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Search of human proteins with 7705851
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705851 coiled-coil-helix-coiled-coil-helix domain
containing 2 [Homo sapiens]
(151 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705851 coiled-coil-helix-coiled-coil-helix domain containing... 307 3e-84
gi|239752710 PREDICTED: similar to coiled-coil-helix-coiled-coil... 288 9e-79
gi|239747238 PREDICTED: similar to coiled-coil-helix-coiled-coil... 288 9e-79
gi|239741059 PREDICTED: similar to coiled-coil-helix-coiled-coil... 288 9e-79
gi|47497976 coiled-coil-helix-coiled-coil-helix domain containin... 153 6e-38
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 47 8e-06
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 43 1e-04
gi|50428940 mediator complex subunit 25 [Homo sapiens] 42 3e-04
gi|31377750 YTH domain family, member 1 [Homo sapiens] 40 6e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 8e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 40 8e-04
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 40 0.001
gi|4758392 forkhead box D1 [Homo sapiens] 40 0.001
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 39 0.002
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 38 0.003
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 38 0.004
gi|39930315 neurexophilin 4 [Homo sapiens] 37 0.005
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 37 0.006
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 37 0.006
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 37 0.006
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 37 0.006
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 37 0.008
gi|239753493 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo ... 37 0.008
gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo ... 37 0.008
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 37 0.008
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 37 0.008
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 37 0.008
gi|7705881 zinc finger protein 580 [Homo sapiens] 37 0.008
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 37 0.008
>gi|7705851 coiled-coil-helix-coiled-coil-helix domain containing 2
[Homo sapiens]
Length = 151
Score = 307 bits (786), Expect = 3e-84
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA 60
MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA
Sbjct: 1 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA 60
Query: 61 TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQ 120
TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQ
Sbjct: 61 TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQ 120
Query: 121 FLECAQNQGDIKLCEGFNEVLKQCRLANGLA 151
FLECAQNQGDIKLCEGFNEVLKQCRLANGLA
Sbjct: 121 FLECAQNQGDIKLCEGFNEVLKQCRLANGLA 151
>gi|239752710 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
[Homo sapiens]
Length = 184
Score = 288 bits (738), Expect = 9e-79
Identities = 142/148 (95%), Positives = 143/148 (96%)
Query: 4 GSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTA 63
GSRS TSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPS VGSSAAAPRQPGLMAQMATTA
Sbjct: 37 GSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTA 96
Query: 64 AGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQFLE 123
AGVAVGSAVGH LGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPC EIKQFLE
Sbjct: 97 AGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLE 156
Query: 124 CAQNQGDIKLCEGFNEVLKQCRLANGLA 151
CA+NQGDIKLCEGFNEVLKQCRLANGLA
Sbjct: 157 CAENQGDIKLCEGFNEVLKQCRLANGLA 184
>gi|239747238 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
isoform 3 [Homo sapiens]
Length = 184
Score = 288 bits (738), Expect = 9e-79
Identities = 142/148 (95%), Positives = 143/148 (96%)
