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Search of human proteins with 7706563
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
(207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 412 e-116
gi|16933567 mel transforming oncogene [Homo sapiens] 352 1e-97
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 278 3e-75
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 272 2e-73
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 266 9e-72
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 266 9e-72
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 266 9e-72
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 226 8e-60
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 222 2e-58
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 206 1e-53
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 205 3e-53
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 202 2e-52
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 199 1e-51
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 197 4e-51
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 196 9e-51
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 196 1e-50
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 194 3e-50
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 194 4e-50
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 184 4e-47
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 182 1e-46
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 182 1e-46
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa... 181 4e-46
gi|50234889 RAB43 protein [Homo sapiens] 181 4e-46
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 180 7e-46
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 180 9e-46
gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens] 175 2e-44
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 172 2e-43
gi|19923483 GTPase Rab14 [Homo sapiens] 170 9e-43
gi|39930371 RAB39, member RAS oncogene family [Homo sapiens] 169 2e-42
gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens] 169 2e-42
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 412 bits (1060), Expect = e-116
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
Query: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
Query: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDS 180
NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDS
Sbjct: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDS 180
Query: 181 NSAGAGGPVKITENRSKKTSFFRCSLL 207
NSAGAGGPVKITENRSKKTSFFRCSLL
Sbjct: 181 NSAGAGGPVKITENRSKKTSFFRCSLL 207
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 352 bits (904), Expect = 1e-97
Identities = 171/207 (82%), Positives = 193/207 (93%)
Query: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
MAKTYDYLFKLLLIGDSGVGKTC+LFRFSEDAFN+TFISTIGIDFKIRTIELDGK+IKLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI+NWIRNIEEHAS+DVE+MILG
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120
Query: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDS 180
NKCD+NDKRQVSKERGEKLA+DYGIKF+ETSAK++ NVE AFFTLARDI K+++K+ +
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGN 180
Query: 181 NSAGAGGPVKITENRSKKTSFFRCSLL 207
+ G+ VKIT ++ K++SFFRC LL
Sbjct: 181 SPQGSNQGVKITPDQQKRSSFFRCVLL 207
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 278 bits (710), Expect = 3e-75
Identities = 136/195 (69%), Positives = 162/195 (83%)
Query: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
KTYD LFKLLLIGDSGVGKTC+LFRFS+DAFNTTFISTIGIDFKI+T+EL GKKIKLQIW
Sbjct: 4 KTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIW 63
Query: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
DTAGQERF TITT+YYRGAMGIMLVYDITN KSF+NI W+RNI+EHA+ DVERM+LGNK
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNK 123
Query: 123 CDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNS 182
CDM+DKR V K +G ++A ++GI+F ETSAK++ N+E+AF TLA DI+ K K +S +
Sbjct: 124 CDMDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
Query: 183 AGAGGPVKITENRSK 197
+T +SK
Sbjct: 184 VDISSGGGVTGWKSK 198
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 272 bits (695), Expect = 2e-73
Identities = 131/206 (63%), Positives = 171/206 (83%), Gaps = 4/206 (1%)
Query: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
MAK YD+LFKLLLIGDSGVGKTCL+ RF+ED FN T+ISTIGIDFKIRT++++GKKIKLQ
Sbjct: 1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQ 60
Query: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
+WDTAGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+E+AS+ VER++LG
Sbjct: 61 VWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLG 120
Query: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDS 180
NKCDM KR+V KE+ +KLA ++GI+F ETSAKSS NV+EAF +LARDI+ K + + +
Sbjct: 121 NKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGN 180
Query: 181 NSAGAGGPVKITENRSKKTSFFRCSL 206
+ +K + ++ +CSL
Sbjct: 181 GNKPPSTDLKTCDKKNTN----KCSL 202
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 266 bits (680), Expect = 9e-72
