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Search of human proteins with 139394621
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C)
precursor [Homo sapiens]
(539 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C) ... 1118 0.0
gi|57242793 interphotoreceptor matrix proteoglycan 2 [Homo sapiens] 65 2e-10
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 51 2e-06
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 48 2e-05
gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens] 47 4e-05
gi|73476377 LBXCOR1 homolog [Homo sapiens] 46 1e-04
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 45 1e-04
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] 45 1e-04
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 45 2e-04
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 44 4e-04
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 44 5e-04
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 43 6e-04
gi|33286446 opioid growth factor receptor [Homo sapiens] 43 8e-04
gi|153070262 meprin A alpha [Homo sapiens] 43 8e-04
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 43 8e-04
gi|62988361 absent in melanoma 1 [Homo sapiens] 43 8e-04
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 43 8e-04
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 43 8e-04
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 42 0.001
gi|156142199 euchromatic histone-lysine N-methyltransferase 2 is... 41 0.003
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 41 0.003
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 41 0.003
gi|38176300 nestin [Homo sapiens] 40 0.004
gi|156142197 euchromatic histone-lysine N-methyltransferase 2 is... 40 0.004
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 40 0.004
gi|119220603 ring finger protein 208 [Homo sapiens] 40 0.005
gi|169217681 PREDICTED: similar to hCG1747328, partial [Homo sap... 40 0.007
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ... 40 0.007
gi|239749213 PREDICTED: mucin 3B, cell surface associated, parti... 40 0.007
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ... 40 0.007
>gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C)
precursor [Homo sapiens]
Length = 539
Score = 1118 bits (2891), Expect = 0.0
Identities = 539/539 (100%), Positives = 539/539 (100%)
Query: 1 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR 60
MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
Sbjct: 1 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR 60
Query: 61 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA 120
EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
Sbjct: 61 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA 120
Query: 121 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG 180
QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
Sbjct: 121 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG 180
Query: 181 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD 240
GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
Sbjct: 181 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD 240
Query: 241 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL 300
TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
Sbjct: 241 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL 300
Query: 301 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR 360
LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
Sbjct: 301 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR 360
Query: 361 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ 420
SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
Sbjct: 361 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ 420
Query: 421 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA 480
VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
Sbjct: 421 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA 480
Query: 481 EGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT 539
EGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT
Sbjct: 481 EGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT 539
>gi|57242793 interphotoreceptor matrix proteoglycan 2 [Homo sapiens]
Length = 1241
Score = 64.7 bits (156), Expect = 2e-10
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 352 SSENGTECRSGFVR-HNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGM 410
S E C G++ C+S+CDL P +C N G+C ++ GA CRC + W++G
Sbjct: 1031 SGEAKCRCFPGYLSVEERPCQSLCDLQPDFCLNDGKCDIMPGHGAICRCRVGENWWYRGK 1090
Query: 411 RCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKKL 447
CE +++ ++ + + S +L++ + FF + L
Sbjct: 1091 HCEEFVSEPVIIGITIASVVGLLVIFSAIIYFFIRTL 1127
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 51.2 bits (121), Expect = 2e-06
Identities = 100/383 (26%), Positives = 138/383 (36%), Gaps = 64/383 (16%)
Query: 6 GGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWE--PPANDTREEA 63
G P GP P A + ++G VP+ G A L P PP R
Sbjct: 675 GSMPSAGPMP-----SAGPMPSAGPVPSARPGPPTTANHLGLSVPGLVSVPP----RLLP 725
Query: 64 GPP--AAGEDEASWTAPGGE---LAGPEEVLQESAAVTGTAWLEADSPGLGGV--TAEAG 116
GP AG +E AP G P+E V A++ D V + E+
Sbjct: 726 GPENHRAGSNEDPILAPSGTPPPTIPPDETF--GGRVPRPAFVHYDKEEASDVEISLESD 783
Query: 117 SGDAQALPATLQAPHEVLGQSIMPP--AIPEATEASGPPSPTPGDKLSPASELPKESPLE 174
S D+ + P + PP A P +GPP+ +P PA E P+E P
Sbjct: 784 SDDSVVI-----VPEGLPPLPPPPPSGATPPPIAPTGPPTASPP---VPAKEEPEELPAA 835
Query: 175 VWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGA----DLGSFPG 230
G P P P P TL P EG G G DL
Sbjct: 836 P-----GPLPPPPPPPPPVPGPVTLPPPQLVP-------EGTPGGGGPPALEEDLTVINI 883
Query: 231 SPGTSENHPDTEGETPSWSLLDLYDDFTPF--DESDFYPTTS-----FYDDLDEEE---E 280
+ E + E E + +DF DE +++ F ++ +EEE E
Sbjct: 884 NSSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELE 943
Query: 281 EEEDDKDAVGGGDLEDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALR 340
EEE+++D +LE+ +L T + G P + A+PP P S ++
Sbjct: 944 EEEEEEDEEEEEELEEVEDLEFGTAGGEVEEGAPPPPTLPPALPP-------PESPPKVQ 996
Query: 341 PRP-GEPGRDLASSENGTECRSG 362
P P EPG L E GTE G
Sbjct: 997 PEPEPEPGLLLEVEEPGTEEERG 1019
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 48.1 bits (113), Expect = 2e-05
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 224 DLGSFPGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEE 283
DLG T+ + D +G+ ++D D+ DE+D ++D +E+EE+++
Sbjct: 1919 DLGPLQSDQQTTTSSQDGQGKGDDVIVIDSDDEEEDDDEND-----GEHEDYEEDEEDDD 1973
Query: 284 DDKDAVGGGDL-EDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPR 342
DD+D G GD ED NE G G+ + A + G+ PG+
Sbjct: 1974 DDEDDTGMGDEGEDSNE----------GTGSADGNDGYEADDAEGGDGTDPGTETEESMG 2023
Query: 343 PGEPGRDLASSENGTECRSG 362
GE A S+N E +G
Sbjct: 2024 GGEGNHRAADSQNSGEGNTG 2043
>gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens]
Length = 825
Score = 47.0 bits (110), Expect = 4e-05
Identities = 56/201 (27%), Positives = 71/201 (35%), Gaps = 14/201 (6%)
Query: 9 PGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAA 68
P PL A A P E +A EA ++ A E PA++T EA P +
Sbjct: 488 PAEARSPLSEETSAEEAHAEVQSPLAEETTAEEASAEIQLLAAIEAPADETPAEAQSPLS 547
Query: 69 GEDEASWTAPGGELAGPEEVLQESAAVTGT--AWLEADSPGLGGVTAEAGSGDAQALPAT 126