Query: 4 GSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTA 63
GSRS TSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPS VGSSAAAPRQPGLMAQMATTA
Sbjct: 37 GSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTA 96
Query: 64 AGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQFLE 123
AGVAVGSAVGH LGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPC EIKQFLE
Sbjct: 97 AGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLE 156
Query: 124 CAQNQGDIKLCEGFNEVLKQCRLANGLA 151
CA+NQGDIKLCEGFNEVLKQCRLANGLA
Sbjct: 157 CAENQGDIKLCEGFNEVLKQCRLANGLA 184
>gi|239741059 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
isoform 3 [Homo sapiens]
Length = 184
Score = 288 bits (738), Expect = 9e-79
Identities = 142/148 (95%), Positives = 143/148 (96%)
Query: 4 GSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTA 63
GSRS TSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPS VGSSAAAPRQPGLMAQMATTA
Sbjct: 37 GSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTA 96
Query: 64 AGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQFLE 123
AGVAVGSAVGH LGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPC EIKQFLE
Sbjct: 97 AGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLE 156
Query: 124 CAQNQGDIKLCEGFNEVLKQCRLANGLA 151
CA+NQGDIKLCEGFNEVLKQCRLANGLA
Sbjct: 157 CAENQGDIKLCEGFNEVLKQCRLANGLA 184
>gi|47497976 coiled-coil-helix-coiled-coil-helix domain containing
10 [Homo sapiens]
Length = 142
Score = 153 bits (386), Expect = 6e-38
Identities = 83/151 (54%), Positives = 98/151 (64%), Gaps = 12/151 (7%)
Query: 1 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA 60
MPRGSRS SR PASR AP A PPA PPSA + A QPGLMAQMA
Sbjct: 1 MPRGSRSAASR---PASRPA--------APSAHPPAHPPPSAAAPAPAPSGQPGLMAQMA 49
Query: 61 TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQ 120
TTAAGVAVGSAVGH +G A+TG FSGGS +EP++P + Q PC YEI+Q
Sbjct: 50 TTAAGVAVGSAVGHVMGSALTGAFSGGS-SEPSQPAVQQAPTPAAPQPLQMGPCAYEIRQ 108
Query: 121 FLECAQNQGDIKLCEGFNEVLKQCRLANGLA 151
FL+C+ Q D+ LCEGF+E LKQC+ +GL+
Sbjct: 109 FLDCSTTQSDLSLCEGFSEALKQCKYYHGLS 139
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 46.6 bits (109), Expect = 8e-06
Identities = 40/117 (34%), Positives = 47/117 (40%), Gaps = 10/117 (8%)
Query: 2 PRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAA-----PRQPGLM 56
PRG+ + + APP + AP P PAPVA A P A ++A A P QPG
Sbjct: 115 PRGAPAAAAAAAPPPTPAPP----PPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPR 170
Query: 57 AQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQP 113
AQ A A A + G A AR PQ P QQQQP
Sbjct: 171 AQRAAPLAAPPPAPAAPPAVAPP-AGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQP 226
Score = 30.0 bits (66), Expect = 0.78
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 2 PRGSRSRTSRMAPPASRAPQM-------RAAPRPAPVAQ----PPAAAPPSAVGSSAAAP 50
PR R+ PPA AP R AP PA A+ PP PP+ P
Sbjct: 169 PRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPP 228
Query: 51 RQPGLMAQMATTAAGVA 67
QP + AG A
Sbjct: 229 PQPQPPPEGGAVRAGGA 245
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 42.7 bits (99), Expect = 1e-04
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 12 MAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGVAVGSA 71
MA P S+AP A +P P+ P A P+ S A+AP A AA A +
Sbjct: 1 MAEP-SQAPTPAPAAQPRPLQSPAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTG 59
Query: 72 VGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQ 109
G G + G GS +PARP ++ Q+ + AQ
Sbjct: 60 TG---GPGVGSG-GAGSGGDPARPGLSQQQRASQRKAQ 93
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 41.6 bits (96), Expect = 3e-04
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 12 MAPPASRAPQMRAAPRPAPVAQPPAAAPPSAV-----GSSAAAPRQPGLMAQMATTAAGV 66
+ PP S+AP + P P +PP A+ PS V GS A QPG + T A G
Sbjct: 316 VGPPFSQAPAPQLPPGPPGAPKPPPASQPSLVSTVAPGSGLAPTAQPGAPSMAGTVAPGG 375
