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Search of human proteins with 14042964
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14042964 TLH29 protein precursor [Homo sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14042964 TLH29 protein precursor [Homo sapiens] 246 5e-66
gi|46048520 interferon, alpha-inducible protein 27-like 1 [Homo ... 121 2e-28
gi|21699070 interferon, alpha-inducible protein 27-like 1 [Homo ... 121 2e-28
gi|194272171 interferon, alpha-inducible protein 27 isoform 1 [H... 114 3e-26
gi|55925614 interferon, alpha-inducible protein 27 isoform 2 [Ho... 106 5e-24
gi|13259550 interferon, alpha-inducible protein 6 isoform c [Hom... 85 2e-17
gi|13259548 interferon, alpha-inducible protein 6 isoform b [Hom... 85 2e-17
gi|13259552 interferon, alpha-inducible protein 6 isoform a [Hom... 85 2e-17
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 37 0.006
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 37 0.006
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 37 0.006
gi|126352608 elastin isoform e precursor [Homo sapiens] 36 0.010
gi|126352440 elastin isoform a precursor [Homo sapiens] 36 0.010
gi|6912246 CD3E antigen, epsilon polypeptide associated protein ... 34 0.029
gi|22325364 ubiquitin associated protein 2 [Homo sapiens] 34 0.029
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 34 0.029
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.037
gi|14149631 ring finger protein 112 [Homo sapiens] 33 0.064
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 32 0.11
gi|7706435 headcase [Homo sapiens] 32 0.11
gi|133922582 zinc finger protein 358 [Homo sapiens] 32 0.11
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 32 0.14
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 32 0.14
gi|150170670 piccolo isoform 2 [Homo sapiens] 32 0.14
gi|150378539 piccolo isoform 1 [Homo sapiens] 32 0.14
gi|116734702 homeobox D13 [Homo sapiens] 32 0.19
gi|148747864 JAW1-related protein isoform a [Homo sapiens] 32 0.19
gi|154091332 JAW1-related protein isoform b [Homo sapiens] 32 0.19
gi|148728182 JAW1-related protein isoform b [Homo sapiens] 32 0.19
gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens] 31 0.24
>gi|14042964 TLH29 protein precursor [Homo sapiens]
Length = 130
Score = 246 bits (627), Expect = 5e-66
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MMKRAAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLV 60
MMKRAAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLV
Sbjct: 1 MMKRAAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLV 60
Query: 61 ATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSLPAEPEAKEDEARENVPQGEPPK 120
ATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSLPAEPEAKEDEARENVPQGEPPK
Sbjct: 61 ATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSLPAEPEAKEDEARENVPQGEPPK 120
Query: 121 PPLKSEKHEE 130
PPLKSEKHEE
Sbjct: 121 PPLKSEKHEE 130
>gi|46048520 interferon, alpha-inducible protein 27-like 1 [Homo
sapiens]
Length = 104
Score = 121 bits (303), Expect = 2e-28
Identities = 66/94 (70%), Positives = 74/94 (78%)
Query: 3 KRAAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLVAT 62
+ A AA VGG +AVG V V LSAMGFT GIAASSIAAKMMS AAIANGGGV+AGSLVA
Sbjct: 11 RAAVAAVVGGVVAVGTVLVALSAMGFTSVGIAASSIAAKMMSTAAIANGGGVAAGSLVAI 70