E A P EV SA A LE P TAE S Q L AT
Sbjct: 548 EETSAE--------EAPAEVQSPSAKGVSIEEAPLELQPPSGEETTAEEASAAIQLLAAT 599
Query: 127 LQAPHEVLGQSIMPPAIPEATEASGPPS-PTPGDKLSPASELPKESPLEVWLNLGGSTPD 185
+ E + PPA E PP+ P + P +E E+P EV P
Sbjct: 600 EASAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAE---EAPAEVQPPPAEEAPA 656
Query: 186 PQGPELTYPFQGTLEPQPASD 206
P ++P PA +
Sbjct: 657 EVQPPPAEEAPAEVQPPPAEE 677
Score = 37.7 bits (86), Expect = 0.027
Identities = 57/175 (32%), Positives = 65/175 (37%), Gaps = 26/175 (14%)
Query: 27 ASGAVP--AREAGSAVEAEELVKGSPAWE-------PPANDTREEAGPPAAGEDEASWTA 77
AS A+ A SA EA V+ PA E PPA + E PP A E A
Sbjct: 589 ASAAIQLLAATEASAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQP 648
Query: 78 PGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQS 137
P E A P EV A A E P AE + Q+LPA E L
Sbjct: 649 PPAEEA-PAEVQPPPAE---EAPAEVQPP-----PAEEAPAEVQSLPAEETPIEETLAAV 699
Query: 138 IMPPA--IPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLGGSTPDPQGPE 190
PPA +P A EAS P D L L +E P+ P Q PE
Sbjct: 700 HSPPADDVP-AEEASVDKHSPPADLL-----LTEEFPIGEASAEVSPPPSEQTPE 748
Score = 34.3 bits (77), Expect = 0.30
Identities = 43/157 (27%), Positives = 52/157 (33%), Gaps = 10/157 (6%)
Query: 27 ASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGEDEASWTAPGGELAGPE 86
A P E SA EA V+ A + E PP+ E A + +L
Sbjct: 540 AEAQSPLSEETSAEEAPAEVQSPSAKGVSIEEAPLELQPPSGEETTAEEASAAIQLLAAT 599
Query: 87 EVLQESAAV------TGTAWLEADSPGLGGVTAEAGSGDAQALPATLQ-APHEVLGQSIM 139
E E A A E P AE A+ PA +Q P E +
Sbjct: 600 EASAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQ 659
Query: 140 PPAIPEATEASGPP--SPTPGDKLS-PASELPKESPL 173
PP EA PP P + S PA E P E L
Sbjct: 660 PPPAEEAPAEVQPPPAEEAPAEVQSLPAEETPIEETL 696
Score = 32.7 bits (73), Expect = 0.86
Identities = 68/306 (22%), Positives = 103/306 (33%), Gaps = 55/306 (17%)
Query: 32 PAREAGSAVEAEEL-VKGSPAWEPPANDTREEAGPPAAGE---------------DEASW 75
P EA +AV + V+ PA E P + E PP+A E +E+
Sbjct: 301 PDAEAATAVAENSVKVQPPPAEEAPLVEFPAEIQPPSAEESPSVELLAEILPPSAEESPS 360
Query: 76 TAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLG 135
P E+ P S + G E SP +A+ + Q LPA + E
Sbjct: 361 EEPPAEILPPPAEKSPSVELLG----EIRSP-----SAQKAPIEVQPLPA--EGALEEAP 409
Query: 136 QSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLGGSTPDPQGP------ 189
+ PP + E P P E P+E E+ L+ TP + P
Sbjct: 410 AKVEPPTVEETLADVQPLLP---------EEAPREEARELQLSTAMETPAEEAPTEFQSP 460
Query: 190 --------ELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPDT 241
E + Q +P +D + L E + + SP E T
Sbjct: 461 LPKETTAEEASAEIQLLAATEPPADETPAEARSPLSEETSAEEAHAEVQSPLAEE----T 516
Query: 242 EGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDEN-EL 300
E S + L P DE+ + ++ EE E + G +E+ EL
Sbjct: 517 TAEEASAEIQLLAAIEAPADETPAEAQSPLSEETSAEEAPAEVQSPSAKGVSIEEAPLEL 576
Query: 301 LVPTGK 306
P+G+
Sbjct: 577 QPPSGE 582
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 45.8 bits (107), Expect = 1e-04
Identities = 76/318 (23%), Positives = 95/318 (29%), Gaps = 42/318 (13%)
Query: 64 GPPAAGEDEASWTAPGGELA----GPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGD 119
GP A+ + PGG P +++AAV A P AGS
Sbjct: 396 GPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLP 455
Query: 120 AQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNL 179
+ PA V A A SG P P G + + S L E L+
Sbjct: 456 VPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSR 515
Query: 180 GGSTPDPQGPELTYPFQGTLEPQPA-----------------SDIIDIDYFEGLDGEGRG 222
G D L P P P ++ I Y + G G
Sbjct: 516 GPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAG 575