Query: 67 AVGSAVGHTLGHAITGGFSGGSN 89
G + LG GG SN
Sbjct: 376 VSGPSPAQ-LGAPALGGQQSVSN 397
Score = 26.9 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 26 PRPAPVAQPPAAAPPSAVGSSAAAPRQPG 54
P+P AQPP AP G +A+ P PG
Sbjct: 605 PQPQGTAQPPPGAPQGPPG-AASGPPPPG 632
>gi|31377750 YTH domain family, member 1 [Homo sapiens]
Length = 559
Score = 40.4 bits (93), Expect = 6e-04
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 13 APPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGVAVGSAV 72
AP +AP +AAP+P VAQP A PP+ +P+QP +A A G +
Sbjct: 283 APVPQQAPSPQAAPQPQQVAQPLPAQPPALAQPQYQSPQQPPQTRWVAPRNRNAAFGQSG 342
Query: 73 G 73
G
Sbjct: 343 G 343
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 40.0 bits (92), Expect = 8e-04
Identities = 36/112 (32%), Positives = 42/112 (37%), Gaps = 14/112 (12%)
Query: 13 APPASRAPQMRAAPRP-APVAQPPAAAPPSA---------VGSSAAAPRQPGLMAQMATT 62
APPA AP AAP P AP A PP P A G AAP P A
Sbjct: 248 APPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGG 307
Query: 63 AAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEP----QGTQPAQQ 110
+AG A A ++G G+ A P + + P Q PA Q
Sbjct: 308 SAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQ 359
Score = 33.9 bits (76), Expect = 0.054
Identities = 30/94 (31%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 1 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQP----PAAAPPSAVGSSAAAPRQPGLM 56
+P+ + T PP A A P+P A P PAAAPP + A R PG
Sbjct: 228 LPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHP 287
Query: 57 AQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNA 90
A T A V +A A GG +G + A
Sbjct: 288 AGPPTAAPAVPPPAA-------AQNGGSAGAAPA 314
Score = 29.6 bits (65), Expect = 1.0
Identities = 19/70 (27%), Positives = 27/70 (38%)
Query: 7 SRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGV 66
++T + PAS A M P PAA PP A G+ P+ + +
Sbjct: 358 AQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPT 417
Query: 67 AVGSAVGHTL 76
A S + TL
Sbjct: 418 ATTSGIRATL 427
Score = 29.3 bits (64), Expect = 1.3
Identities = 28/91 (30%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 11 RMAPPASRAPQMRAAP-------RPAPVAQPPAAAPPSAVGSSAA----APRQPGLMAQM 59
R PP+ R P + A P RP P + AP A + AA AP P A
Sbjct: 104 RPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGP 163
Query: 60 ATTAAGVAVGSAVGHTLGHAITGGFSGGSNA 90
A AA G G G G G A
Sbjct: 164 AALAARAGPGPGPGPGPGPGPGPGKPAGPGA 194
Score = 29.3 bits (64), Expect = 1.3
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 10 SRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATT 62
++M A PQ APRPA P +APP + S+ AP P + Q+ T
Sbjct: 474 AQMQAQAHAQPQTTMAPRPA----TPTSAPPVQI-STVQAPGTPIIARQVTPT 521
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 40.0 bits (92), Expect = 8e-04
Identities = 34/103 (33%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 14 PPASRAPQMRAAPRPAP----VAQPPAAAPPSAVGSSAAAPRQPGLMAQMATT----AAG 65
PPA P + +P P + PPAA PPS GS AA P G A T G
Sbjct: 1011 PPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGG 1070
Query: 66 VAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPA 108
A S G A T G A P+ P P T P+
Sbjct: 1071 PATPSLKGAPTPPAATPPSPKGGPATPS-PKGAPMPPAATPPS 1112
Score = 37.0 bits (84), Expect = 0.006
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 14 PPASRAPQMR---AAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATT 62
PPA+ P + A P P PPA PPS GS AA P G A T
Sbjct: 988 PPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAAT 1039
Score = 35.0 bits (79), Expect = 0.024
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 12/113 (10%)
Query: 2 PRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMAT 61
P+G+ + T PP+ + P+ AP PPAA PPS G A P + + T
Sbjct: 1237 PKGAPT-TPAATPPSPKGGPATPPPKGAPT--PPAATPPSLKGGLATPPHKGAPNPAVVT 1293