Identities = 129/206 (62%), Positives = 168/206 (81%), Gaps = 4/206 (1%)
Query: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
MAK YD+LFKLLLIGDSGVGKTCL+ RF+ED FN T+ISTIGIDFKIRT++++GKKIKLQ
Sbjct: 125 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQ 184
Query: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
+WDTAGQERF+TITTAYYRGAMGI+L YDIT+EKSF+NI+NW+++I E+AS+ VE ++LG
Sbjct: 185 VWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLG 244
Query: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDS 180
NKCDM KR+V KE+ +KLA ++GI+F ETSAKSS NV+EAF +LARDI+ K + + +
Sbjct: 245 NKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGN 304
Query: 181 NSAGAGGPVKITENRSKKTSFFRCSL 206
+ +K + ++ +CSL
Sbjct: 305 GNKPPSTDLKTCDIKNTN----KCSL 326
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 266 bits (680), Expect = 9e-72
Identities = 129/206 (62%), Positives = 168/206 (81%), Gaps = 4/206 (1%)
Query: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
MAK YD+LFKLLLIGDSGVGKTCL+ RF+ED FN T+ISTIGIDFKIRT++++GKKIKLQ
Sbjct: 125 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQ 184
Query: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
+WDTAGQERF+TITTAYYRGAMGI+L YDIT+EKSF+NI+NW+++I E+AS+ VE ++LG
Sbjct: 185 VWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLG 244
Query: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDS 180
NKCDM KR+V KE+ +KLA ++GI+F ETSAKSS NV+EAF +LARDI+ K + + +
Sbjct: 245 NKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGN 304
Query: 181 NSAGAGGPVKITENRSKKTSFFRCSL 206
+ +K + ++ +CSL
Sbjct: 305 GNKPPSTDLKTCDIKNTN----KCSL 326
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 266 bits (680), Expect = 9e-72
Identities = 129/206 (62%), Positives = 168/206 (81%), Gaps = 4/206 (1%)
Query: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
MAK YD+LFKLLLIGDSGVGKTCL+ RF+ED FN T+ISTIGIDFKIRT++++GKKIKLQ
Sbjct: 125 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQ 184
Query: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
+WDTAGQERF+TITTAYYRGAMGI+L YDIT+EKSF+NI+NW+++I E+AS+ VE ++LG
Sbjct: 185 VWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLG 244
Query: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDS 180
NKCDM KR+V KE+ +KLA ++GI+F ETSAKSS NV+EAF +LARDI+ K + + +
Sbjct: 245 NKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGN 304
Query: 181 NSAGAGGPVKITENRSKKTSFFRCSL 206
+ +K + ++ +CSL
Sbjct: 305 GNKPPSTDLKTCDIKNTN----KCSL 326
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 226 bits (577), Expect = 8e-60
Identities = 108/190 (56%), Positives = 146/190 (76%), Gaps = 6/190 (3%)
Query: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
M YDYLFKLLLIGDSGVGK+CLL RF++D + ++ISTIG+DFKIRTIELDGK IKLQ
Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
Query: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
IWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ +AS +V ++++G
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDS 180
NKCD+ K+ V ++ A GI FLETSAK++ NVE++F T+A +I ++
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM------G 177
Query: 181 NSAGAGGPVK 190
A AGG K
Sbjct: 178 PGATAGGAEK 187
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 222 bits (565), Expect = 2e-58
Identities = 102/173 (58%), Positives = 139/173 (80%)
Query: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
M YDYLFKLLLIGDSGVGK+CLL RF++D + ++ISTIG+DFKIRTIELDGK IKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
IWDTAGQERFRTIT++YYRGA GI++VYD+T+++S+ N+K W++ I+ +AS +V ++++G
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKL 173
NK D+ K+ V ++ A GI FLETSAK++ NVE+AF T+A +I ++
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 173
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 206 bits (523), Expect = 1e-53
Identities = 94/185 (50%), Positives = 136/185 (73%)
Query: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
+ +DY+FKLLLIG+S VGKT LFR+++D+F F+ST+GIDFK++T+ K+IKLQIW
Sbjct: 17 QNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76
Query: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
DTAGQER+RTITTAYYRGAMG +L+YDI N++SF +++W I+ ++ + + +++GNK
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK 136
Query: 123 CDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNS 182
CD+ D+R V E G +LA D G +F E SAK + NV++ F L I K+N + S+S
Sbjct: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSS 196
Query: 183 AGAGG 187
+G+ G
Sbjct: 197 SGSNG 201
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 205 bits (521), Expect = 3e-53
Identities = 94/184 (51%), Positives = 138/184 (75%)
Query: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
+ +DY+FK+L+IG+S VGKT LFR+++D+F F+ST+GIDFK++TI + K+IKLQIW
Sbjct: 17 QNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIW 76
Query: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
DTAGQER+RTITTAYYRGAMG +L+YDITNE+SF+ +++W I+ ++ + + +++GNK
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK 136
