1861
>gi|13124883 HsKin17 protein [Homo sapiens]
Length = 393
Score = 29.3 bits (64), Expect = 5.7
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 303 KLAVADAVIEKFAPIKREIE---KLKLDKDHLEKVL 335
K A+ VI+K+ + + I+ KLKLD+ HLE V+
Sbjct: 301 KKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVI 336
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 28.9 bits (63), Expect = 7.5
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 285 LSVEEVVRRSAGMNTARYKLAVADAVIEKFAPIKREIEKLKLDKDHLEKVLQIGSAKAKE 344
L +EE +RR+A +N ++ A A+ +FA E E L HL K G+ A
Sbjct: 1804 LVIEEQLRRAAYLNLSQEPAHPAMALHARFA----EAECLAESHQHLSKESLAGNKPANA 1859
Query: 345 LAYTVCQEVKKLV 357
+ + V ++++L+
Sbjct: 1860 VLHKVLNQLEELL 1872
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 28.9 bits (63), Expect = 7.5
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 285 LSVEEVVRRSAGMNTARYKLAVADAVIEKFAPIKREIEKLKLDKDHLEKVLQIGSAKAKE 344
L +EE +RR+A +N ++ A A+ +FA E E L HL K G+ A
Sbjct: 1770 LVIEEQLRRAAYLNLSQEPAHPAMALHARFA----EAECLAESHQHLSKESLAGNKPANA 1825
Query: 345 LAYTVCQEVKKLV 357
+ + V ++++L+
Sbjct: 1826 VLHKVLNQLEELL 1838
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 28.9 bits (63), Expect = 7.5
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 285 LSVEEVVRRSAGMNTARYKLAVADAVIEKFAPIKREIEKLKLDKDHLEKVLQIGSAKAKE 344
L +EE +RR+A +N ++ A A+ +FA E E L HL K G+ A
Sbjct: 1863 LVIEEQLRRAAYLNLSQEPAHPAMALHARFA----EAECLAESHQHLSKESLAGNKPANA 1918
Query: 345 LAYTVCQEVKKLV 357
+ + V ++++L+
Sbjct: 1919 VLHKVLNQLEELL 1931
>gi|112293277 DnaJ (Hsp40) homolog, subfamily C, member 8 [Homo
sapiens]
Length = 253
Score = 28.9 bits (63), Expect = 7.5
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 208 ESILTSMKKVKSLRDPSAKMSKSDPDKLATVRITDSPEEIVQKFRKAVTDFTSEVTYDPA 267
+S+LTS +++ L P + +P ++ + + EEI ++FR+ + D A
Sbjct: 34 DSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDA 93
Query: 268 GRAGVSNIVAVHAAVTGLSVEEVVRRSAGMNTARYKLAVADAVIEKFAPIKREIEKLKLD 327
RA + AV A L +E +R+ + A K V V E+ +K+E + ++
Sbjct: 94 DRAQKA-FEAVDKAYKLLLDQEQKKRALDVIQAG-KEYVEHTVKERKKQLKKEGKPTIVE 151
Query: 328 KDHLE 332
+D E
Sbjct: 152 EDDPE 156
>gi|48762942 huntingtin interacting protein-1-related [Homo sapiens]
Length = 1068
Score = 28.5 bits (62), Expect = 9.8
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 273 SNIVAVHAAVTGLSVEEVVRRSAGMNTARYKLAVADAVIEKFAPIKREIE-KLKLDKDHL 331
S +V VHA + + + + + + V + + + +KRE E KL+ D L
Sbjct: 455 SELVHVHAELLRKNADTAKQLTVTQQSQEEVARVKEQLAFQVEQVKRESELKLEEKSDQL 514
Query: 332 EKVLQIGSAKAKELA 346
EK+ + AKA ELA
Sbjct: 515 EKLKRELEAKAGELA 529
>gi|239750456 PREDICTED: similar to KIAA0655 protein [Homo sapiens]
Length = 1048
Score = 28.5 bits (62), Expect = 9.8
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 273 SNIVAVHAAVTGLSVEEVVRRSAGMNTARYKLAVADAVIEKFAPIKREIE-KLKLDKDHL 331
S +V VHA + + + + + + V + + + +KRE E KL+ D L
Sbjct: 435 SELVHVHAELLRKNADTAKQLTVTQQSQEEVARVKEQLAFQVEQVKRESELKLEEKSDQL 494
Query: 332 EKVLQIGSAKAKELA 346
EK+ + AKA ELA
Sbjct: 495 EKLKRELEAKAGELA 509
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,659,358
Number of Sequences: 37866
Number of extensions: 528585
Number of successful extensions: 1572
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 25
length of query: 360
length of database: 18,247,518
effective HSP length: 103
effective length of query: 257
effective length of database: 14,347,320
effective search space: 3687261240
effective search space used: 3687261240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.