Query: 62 TAA---GVAVGSAVGHTLGHAITGGFSGGS------NAEPARPDITYQEPQGT 105
+ G A G A T GS P P +T P+GT
Sbjct: 1294 PPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGT 1346
Score = 34.7 bits (78), Expect = 0.032
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 14 PPASRAPQMR---AAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAA---GVA 67
PPA+ P + A P P PPAA PPS G A P + AT + G+A
Sbjct: 1082 PPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLA 1141
Query: 68 VGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPA 108
G A T G A P P P T P+
Sbjct: 1142 TPPPKGAPTTPAATPPSPKGGLATPP-PKGAPTTPAATPPS 1181
Score = 33.9 bits (76), Expect = 0.054
Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 14/119 (11%)
Query: 2 PRGSRSRTSRMAPPASRAPQ-MRAAPRPAPVAQPPAAAPPSAVGSSAA-----APRQPGL 55
P S + +S A+ AP+ + A+P P PPAA PPS G A AP P
Sbjct: 909 PALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPA- 967
Query: 56 MAQMATTAAGVAVGSAVGHTLGHAIT------GGFSGGSNAEPARPDITYQEPQGTQPA 108
A + G A S G A T G + P P +T P+G+ A
Sbjct: 968 -ATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAA 1025
Score = 32.7 bits (73), Expect = 0.12
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 3 RGSRSRTSRMAPPASRAPQMRAAPRPAPVAQP---PAAAPPSAVGSSAAAPRQPGLMAQM 59
+G+ S + PPA +P + AP P V P A P+ G+ + P P +
Sbjct: 1591 KGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDS 1650
Query: 60 ATTAAGVAVGSAVGHTLGHAITG 82
T+ A V +G T+ A G
Sbjct: 1651 PTSPASVT--CKMGATVPQASKG 1671
Score = 30.4 bits (67), Expect = 0.60
Identities = 36/116 (31%), Positives = 43/116 (37%), Gaps = 19/116 (16%)
Query: 14 PPASRAPQMRAAPRPAP---VAQP--------PAAAPPSAVG-----SSAAAPRQPGLMA 57
PP AP AA P+P +A P PAA PPS G S AP P A
Sbjct: 1143 PPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPA--A 1200
Query: 58 QMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQP 113
+ G+A S G A T G A P+ P P T P+ + P
Sbjct: 1201 TPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPS-PKGAPTTPAATPPSPKGGP 1255
Score = 28.9 bits (63), Expect = 1.7
Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 21/122 (17%)
Query: 2 PRGSRSRT----SRMAPPASRAPQMRAAPRPAPVAQ----PPAAAPPSAVGSSA-----A 48
P+GS + T PPA+ P + +P P+ + PAA PS G A
Sbjct: 1019 PKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKG 1078
Query: 49 APRQPGLMAQMATTAAGVAVGSAVGHTLGHAIT-----GGFSGGSN-AEPARPDITYQEP 102
AP P A + G A S G + A T GG + + P P T P
Sbjct: 1079 APTPPA--ATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSP 1136
Query: 103 QG 104
+G
Sbjct: 1137 KG 1138
Score = 28.9 bits (63), Expect = 1.7
Identities = 35/111 (31%), Positives = 40/111 (36%), Gaps = 19/111 (17%)
Query: 14 PPASRAPQMRAAPRPAP---VAQP--------PAAAPPSAVG-----SSAAAPRQPGLMA 57
PP AP AA P+P +A P PAA PPS G S AP P A
Sbjct: 1166 PPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPA--A 1223
Query: 58 QMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPA 108
+ G+A S G A T G A P P P T P+
Sbjct: 1224 TPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPP-PKGAPTPPAATPPS 1273
Score = 28.5 bits (62), Expect = 2.3
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 14 PPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGVAVGSAVG 73
PPA+ P +P+ +P PP AP + + P L A ++ G S+
Sbjct: 1312 PPAATPP----SPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKE 1367
Query: 74 HTLGHAITGGFSGGSNAEPARP 95
A T GG P P
Sbjct: 1368 GPTPPAATPSHKGGPAMTPPSP 1389
Score = 28.1 bits (61), Expect = 3.0
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 1 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAP 50
+P+ S+ ++ P A + + AP P+ P P SSA +P
Sbjct: 1665 VPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSP 1714
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 39.7 bits (91), Expect = 0.001
Identities = 33/87 (37%), Positives = 39/87 (44%), Gaps = 19/87 (21%)