Query: 63 LQSVGAAGLSTSSNILLASVGSVLGACLGNSPSS 96
LQSVGAAGLS +S ++ G+ LGA LG+ PSS
Sbjct: 71 LQSVGAAGLSVTSKVIGGFAGTALGAWLGSPPSS 104
>gi|21699070 interferon, alpha-inducible protein 27-like 1 [Homo
sapiens]
Length = 104
Score = 121 bits (303), Expect = 2e-28
Identities = 66/94 (70%), Positives = 74/94 (78%)
Query: 3 KRAAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLVAT 62
+ A AA VGG +AVG V V LSAMGFT GIAASSIAAKMMS AAIANGGGV+AGSLVA
Sbjct: 11 RAAVAAVVGGVVAVGTVLVALSAMGFTSVGIAASSIAAKMMSTAAIANGGGVAAGSLVAI 70
Query: 63 LQSVGAAGLSTSSNILLASVGSVLGACLGNSPSS 96
LQSVGAAGLS +S ++ G+ LGA LG+ PSS
Sbjct: 71 LQSVGAAGLSVTSKVIGGFAGTALGAWLGSPPSS 104
>gi|194272171 interferon, alpha-inducible protein 27 isoform 1 [Homo
sapiens]
Length = 122
Score = 114 bits (284), Expect = 3e-26
Identities = 58/89 (65%), Positives = 72/89 (80%)
Query: 2 MKRAAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLVA 61
+ R A +GG +A+ AVP+VLSAMGFT AGIA+SSIAAKMMSAAAIANGGGV++GSLVA
Sbjct: 30 LARIATVVIGGVVAMAAVPMVLSAMGFTAAGIASSSIAAKMMSAAAIANGGGVASGSLVA 89
Query: 62 TLQSVGAAGLSTSSNILLASVGSVLGACL 90
TLQS+GA GLS + +L S+GS + A +
Sbjct: 90 TLQSLGATGLSGLTKFILGSIGSAIAAVI 118
>gi|55925614 interferon, alpha-inducible protein 27 isoform 2 [Homo
sapiens]
Length = 119
Score = 106 bits (265), Expect = 5e-24
Identities = 57/89 (64%), Positives = 70/89 (78%), Gaps = 3/89 (3%)
Query: 2 MKRAAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLVA 61
+ R A +GG +AV P+VLSAMGFT AGIA+SSIAAKMMSAAAIANGGGV++GSLVA
Sbjct: 30 LARIATVVIGGVVAV---PMVLSAMGFTAAGIASSSIAAKMMSAAAIANGGGVASGSLVA 86
Query: 62 TLQSVGAAGLSTSSNILLASVGSVLGACL 90
TLQS+GA GLS + +L S+GS + A +
Sbjct: 87 TLQSLGATGLSGLTKFILGSIGSAIAAVI 115
>gi|13259550 interferon, alpha-inducible protein 6 isoform c [Homo
sapiens]
Length = 138
Score = 84.7 bits (208), Expect = 2e-17
Identities = 45/79 (56%), Positives = 61/79 (77%), Gaps = 8/79 (10%)
Query: 9 AVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLVATLQSVGA 68
AVGG LAV +P A+GFTGAGIAA+S+AA +MS +AI NGGGV AG LVATLQS+GA
Sbjct: 54 AVGGGLAVAGLP----ALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGA 109
Query: 69 AGLSTSSNILLASVGSVLG 87
G S++++ ++G+++G
Sbjct: 110 GG----SSVVIGNIGALMG 124
>gi|13259548 interferon, alpha-inducible protein 6 isoform b [Homo
sapiens]
Length = 134
Score = 84.7 bits (208), Expect = 2e-17
Identities = 45/79 (56%), Positives = 61/79 (77%), Gaps = 8/79 (10%)
Query: 9 AVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLVATLQSVGA 68
AVGG LAV +P A+GFTGAGIAA+S+AA +MS +AI NGGGV AG LVATLQS+GA
Sbjct: 50 AVGGGLAVAGLP----ALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGA 105
Query: 69 AGLSTSSNILLASVGSVLG 87
G S++++ ++G+++G
Sbjct: 106 GG----SSVVIGNIGALMG 120
>gi|13259552 interferon, alpha-inducible protein 6 isoform a [Homo
sapiens]
Length = 130
Score = 84.7 bits (208), Expect = 2e-17
Identities = 45/79 (56%), Positives = 61/79 (77%), Gaps = 8/79 (10%)
Query: 9 AVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLVATLQSVGA 68
AVGG LAV +P A+GFTGAGIAA+S+AA +MS +AI NGGGV AG LVATLQS+GA
Sbjct: 46 AVGGGLAVAGLP----ALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGA 101
Query: 69 AGLSTSSNILLASVGSVLG 87
G S++++ ++G+++G
Sbjct: 102 GG----SSVVIGNIGALMG 116
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 36.6 bits (83), Expect = 0.006