Query: 123 CDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNS 182
CDM D+R VS ERG +LA G +F E SAK + NV++ F L I K++ ++ ++
Sbjct: 137 CDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADP 196
Query: 183 AGAG 186
A G
Sbjct: 197 AVTG 200
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 202 bits (513), Expect = 2e-52
Identities = 91/175 (52%), Positives = 134/175 (76%)
Query: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
+ +DY+FKLL+IG+S VGKT LFR+++D+F + F+ST+GIDFK++T+ + K+IKLQIW
Sbjct: 25 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIW 84
Query: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
DTAGQER+RTITTAYYRGAMG +L+YDITNE+SF+ +++W I+ ++ + + +++GNK
Sbjct: 85 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNK 144
Query: 123 CDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKM 177
CDM D+R +S ERG+ L G +F ETSAK + NV++ F L I K++ +
Sbjct: 145 CDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 199 bits (507), Expect = 1e-51
Identities = 94/166 (56%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
Query: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNT-TFISTIGIDFKIRTIELDGKKIKLQIWD 63
YD FK++L+GDSGVGKTCLL RF + AF TFIST+GIDF+ + +++DG K+KLQ+WD
Sbjct: 60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 119
Query: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKC 123
TAGQERFR++T AYYR A ++L+YD+TN+ SFDNI+ W+ I E+A DV M+LGNK
Sbjct: 120 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 179
Query: 124 DMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDI 169
D +R V +E GEKLA +YG+ F+ETSAK+ NV+ AF +A+++
Sbjct: 180 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 225
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 197 bits (502), Expect = 4e-51
Identities = 93/197 (47%), Positives = 140/197 (71%), Gaps = 2/197 (1%)
Query: 4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWD 63
TY YLFK ++IGD+GVGK+CLL +F++ F TIG++F R + +DGK+IKLQIWD
Sbjct: 2 TYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWD 61
Query: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKC 123
TAGQE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +H+SS++ M++GNK
Sbjct: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 121
Query: 124 DMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSA 183
D+ +R V +E GE A ++G+ F+ETSAK++ NVEEAF A++I K+ + + D ++
Sbjct: 122 DLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNE 181
Query: 184 GAGGPVKITENRSKKTS 200
G +KI +S TS
Sbjct: 182 ANG--IKIGPQQSISTS 196
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 196 bits (499), Expect = 9e-51
Identities = 95/198 (47%), Positives = 138/198 (69%), Gaps = 1/198 (0%)
Query: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
MA+ YD+LFKLL+IGDSGVGK+ LL RF+++ F+ ++I+TIG+DFKIRT+E++G+K+KLQ
Sbjct: 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 60
Query: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
IWDTAGQERFRTIT+ YYRG G+++VYD+T+ +SF N+K W+ I ++ DV R+++G
Sbjct: 61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVG 119
Query: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDS 180
NK D +++ V E K A GI+ ETSAK + NVEE F + ++ +
Sbjct: 120 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 179
Query: 181 NSAGAGGPVKITENRSKK 198
VK+T+N +K
Sbjct: 180 QQQQQNDVVKLTKNSKRK 197
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 196 bits (498), Expect = 1e-50
Identities = 91/177 (51%), Positives = 131/177 (74%), Gaps = 1/177 (0%)
Query: 4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAF-NTTFISTIGIDFKIRTIELDGKKIKLQIW 62
+YD K++L+GD+GVGKTC L +F + AF + TFI+T+GIDF+ + + +DG ++KLQIW
Sbjct: 25 SYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIW 84
Query: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
DTAGQERFR++T AYYR A ++L+YDITN+ SFDNI+ W+ I E+A DV M+LGNK
Sbjct: 85 DTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNK 144
Query: 123 CDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMND 179
DM+ +R + E GE LA +YG+ FLETSAK+ NVE AF +A+++ + + ++
Sbjct: 145 ADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQADE 201
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 194 bits (494), Expect = 3e-50
Identities = 90/192 (46%), Positives = 138/192 (71%), Gaps = 1/192 (0%)
Query: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
+ +DY+FKLL+IG+S VGKT LFR+++D F F+ST+GIDFK++T+ K++KLQIW
Sbjct: 17 QNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 76
Query: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
DTAGQER+RTITTAYYRGAMG +L+YDITNE+SF+ +++W I+ ++ + + +++GNK
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNK 136
Query: 123 CDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMN-DSN 181
CDM ++R V E+G+ LA G F E SAK + +V +AF L I K++ ++ D +
Sbjct: 137 CDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPS 196
Query: 182 SAGAGGPVKITE 193
G+ ++++
Sbjct: 197 MLGSSKNTRLSD 208
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 194 bits (493), Expect = 4e-50