Query: 13 APPASRAPQMRAAPR------PAPVAQP-PAAAP-----PSAVGSSAAAPRQPGLMAQMA 60
APPA+ P AAP PAP A P PAAAP P+A ++ AAP Q AQ
Sbjct: 10 APPATPTPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPGQTPASAQAP 69
Query: 61 TTAAGVAVGSAVGHTLGHAITGGFSGG 87
A+ G A+ G F GG
Sbjct: 70 AQTPAPALP-------GPALPGPFPGG 89
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 39.7 bits (91), Expect = 0.001
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 4 GSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPA-------AAPPSAVGSSAAAPRQPGLM 56
GS + A A A +A+P P+PVA PPA A +AVG +AA R L+
Sbjct: 370 GSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAVGPAAALTR--SLV 427
Query: 57 AQMATTAAGVAVGSAVG 73
A A A+ V+ +A+G
Sbjct: 428 AAAAAAASSVSSSAALG 444
Score = 29.3 bits (64), Expect = 1.3
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 32/95 (33%)
Query: 15 PASRAPQMRAAPRPAPVA------------QPPAAAPPSAVGSSAAA--------PRQP- 53
PA+ A AP P P A Q P APPSA+ ++AAA P P
Sbjct: 251 PAAAAALFPPAPPPPPHAYGYGPYGCGYGLQLPPYAPPSALFAAAAAAAAAAAFHPHSPP 310
Query: 54 ------GLMAQMATTAAGVAVGSAVGHTLGHAITG 82
G A++A TA G H LG A+ G
Sbjct: 311 PPPPPHGAAAELARTAFGYR-----PHPLGAALPG 340
Score = 26.6 bits (57), Expect = 8.6
Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 2 PRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAP--------PSAVGSSAAAPRQP 53
P G+ + +R A P A P P P + A P P ++ S P
Sbjct: 315 PHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAGGPGASALARSPFSIESIIGGSLGP 374
Query: 54 GLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPA 93
A A AA A S + G SGG A A
Sbjct: 375 AAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQA 414
Score = 26.6 bits (57), Expect = 8.6
Identities = 21/66 (31%), Positives = 26/66 (39%)
Query: 25 APRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGHTLGHAITGGF 84
A A AQ AAA S S AAP PG A V +A+ +L A
Sbjct: 375 AAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAVGPAAALTRSLVAAAAAAA 434
Query: 85 SGGSNA 90
S S++
Sbjct: 435 SSVSSS 440
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 38.5 bits (88), Expect = 0.002
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 4 GSRSRTSRMAPPASRAPQMRAAP-----RPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQ 58
G+ + APP++ P+ AP PAP AQ A APP+ G S PR P +
Sbjct: 339 GNNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQ--AVAPPAPSGPSTTQPRPPSV--- 393
Query: 59 MATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEP 102
+ G G + ++ GG +G N + + P
Sbjct: 394 QPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSP 437
Score = 26.6 bits (57), Expect = 8.6
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 16 ASRAPQMRAAPRPAPVAQPPAAAPPSAV--GSSAAAPRQPGLMAQMATTAAGVAVGSAVG 73
+++ PQ A P P PPAA+ S + AP P +A G A
Sbjct: 310 SNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAP-------PSALGPKASPAPS 362
Query: 74 HTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPA 108
H G + A P+ P T P QP+
Sbjct: 363 HNSGTPAPYAQAVAPPA-PSGPSTTQPRPPSVQPS 396
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 38.1 bits (87), Expect = 0.003
Identities = 35/115 (30%), Positives = 45/115 (39%), Gaps = 13/115 (11%)
Query: 12 MAPPASRAPQM------RAAP----RPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMAT 61
MAPPAS P+ AAP R P A PP PP A AA+P P +A +
Sbjct: 751 MAPPASAPPEFLDPLMGAAAPQYPGRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPGS 810
Query: 62 --TAAGVAVGSAVGHT-LGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQP 113
++ G G + T + G F GG AE P+ P + P
Sbjct: 811 GLSSPGPKPGDSGYETETPFSPEGAFPGGGAAEEEGVPRPRAPPEPPDPGAPRPP 865
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 37.7 bits (86), Expect = 0.004
Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 15/114 (13%)
Query: 6 RSRTSRMAPPASRAPQMRAAPR------PAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQM 59