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 24 SAMGFTGAGIAASSIAAKMMSAAAIANGGG---VSAGSLVATLQSVGAA-GLSTSSNILL 79
S G G G S ++AA+ +GGG +SAG VA+ + A+ G S+SS+
Sbjct: 89 SGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSS 148
Query: 80 ASVGSVLGACLGNSPSSSLPAEPEAKEDEARENVPQGEPPK 120
+S S + +S LP +P EN PQ K
Sbjct: 149 SSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVENTPQNNECK 189
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 36.6 bits (83), Expect = 0.006
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 24 SAMGFTGAGIAASSIAAKMMSAAAIANGGG---VSAGSLVATLQSVGAA-GLSTSSNILL 79
S G G G S ++AA+ +GGG +SAG VA+ + A+ G S+SS+
Sbjct: 89 SGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSS 148
Query: 80 ASVGSVLGACLGNSPSSSLPAEPEAKEDEARENVPQGEPPK 120
+S S + +S LP +P EN PQ K
Sbjct: 149 SSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVENTPQNNECK 189
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 36.6 bits (83), Expect = 0.006
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 24 SAMGFTGAGIAASSIAAKMMSAAAIANGGG---VSAGSLVATLQSVGAA-GLSTSSNILL 79
S G G G S ++AA+ +GGG +SAG VA+ + A+ G S+SS+
Sbjct: 89 SGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSS 148
Query: 80 ASVGSVLGACLGNSPSSSLPAEPEAKEDEARENVPQGEPPK 120
+S S + +S LP +P EN PQ K
Sbjct: 149 SSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVENTPQNNECK 189
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 35.8 bits (81), Expect = 0.010
Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 8 AAVGGALA-VGAVPVVLSAMGFTGAGIAASSIAAKMMSAAA------IANGGGVSAGSL- 59
AAV G L +GA+ V G GAG AA++ AAK + AA A GG+ G L
Sbjct: 578 AAVPGVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLG 637
Query: 60 ---VATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSLPAEP 102
V L + A + ++ A +G VLG G P + A P
Sbjct: 638 VPGVGGLGGIPPAAAAKAAKYGAAGLGGVLGGA-GQFPLGGVAARP 682
Score = 30.0 bits (66), Expect = 0.54
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 7 AAAVGGALAVGAVPVVLSAMGFTGAGIAAS-----SIAAKMMSAAAIANGGGVSAGSLVA 61
A VG A VG P V A G G+AA+ +AAK AA G G+ +
Sbjct: 479 APGVGVAPGVGVAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGV-- 536
Query: 62 TLQSVGAAGLSTSSNILLASVGS 84
VG GL + + VG+
Sbjct: 537 ---GVGVPGLGVGAGVPGLGVGA 556
Score = 28.1 bits (61), Expect = 2.1
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 11 GGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVS-------AGSLVATL 63
GGAL G P+ G GAG+ A A ++ GGV+ A A L
Sbjct: 53 GGALGPGGKPLKPVPGGLAGAGLGAGLGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGL 112
Query: 64 QSV-GAAGLSTSSNILLASVGSVLGACLGNSPSSSLP 99
V G GL S+ ++ G+ G G P LP
Sbjct: 113 GGVPGVGGLGVSAGAVVPQPGA--GVKPGKVPGVGLP 147
Score = 27.7 bits (60), Expect = 2.7
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 10 VGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAA---IANG---GGVSAGSLVATL 63
VGGA G + G G G A++ AA + AA A G GG G V +
Sbjct: 277 VGGAGVPGVPGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGV 336
Query: 64 QSVGAAGLST-SSNILLASVGSVLGACLGN--SPSSSLPAEPEAKEDEARENVPQGEPP 119
G G+ + I + + GA + SP ++ A +A + AR V G P
Sbjct: 337 PGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIP 395
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 35.8 bits (81), Expect = 0.010
Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 8 AAVGGALA-VGAVPVVLSAMGFTGAGIAASSIAAKMMSAAA------IANGGGVSAGSL- 59
AAV G L +GA+ V G GAG AA++ AAK + AA A GG+ G L
Sbjct: 597 AAVPGVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLG 656
Query: 60 ---VATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSLPAEP 102
V L + A + ++ A +G VLG G P + A P
Sbjct: 657 VPGVGGLGGIPPAAAAKAAKYGAAGLGGVLGGA-GQFPLGGVAARP 701
Score = 30.0 bits (66), Expect = 0.54
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 7 AAAVGGALAVGAVPVVLSAMGFTGAGIAAS-----SIAAKMMSAAAIANGGGVSAGSLVA 61
A VG A VG P V A G G+AA+ +AAK AA G G+ +
Sbjct: 498 APGVGVAPGVGVAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGV-- 555
Query: 62 TLQSVGAAGLSTSSNILLASVGS 84
VG GL + + VG+
Sbjct: 556 ---GVGVPGLGVGAGVPGLGVGA 575
Score = 28.1 bits (61), Expect = 2.1
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 11 GGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVS-------AGSLVATL 63
GGAL G P+ G GAG+ A A ++ GGV+ A A L
Sbjct: 53 GGALGPGGKPLKPVPGGLAGAGLGAGLGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGL 112
Query: 64 QSV-GAAGLSTSSNILLASVGSVLGACLGNSPSSSLP 99
V G GL S+ ++ G+ G G P LP
Sbjct: 113 GGVPGVGGLGVSAGAVVPQPGA--GVKPGKVPGVGLP 147
Score = 27.7 bits (60), Expect = 2.7
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 10 VGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAA---IANG---GGVSAGSLVATL 63
VGGA G + G G G A++ AA + AA A G GG G V +
Sbjct: 277 VGGAGVPGVPGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGV 336
Query: 64 QSVGAAGLST-SSNILLASVGSVLGACLGN--SPSSSLPAEPEAKEDEARENVPQGEPP 119
G G+ + I + + GA + SP ++ A +A + AR V G P
Sbjct: 337 PGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIP 395
>gi|6912246 CD3E antigen, epsilon polypeptide associated protein
[Homo sapiens]
Length = 510
Score = 34.3 bits (77), Expect = 0.029
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 93 SPSSSLPAEPEAKEDEARENVPQGEPPKPPLKSEKHEE 130
+P S+ + +++E E VPQ E P PPL SE EE
Sbjct: 456 TPGSTKKRKKQSQESRMPETVPQEEMPGPPLNSESGEE 493
>gi|22325364 ubiquitin associated protein 2 [Homo sapiens]
Length = 1119
Score = 34.3 bits (77), Expect = 0.029
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 31 AGIAASSIAAKMMSAAAIANGGGVSAGSLVATLQSVGAAGLSTSSNILLASVGSVLGACL 90
A +++S+ +A ++ + + ++ S ++G S SS++ A+ CL
Sbjct: 716 AALSSSTSHTHASVESASSHQSSATFSTAATSVSSSASSGASLSSSMNTAN-----SLCL 770
Query: 91 GNSP----SSSLPAEPEAKEDEARENVPQGEPP 119
G +P SSS A P +A N+PQG PP
Sbjct: 771 GGTPASASSSSSRAAPLVTSGKAPPNLPQGVPP 803
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 34.3 bits (77), Expect = 0.029
Identities = 23/78 (29%), Positives = 27/78 (34%)
Query: 25 AMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLVATLQSVGAAGLSTSSNILLASVGS 84
A G GAG AA A GGG G A GA+G T N G
Sbjct: 319 AAGLAGAGGGGGGAVGAFGGAAGGAGGGGGGGGGAGAERDRGGASGFLTLHNAFPKEAGG 378
Query: 85 VLGACLGNSPSSSLPAEP 102
+ + P+ PA P
Sbjct: 379 GVTVTVTGPPAPPAPAPP 396
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.9 bits (76), Expect = 0.037
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 17/144 (11%)
Query: 1 MMKRAAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLV 60
++ + A +L+ GAV S+ G ++ + G S +
Sbjct: 2462 LIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSAL 2521
Query: 61 ATLQ---------SVGAAGLSTSSNILLASVGSVLGACLGNSPSSSLPAEPE-------A 104
