Guide to the Human Genome
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Name: IFI27L1 Sequence: fasta or formatted (104aa) NCBI GI: 21699070
Description:

interferon, alpha-inducible protein 27-like 1

Referenced in:

Interferon

Other entries for this name:
alt mRNA [104aa] interferon, alpha-inducible protein 27-like 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            21.2         22           2
 C cysteine            0.0          0           0
 D aspartate           1.0          1           1
 E glutamate           1.0          1           1
 F phenylalanine       1.9          2           1
 G glycine            18.3         19           3
 H histidine           0.0          0           0
 I isoleucine          4.8          5           1
 K lysine              2.9          3           1
 L leucine             6.7          7           1
 M methionine          3.8          4           2
 N asparagine          1.0          1           1
 P proline             1.9          2           2
 Q glutamine           1.0          1           1
 R arginine            1.0          1           1
 S serine             13.5         14           2
 T threonine           4.8          5           1
 V valine             13.5         14           2
 W tryptophan          1.9          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon, alpha-inducible protein 27-like 1 
IFI27L1               1.000   interferon, alpha-inducible protein 27-like 1 
IFI27L2               0.561   TLH29 protein precursor 
IFI27                 0.444   interferon, alpha-inducible protein 27 isoform 1 [H...
IFI27                 0.421   interferon, alpha-inducible protein 27 isoform 2 [Ho...
IFI6                  0.310   interferon, alpha-inducible protein 6 isoform c [Hom...
IFI6                  0.310   interferon, alpha-inducible protein 6 isoform b [Hom...
IFI6                  0.310   interferon, alpha-inducible protein 6 isoform a [Hom...
RNF112                0.058   ring finger protein 112 
LOC100129410          0.041   PREDICTED: hypothetical protein 
LOC100292150          0.041   PREDICTED: hypothetical protein 
LOC100129410          0.041   PREDICTED: hypothetical protein 
LOC100290302          0.041   PREDICTED: hypothetical protein XP_002346480 
LOC100129410          0.041   PREDICTED: hypothetical protein 
LOC100287337          0.041   PREDICTED: hypothetical protein XP_002342320 
ELN                   0.035   elastin isoform e precursor 
ELN                   0.035   elastin isoform d precursor 
ELN                   0.035   elastin isoform c precursor 
ELN                   0.035   elastin isoform b precursor 
ELN                   0.035   elastin isoform a precursor 
SLC2A2                0.029   solute carrier family 2 (facilitated glucose transpor...
LOC100289996          0.023   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.023   PREDICTED: hypothetical protein XP_002343076 
RFC1                  0.018   replication factor C large subunit 
LOC100292594          0.018   PREDICTED: hypothetical protein 
LOC100290955          0.018   PREDICTED: hypothetical protein XP_002346424 
LOC100288670          0.018   PREDICTED: hypothetical protein XP_002342097 
FUSSEL18              0.018   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.018   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.018   PREDICTED: functional smad suppressing element 18 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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