R + APPA AP A P PAP A PPA+AP A P
Sbjct: 503 RLKAEPAAPPA--APSTPAPPPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQSTPT 560
Query: 60 ATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQP 113
AA + S G T + SG A P P + +E G +P ++ P
Sbjct: 561 PGVAAAPTLVSGGGST-----SSTSSGSFEASPVEPQLPSKE--GPEPPEEVPP 607
Score = 28.5 bits (62), Expect = 2.3
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 4 GSRSRTSRMAPPASRAPQMRAAP-RPAPVAQPPAAAPPS 41
GS + S +AP AP + P+A PP APPS
Sbjct: 1109 GSETHESDLAPSDKEAPTPKEGTLTQVPLAPPPPGAPPS 1147
Score = 26.6 bits (57), Expect = 8.6
Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 14/100 (14%)
Query: 14 PPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQP-GLMAQMATTAAGVAVGSAV 72
PP SR P PRP P PP + + + + P AQ+ AG V
Sbjct: 849 PPISRFPLEEPGPRPLP--WPPGSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPARGV 906
Query: 73 GHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQ 112
G SGG P R + + G +P ++
Sbjct: 907 G-----------SGGQGPPPPRRESRTETRWGPRPGSSRR 935
>gi|39930315 neurexophilin 4 [Homo sapiens]
Length = 308
Score = 37.4 bits (85), Expect = 0.005
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 59 MATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEI 118
MA AAG +G ++G L + GG G A+ +R + E + T A++ +PCLY+
Sbjct: 195 MAAAAAGPGLGGSLGGALAGPL-GGALGVPGAKESRAFNCHVEYEKTNRARKHRPCLYDP 253
Query: 119 KQ--FLECAQNQ 128
Q F E Q+Q
Sbjct: 254 SQVCFTEHTQSQ 265
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 37.0 bits (84), Expect = 0.006
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 5 SRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQM 59
S + T+ A P A AAP P A P++APP + SS++APR+P + +
Sbjct: 1407 SATATAAPAAPEDAATSAAAAPGEGPAA--PSSAPPPSNSSSSSAPRRPSSLQSL 1459
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 37.0 bits (84), Expect = 0.006
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 1 MPRGSRSRTSRMAP-PASRAPQMRAAPRPAPVAQP-PAAAPPSAVGSSAAAPRQPGLMAQ 58
+P S S + P P S A P +P P P+ PP SAA+P P L +
Sbjct: 794 LPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSS 853
Query: 59 MATTAAGVAVGSAVGHTLG-----HAITGGFSGGSNAEPARPDITYQ----EPQGTQPAQ 109
+++++ + S+ + AI+ S G N E + P I+++ E +G +P +
Sbjct: 854 SSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEASLPMISFKQEELENEGLKPRE 913
Query: 110 QQQ 112
+ Q
Sbjct: 914 EPQ 916
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 37.0 bits (84), Expect = 0.006
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 1 MPRGSRSRTSRMAP-PASRAPQMRAAPRPAPVAQP-PAAAPPSAVGSSAAAPRQPGLMAQ 58
+P S S + P P S A P +P P P+ PP SAA+P P L +
Sbjct: 995 LPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSS 1054
Query: 59 MATTAAGVAVGSAVGHTLG-----HAITGGFSGGSNAEPARPDITYQ----EPQGTQPAQ 109
+++++ + S+ + AI+ S G N E + P I+++ E +G +P +
Sbjct: 1055 SSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEASLPMISFKQEELENEGLKPRE 1114
Query: 110 QQQ 112
+ Q
Sbjct: 1115 EPQ 1117
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 37.0 bits (84), Expect = 0.006
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 1 MPRGSRSRTSRMAP-PASRAPQMRAAPRPAPVAQP-PAAAPPSAVGSSAAAPRQPGLMAQ 58
+P S S + P P S A P +P P P+ PP SAA+P P L +
Sbjct: 995 LPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSS 1054
Query: 59 MATTAAGVAVGSAVGHTLG-----HAITGGFSGGSNAEPARPDITYQ----EPQGTQPAQ 109
+++++ + S+ + AI+ S G N E + P I+++ E +G +P +
Sbjct: 1055 SSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEASLPMISFKQEELENEGLKPRE 1114
Query: 110 QQQ 112
+ Q
Sbjct: 1115 EPQ 1117
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 36.6 bits (83), Expect = 0.008
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 13 APPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGVAVGSAV 72
APP+S AP A P P A PA SA + AAP P ATT A ++ +