A LQ S ++ S+SS+ +S S G+ +S SSLP +PE +
Sbjct: 2522 AALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPS 2581
Query: 105 KEDEARENVPQGEPPKP-PLKSEK 127
+E V +G PP+P P K ++
Sbjct: 2582 PTPAPKEAVREGRPPEPTPAKRKR 2605
>gi|14149631 ring finger protein 112 [Homo sapiens]
Length = 632
Score = 33.1 bits (74), Expect = 0.064
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 22/84 (26%)
Query: 8 AAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLVATLQSVG 67
AAVGGA+ G + + A G GAG+AA+++AA+ G V+AG+ +VG
Sbjct: 549 AAVGGAVGAGLMGL---AGGVVGAGMAAAALAAE---------AGMVAAGA------AVG 590
Query: 68 AAGLSTSSNILLASVGSVLGACLG 91
A G + ++ VG+ L A +G
Sbjct: 591 ATGAA----VVGGGVGAGLAATVG 610
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 32.3 bits (72), Expect = 0.11
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 15/127 (11%)
Query: 4 RAAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMS-------------AAAIAN 50
RAAAAA A G P++++++ F G + + + S A A
Sbjct: 2727 RAAAAAAAVASTSGINPLLVNSL-FAGMDLTSLQNLQNLQSLQLAGLMGFPPGLATAATA 2785
Query: 51 GGGVSAGSLVATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSLPAEPEAKEDEAR 110
GG + V L G AGL L + + L A GN+ ++S EPE +
Sbjct: 2786 GGDAKNPAAVLPLMLPGMAGLPNVFG-LGGLLNNPLSAATGNTTTASSQGEPEDSTSKGE 2844
Query: 111 ENVPQGE 117
E + E
Sbjct: 2845 EKGNENE 2851
>gi|7706435 headcase [Homo sapiens]
Length = 543
Score = 32.3 bits (72), Expect = 0.11
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 5 AAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAG 57
AA AA GGALA A +A G GAG AA + A +A A A G +AG
Sbjct: 35 AAGAAAGGALAAAA-GCGAAAAGAPGAGGAAGAGGAGTGAANAAAAAGAAAAG 86
>gi|133922582 zinc finger protein 358 [Homo sapiens]
Length = 568
Score = 32.3 bits (72), Expect = 0.11
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 34 AASSIAAKMMSAAAIANGGGVSAGSLVATLQSVGAAGLSTSSNILLASVGSVLGACLGNS 93
AA++ AA +AAA A G G+ G A++ G L + SVLG+ LG S
Sbjct: 400 AAAAAAAAAAAAAAAAAGLGLGPGLSPASMMRPGQVSLLGPDAV------SVLGSGLGLS 453
Query: 94 PSSSLPAEPEAKEDEARENVPQGEP 118
P +S P+ P +P
Sbjct: 454 PGTSSGRNPDPGSGPGTLPDPSSKP 478
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 32.0 bits (71), Expect = 0.14
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 5 AAAAAVGGALAV---GAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGG 53
AAAA V GA+ V GA P++L G +GAG + +S+ K G G
Sbjct: 509 AAAAVVYGAVPVPLLGAHPLLLGGAGTSGAGGSGASVPGKTFCCGICGRGFG 560
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 32.0 bits (71), Expect = 0.14
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 5 AAAAAVGGALAV---GAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGG 53
AAAA V GA+ V GA P++L G +GAG + +S+ K G G
Sbjct: 509 AAAAVVYGAVPVPLLGAHPLLLGGAGTSGAGGSGASVPGKTFCCGICGRGFG 560
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.0 bits (71), Expect = 0.14
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 43 MSAAAIANGGGVSAGSLVATLQSVG-AAGLSTSSNILLASVGSVLGACLGNSPSSSLPAE 101
++AAA A GG AGS T G A LS S + +V+ G S PA
Sbjct: 16 LAAAAAAGGGASGAGSPSHTAIPAGMEADLSQLSEEERRQIAAVMSRAQGLPKGSVPPAA 75
Query: 102 PEAKEDEARENVPQGEPPK 120
E+ ++ + PPK
Sbjct: 76 AESPSMHRKQELDSSHPPK 94
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 32.0 bits (71), Expect = 0.14
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 43 MSAAAIANGGGVSAGSLVATLQSVG-AAGLSTSSNILLASVGSVLGACLGNSPSSSLPAE 101