Identities = 89/182 (48%), Positives = 131/182 (71%)
Query: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
Y YLFK ++IGD+GVGK+CLL +F++ F TIG++F R I +DGK+IKLQIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Query: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
AGQE FR+IT +YYRGA G +LVYDIT +F+++ W+ + +H++S++ M++GNK D
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
Query: 125 MNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAG 184
+ +R+V KE GE A ++G+ F+ETSAK+++NVEEAF A++I K+ + D N+
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182
Query: 185 AG 186
G
Sbjct: 183 NG 184
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 184 bits (468), Expect = 4e-47
Identities = 93/202 (46%), Positives = 134/202 (66%), Gaps = 9/202 (4%)
Query: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
YDYLFK++LIGDSGVGK+ LL RF+ + FN STIG++F R+I++DGK IK QIWDT
Sbjct: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
Query: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
AGQER+R IT+AYYRGA+G +LVYDI +++N++ W++ + +HA S++ M++GNK D
Sbjct: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
Query: 125 MNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKM------N 178
+ R V + A G+ F+ETSA S NVE AF T+ +I +++K N
Sbjct: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRREN 187
Query: 179 DSNSAGAGGPVKI---TENRSK 197
D + + P+ + TEN+ K
Sbjct: 188 DMSPSNNVVPIHVPPTTENKPK 209
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 182 bits (463), Expect = 1e-46
Identities = 87/202 (43%), Positives = 136/202 (67%), Gaps = 5/202 (2%)
Query: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
+ +DYLFK++LIGDS VGKTC++ F + T +TIG+DF +R++++DGKK+K+Q+W
Sbjct: 12 ENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVW 71
Query: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
DTAGQERFRTIT +YYR A ++ YD+T +F++I +WI IE++ +++V M++GNK
Sbjct: 72 DTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNK 131
Query: 123 CDMNDKRQVSKERGEKLAIDYG-IKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSN 181
CD+ +KR V E LA YG + LETSAK S N+EE F +A++++ + + + +
Sbjct: 132 CDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIARNSLHLYGES 191
Query: 182 SAGA----GGPVKITENRSKKT 199
+ PV + + S+KT
Sbjct: 192 ALNGLPLDSSPVLMAQGPSEKT 213
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 182 bits (463), Expect = 1e-46
Identities = 85/169 (50%), Positives = 126/169 (74%), Gaps = 1/169 (0%)
Query: 6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTA 65
D+ ++++IG GVGKT L+ RF++D F ST+G+DFKI+T+EL GKKI+LQIWDTA
Sbjct: 40 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
Query: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDM 125
GQERF +IT+AYYR A GI+LVYDIT +++FD++ W++ I+++AS D E +++GNK D
Sbjct: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
Query: 126 NDKRQVSKERGEKLAIDY-GIKFLETSAKSSANVEEAFFTLARDIMTKL 173
R++++++GEK A G++F E SAK + NV+E F L DI+ K+
Sbjct: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 208
>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
sapiens]
Length = 216
Score = 181 bits (459), Expect = 4e-46
Identities = 87/173 (50%), Positives = 123/173 (71%), Gaps = 1/173 (0%)
Query: 8 LFKLLLIGDSGVGKTCLLFRFSEDAFNT-TFISTIGIDFKIRTIELDGKKIKLQIWDTAG 66
L K +L+GDSGVGKT LL +F + F +F +T+GI F + + +DG ++KLQIWDTAG
Sbjct: 22 LHKTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKVVTVDGVRVKLQIWDTAG 81
Query: 67 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMN 126
QERFR++T AYYR A ++L+YDITN+ SFDNI+ W+ I E+A DV M+LGNK DM+
Sbjct: 82 QERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMS 141
Query: 127 DKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMND 179
+R + E GE LA +YG+ FLETSAK+ NVE AF +A+++ + + ++
Sbjct: 142 SERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQADE 194
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 181 bits (459), Expect = 4e-46
Identities = 85/169 (50%), Positives = 126/169 (74%), Gaps = 1/169 (0%)
Query: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
YD+LFKL+L+GD+ VGKTC++ RF AF+ STIG+DF ++T+E+ GK++KLQIWDT
Sbjct: 15 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 74
Query: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
AGQERFRTIT +YYR A G +L YDIT SF ++ +WI ++ ++A S++ ++++GNK D
Sbjct: 75 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 134
Query: 125 MNDKRQVSKERGEKLAIDYGIK-FLETSAKSSANVEEAFFTLARDIMTK 172
+++ R+VS + LA Y I +ETSAK S+NVEEAF +A +++ +
Sbjct: 135 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 183
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 180 bits (457), Expect = 7e-46
Identities = 87/184 (47%), Positives = 124/184 (67%)
Query: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
YDYLFK++LIGDSGVGK+ LL RF+ + FN STIG++F R+I++DGK IK QIWDT
Sbjct: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
Query: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
AGQER+R IT+AYYRGA+G +LVYDI +++N++ W++ + +HA S++ M++GNK D
Sbjct: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