Sbjct: 201 APPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPS-----ATTPAPLSSSAPP 255
Query: 73 GHTLGHAITGGFSGGSNAEPARPDITY--QEPQGTQPAQQQQPCLYE 117
T + ++ A P+ T P T PA P E
Sbjct: 256 ETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQE 302
Score = 33.5 bits (75), Expect = 0.070
Identities = 20/52 (38%), Positives = 23/52 (44%)
Query: 7 SRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQ 58
S + +AP S APQ A P P A PA SA + AAP P Q
Sbjct: 149 SSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQ 200
Score = 32.3 bits (72), Expect = 0.16
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 13 APPASRAPQMRAAPRPAP----VAQPPAAAPPSAVGS----SAAAPRQPGLMAQMATTAA 64
APP+S AP A P P A P ++APP + A P P A TTAA
Sbjct: 178 APPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAA 237
Score = 28.9 bits (63), Expect = 1.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 13 APPASRAPQ-MRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATT 62
APP+S APQ AAP P + P AP ++ S+A + + TT
Sbjct: 293 APPSSPAPQETTAAPITTPNSSPTTLAPDTSETSAAPTHQTTTSVTTQTTT 343
>gi|239753493 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 36.6 bits (83), Expect = 0.008
Identities = 32/78 (41%), Positives = 34/78 (43%), Gaps = 16/78 (20%)
Query: 2 PRGSRSRTSRM--APPASRAPQMRAAP-----RPAPVAQPPA--------AAPPSAVGSS 46
PR RS+ R P RAP AAP P P Q A A PPS+ S
Sbjct: 168 PRAPRSQELRSWAQPAGGRAPGC-AAPWVPQCHPLPPGQSSAERYRALCPALPPSSAPSG 226
Query: 47 AAAPRQPGLMAQMATTAA 64
A APR P L Q TTAA
Sbjct: 227 AEAPRSPPLRLQRYTTAA 244
>gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo
sapiens]
Length = 254
Score = 36.6 bits (83), Expect = 0.008
Identities = 32/78 (41%), Positives = 34/78 (43%), Gaps = 16/78 (20%)
Query: 2 PRGSRSRTSRM--APPASRAPQMRAAP-----RPAPVAQPPA--------AAPPSAVGSS 46
PR RS+ R P RAP AAP P P Q A A PPS+ S
Sbjct: 168 PRAPRSQELRSWAQPAGGRAPGC-AAPWVPQCHPLPPGQSSAERYRALCPALPPSSAPSG 226
Query: 47 AAAPRQPGLMAQMATTAA 64
A APR P L Q TTAA
Sbjct: 227 AEAPRSPPLRLQRYTTAA 244
>gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo
sapiens]
Length = 254
Score = 36.6 bits (83), Expect = 0.008
Identities = 32/78 (41%), Positives = 34/78 (43%), Gaps = 16/78 (20%)
Query: 2 PRGSRSRTSRM--APPASRAPQMRAAP-----RPAPVAQPPA--------AAPPSAVGSS 46
PR RS+ R P RAP AAP P P Q A A PPS+ S
Sbjct: 168 PRAPRSQELRSWAQPAGGRAPGC-AAPWVPQCHPLPPGQSSAERYRALCPALPPSSAPSG 226
Query: 47 AAAPRQPGLMAQMATTAA 64
A APR P L Q TTAA
Sbjct: 227 AEAPRSPPLRLQRYTTAA 244
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 36.6 bits (83), Expect = 0.008
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 13 APPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGVAVGSAV 72
APP+S AP A P P A PA SA + AAP P ATT A ++ +
Sbjct: 201 APPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPS-----ATTPAPLSSSAPP 255
Query: 73 GHTLGHAITGGFSGGSNAEPARPDITY--QEPQGTQPAQQQQPCLYE 117
T + ++ A P+ T P T PA P E
Sbjct: 256 ETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQE 302
Score = 33.5 bits (75), Expect = 0.070
Identities = 20/52 (38%), Positives = 23/52 (44%)
Query: 7 SRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQ 58
S + +AP S APQ A P P A PA SA + AAP P Q
Sbjct: 149 SSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQ 200
Score = 32.3 bits (72), Expect = 0.16
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 13 APPASRAPQMRAAPRPAP----VAQPPAAAPPSAVGS----SAAAPRQPGLMAQMATTAA 64
APP+S AP A P P A P ++APP + A P P A TTAA
Sbjct: 178 APPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAA 237
Score = 28.9 bits (63), Expect = 1.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 13 APPASRAPQ-MRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATT 62
APP+S APQ AAP P + P AP ++ S+A + + TT
Sbjct: 293 APPSSPAPQETTAAPITTPNSSPTTLAPDTSETSAAPTHQTTTSVTTQTTT 343
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 36.6 bits (83), Expect = 0.008