++AAA A GG AGS T G A LS S + +V+ G S PA
Sbjct: 16 LAAAAAAGGGASGAGSPSHTAIPAGMEADLSQLSEEERRQIAAVMSRAQGLPKGSVPPAA 75
Query: 102 PEAKEDEARENVPQGEPPK 120
E+ ++ + PPK
Sbjct: 76 AESPSMHRKQELDSSHPPK 94
>gi|116734702 homeobox D13 [Homo sapiens]
Length = 343
Score = 31.6 bits (70), Expect = 0.19
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 5 AAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLVATLQ 64
+++++V A A G LSA F G ++ AA +AAA A G G T +
Sbjct: 26 SSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAAAAAAAAAAAAASGFAYPG----TSE 81
Query: 65 SVGAAGLSTSSNILLA-SVGSVLGACLGNSPSSSLPAEPEA 104
G++ S+SS ++ A C +P+++ A P A
Sbjct: 82 RTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAAAPPSA 122
>gi|148747864 JAW1-related protein isoform a [Homo sapiens]
Length = 903
Score = 31.6 bits (70), Expect = 0.19
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 58 SLVATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSLPAEPEAKEDEARENVPQ-G 116
S V+ S A+ S+ SN L L C G P S LP P K DEA + P G
Sbjct: 182 SAVSPNLSPSASPTSSRSNSLTVPTPPGLDVCSG--PPSPLPGAPPQKGDEADVSSPHPG 239
Query: 117 EPPKP 121
EP P
Sbjct: 240 EPNVP 244
>gi|154091332 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 31.6 bits (70), Expect = 0.19
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 58 SLVATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSLPAEPEAKEDEARENVPQ-G 116
S V+ S A+ S+ SN L L C G P S LP P K DEA + P G
Sbjct: 100 SAVSPNLSPSASPTSSRSNSLTVPTPPGLDVCSG--PPSPLPGAPPQKGDEADVSSPHPG 157
Query: 117 EPPKP 121
EP P
Sbjct: 158 EPNVP 162
>gi|148728182 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 31.6 bits (70), Expect = 0.19
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 58 SLVATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSLPAEPEAKEDEARENVPQ-G 116
S V+ S A+ S+ SN L L C G P S LP P K DEA + P G
Sbjct: 100 SAVSPNLSPSASPTSSRSNSLTVPTPPGLDVCSG--PPSPLPGAPPQKGDEADVSSPHPG 157
Query: 117 EPPKP 121
EP P
Sbjct: 158 EPNVP 162
>gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens]
Length = 391
Score = 31.2 bits (69), Expect = 0.24
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 9/120 (7%)
Query: 1 MMKRAAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGG-----GVS 55
++K+ + GG LA GA + G G+ A+++ ++ S A GG G +
Sbjct: 129 LLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGAAGGGYAHVNGWA 188
Query: 56 AGSLVATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSLPAEPEAKEDEARENVPQ 115
G+ ++ + AA L + G GA G + + PA P A + PQ
Sbjct: 189 NGAYPGSVAAAAAAAAMMQEAQL--AYGQHPGA--GGAHPHAHPAHPHPHHPHAHPHNPQ 244
Score = 26.6 bits (57), Expect = 6.0
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 44 SAAAIANGGGVSAGSLVATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSLPAEPE 103
+AAA A GG S VA AA + SS L LG+ + + PS S PA
Sbjct: 281 AAAAAAAAGGAHQNSAVA----AAAAAAAASSGAL-----GALGSLVKSEPSGSPPAPAH 331
Query: 104 AK 105
++
Sbjct: 332 SR 333
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.122 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,003,915
Number of Sequences: 37866
Number of extensions: 220464
Number of successful extensions: 1910
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 1603
Number of HSP's gapped (non-prelim): 378
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.