Query: 125 MNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAG 184
+ R V + A + F+ETSA S NVEEAF + +I +++K +A
Sbjct: 128 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 187
Query: 185 AGGP 188
P
Sbjct: 188 DESP 191
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 180 bits (456), Expect = 9e-46
Identities = 85/162 (52%), Positives = 125/162 (77%)
Query: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
YD+LFK++LIG++GVGKTCL+ RF++ F +TIG+DF I+T+E++G+K+KLQIWDT
Sbjct: 6 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 65
Query: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
AGQERFR+IT +YYR A ++L YDIT E+SF + W+R IE++AS+ V +++GNK D
Sbjct: 66 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 125
Query: 125 MNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLA 166
+ ++R+VS++R E+ + + +LETSAK S NVE+ F LA
Sbjct: 126 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 167
>gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]
Length = 213
Score = 175 bits (444), Expect = 2e-44
Identities = 84/171 (49%), Positives = 123/171 (71%), Gaps = 2/171 (1%)
Query: 7 YLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELD-GKKIKLQIWDTA 65
Y F+L++IGDS VGK+CL+ RF+E F T+G+DF R +E++ GK+IKLQIWDTA
Sbjct: 7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTA 66
Query: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASS-DVERMILGNKCD 124
GQERFR+IT AYYR ++G +L++DITN +SF N+ W+ + H + +++G+KCD
Sbjct: 67 GQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCD 126
Query: 125 MNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNR 175
++ +RQV++ EKLA YG+K++ETSA+ + NVE+AF L RDI + R
Sbjct: 127 LDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKR 177
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 172 bits (435), Expect = 2e-43
Identities = 83/186 (44%), Positives = 125/186 (67%)
Query: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
MA+TYD+LFK L+IG +G GK+CLL +F E+ F TIG++F R + + GK +KLQ
Sbjct: 1 MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQ 60
Query: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
IWDTAGQERFR++T +YYRGA G +LVYDIT+ ++++++ W+ + AS ++ ++ G
Sbjct: 61 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 120
Query: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDS 180
NK D++ +R+V+ + A + + FLETSA + NVEEAF AR I+ K++ D
Sbjct: 121 NKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDP 180
Query: 181 NSAGAG 186
G+G
Sbjct: 181 ERMGSG 186
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 170 bits (430), Expect = 9e-43
Identities = 80/182 (43%), Positives = 120/182 (65%)
Query: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
Y Y+FK ++IGD GVGK+CLL +F+E F TIG++F R IE+ G+KIKLQIWDT
Sbjct: 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 67
Query: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
AGQERFR +T +YYRGA G ++VYDIT +++++ +W+ + + + +++GNK D
Sbjct: 68 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 127
Query: 125 MNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAG 184
+ +R V+ E ++ A + G+ FLE SAK+ NVE+AF A+ I + D N+A
Sbjct: 128 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAE 187
Query: 185 AG 186
+G
Sbjct: 188 SG 189
>gi|39930371 RAB39, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 169 bits (428), Expect = 2e-42
Identities = 83/175 (47%), Positives = 126/175 (72%), Gaps = 6/175 (3%)
Query: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAF----NTTFISTIGIDFKIRTIELD-GK 55
M + Y F+L++IGDS VGK+CLL RF++ F + T+G+DF R +E++ GK
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK 60
Query: 56 KIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASS-DV 114
+IKLQ+WDTAGQERFR+IT +YYR ++G LV+DITN +SF+++K+W+ + + +
Sbjct: 61 RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI 120
Query: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDI 169
+++G+KCD+ +RQV++E EKL+ D G+K++ETSAK + NVEE+F L RDI
Sbjct: 121 VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDI 175
>gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 169 bits (427), Expect = 2e-42
Identities = 83/186 (44%), Positives = 123/186 (66%)
Query: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
M++TYD+LFK L+IG++G GK+CLL +F E F TIG++F + I + GK +KLQ
Sbjct: 6 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 65
Query: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
IWDTAGQERFR++T +YYRGA G +LVYDIT+ ++++ + NW+ + AS ++ ++ G
Sbjct: 66 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 125
Query: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDS 180
NK D++ R+V+ + A + + FLETSA + NVEEAF AR I+ K+ D
Sbjct: 126 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDP 185
Query: 181 NSAGAG 186
G+G
Sbjct: 186 ERMGSG 191
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,410,923
Number of Sequences: 37866
Number of extensions: 221105
Number of successful extensions: 1098
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 277
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.