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 13 APPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGVAVGSAV 72
APP+S AP A P P A PA SA + AAP P ATT A ++ +
Sbjct: 201 APPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPS-----ATTPAPLSSSAPP 255
Query: 73 GHTLGHAITGGFSGGSNAEPARPDITY--QEPQGTQPAQQQQPCLYE 117
T + ++ A P+ T P T PA P E
Sbjct: 256 ETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQE 302
Score = 33.5 bits (75), Expect = 0.070
Identities = 20/52 (38%), Positives = 23/52 (44%)
Query: 7 SRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQ 58
S + +AP S APQ A P P A PA SA + AAP P Q
Sbjct: 149 SSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQ 200
Score = 32.3 bits (72), Expect = 0.16
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 13 APPASRAPQMRAAPRPAP----VAQPPAAAPPSAVGS----SAAAPRQPGLMAQMATTAA 64
APP+S AP A P P A P ++APP + A P P A TTAA
Sbjct: 178 APPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAA 237
Score = 28.9 bits (63), Expect = 1.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 13 APPASRAPQ-MRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATT 62
APP+S APQ AAP P + P AP ++ S+A + + TT
Sbjct: 293 APPSSPAPQETTAAPITTPNSSPTTLAPDTSETSAAPTHQTTTSVTTQTTT 343
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 36.6 bits (83), Expect = 0.008
Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 2 PRGSRSRTSRMAPPA-----SRAPQMRAAPR--PAPVAQPPAAAPPS 41
P+G+ R R A PA SR ++RAAPR PAP Q P AA PS
Sbjct: 2021 PQGASPRRGRPALPAVFLCSSRCEELRAAPRQGPAPARQRPPAARPS 2067
Score = 30.8 bits (68), Expect = 0.46
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 24/112 (21%)
Query: 2 PRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMAT 61
P + RTS + +R PAP PAA PP A QP L+A
Sbjct: 1523 PTPTHRRTSAIPRAFTRERPQGRKEAPAPSKAAPAAPPP--------ARTQPSLIADETP 1574
Query: 62 TAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQP 113
++++ S S EP+ P + P+G +PA + P
Sbjct: 1575 PC--------------YSLSSSASSLSEPEPSEPPAVH--PRGREPAVTKDP 1610
Score = 29.3 bits (64), Expect = 1.3
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 2 PRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAP--RQPGLMAQM 59
PRG++ +T+ P R + P PAP AQP P A A P QP A++
Sbjct: 1774 PRGTQ-KTTPGVPAVLRGRTVIYVPSPAPRAQPKGTPGPRATPRKVAPPCLAQPAAPAKV 1832
>gi|7705881 zinc finger protein 580 [Homo sapiens]
Length = 172
Score = 36.6 bits (83), Expect = 0.008
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 14 PPASRAPQMRAAPRPAPVAQP-PAAAPPSAVGSSAAAPRQPGLMAQMATTAAGV 66
PP R+ A P P A P P A PS+ SSAA PR P L + A GV
Sbjct: 8 PPHPRSSSPEAMDPPPPKAPPFPKAEGPSSTPSSAAGPRPPRLGRHLLIDANGV 61
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 36.6 bits (83), Expect = 0.008
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 12 MAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGVAVGSA 71
M PPA P AAP P+P+ + P +P + S + QPG T + ++ GSA
Sbjct: 543 MQPPAP--PAELAAPLPSPLPEQPLDSPAAPALSPSGLGLQPGPERTSTTKSKELSPGSA 600
Query: 72 ----VGHTLGHAITGGFSGGSNAEP-ARPDITYQEPQGTQPAQQQQP 113
G + G A G G A+P A+P + P +QP Q P
Sbjct: 601 QKGSPGSSQGTACAGTQPG---AQPGAQPGAS---PSPSQPPADQSP 641
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.128 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,084,828
Number of Sequences: 37866
Number of extensions: 389004
Number of successful extensions: 8673
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 700
Number of HSP's that attempted gapping in prelim test: 5143
Number of HSP's gapped (non-prelim): 3409
length of query: 151
length of database: 18,247,518
effective HSP length: 93
effective length of query: 58
effective length of database: 14,725,980
effective search space: 854106840
effective search space used: 854106840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.