Query: 223 ADLGSFPGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDF-YPTTSFYDDLDEEEEE 281
G PG+ PD E S S D DE + + F DD D +EE
Sbjct: 576 PARGPGPGAGSGGYVSPDFLSEGSS-SYNSASPDVDTADEPEVDVESNRFPDDEDAQEET 634
Query: 282 EEDDKDAVGGGDLEDENELLVPTGKPGL----------GPGTGQPTSRWHAVPP---QHT 328
E A GG D E PTG P P G P R PP +
Sbjct: 635 EPSAPSAGGGPDGEQ------PTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPA 688
Query: 329 LGSVPGSSIALRPRPGEP 346
G + + RP P
Sbjct: 689 FGDLAAEDLVRRPERSPP 706
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 45.4 bits (106), Expect = 1e-04
Identities = 52/167 (31%), Positives = 65/167 (38%), Gaps = 40/167 (23%)
Query: 4 AGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAW--EPP------ 55
AGGGGP + PPP +V + A PA E EA +G P W PP
Sbjct: 1306 AGGGGPPQAPPP-----REGVVEGAEACPASE-----EALGRERGWPFWMGSPPDSVLAE 1355
Query: 56 ANDTREEAGP---PAAGEDEASWTAPG----GELAGPEEVLQESAAVT--GTAWLEADSP 106
+RE GP PA E+ AS +PG G L G + +E+ + WL D
Sbjct: 1356 LRRSREREGPAASPAENEEGASEPSPGGIKWGHLFGSRKAQREARPTNRLPSDWLSLDKS 1415
Query: 107 GLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPP 153
V GS +LQ PH PA+P S PP
Sbjct: 1416 MFQLVAQTVGSRREPEPKESLQEPHS--------PALP-----SSPP 1449
>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 45.4 bits (106), Expect = 1e-04
Identities = 52/167 (31%), Positives = 65/167 (38%), Gaps = 40/167 (23%)
Query: 4 AGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAW--EPP------ 55
AGGGGP + PPP +V + A PA E EA +G P W PP
Sbjct: 1306 AGGGGPPQAPPP-----REGVVEGAEACPASE-----EALGRERGWPFWMGSPPDSVLAE 1355
Query: 56 ANDTREEAGP---PAAGEDEASWTAPG----GELAGPEEVLQESAAVT--GTAWLEADSP 106
+RE GP PA E+ AS +PG G L G + +E+ + WL D
Sbjct: 1356 LRRSREREGPAASPAENEEGASEPSPGGIKWGHLFGSRKAQREARPTNRLPSDWLSLDKS 1415
Query: 107 GLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPP 153
V GS +LQ PH PA+P S PP
Sbjct: 1416 MFQLVAQTVGSRREPEPKESLQEPHS--------PALP-----SSPP 1449
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 44.7 bits (104), Expect = 2e-04
Identities = 74/330 (22%), Positives = 110/330 (33%), Gaps = 58/330 (17%)
Query: 55 PANDTREEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAE 114
PA + E A PP ++E + ++G EE + E A + E G
Sbjct: 687 PAAASEEAAFPPVVEDEEMEASG----VSGNEEEMVEEAEALHASGNEVPRGECSGPATV 742
Query: 115 AGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKES-PL 173
S D +++P+ + GQ+ P P A GPP PG P ++P + P
Sbjct: 743 NNSSDTESIPSPHTEAAKDTGQN--GPKPPATLGADGPP---PGPPTPPPEDIPAPTEPT 797
Query: 174 EVWLNLGGSTPDPQGPELTYP-------------------FQGTLEPQPASDIIDID--- 211
G TP P P + P +G + PA++ + +D
Sbjct: 798 PASEATGAPTPPPAPPSPSAPPPVVPKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGK 857
Query: 212 ---------YFEGLDGEGRGADLGSFPGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDE 262
E +G +G D + T+E E + +
Sbjct: 858 AEEPVKSECTEEAEEGPAKGKDA---EAAEATAEGALKAEKKEGGSGRATTAKSSGAPQD 914
Query: 263 SDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENELLVPTGKPGLGPGTGQP------ 316
SD T S DE +E E DK+ + L LL PTG P +P
Sbjct: 915 SDSSATCS----ADEVDEAEGGDKNRL----LSPRPSLLTPTGDPRANASPQKPLDLKQL 966
Query: 317 TSRWHAVPPQHTLGSVPGSSIALRPRPGEP 346
R A+PP T P A +P P
Sbjct: 967 KQRAAAIPPIVTKVHEPPREDAAPTKPAPP 996
Score = 30.0 bits (66), Expect = 5.6
Identities = 48/183 (26%), Positives = 67/183 (36%), Gaps = 40/183 (21%)
Query: 28 SGAVPAREAGSAVE---AEEL-VKGSPAWEPPANDTREEAGP-PAAGEDE--ASWTAPGG 80
+ A P E G + AEEL V A EP ++ EEA PA G+D A TA G
Sbjct: 831 TAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKDAEAAEATAEGA 890
Query: 81 ELAGPEEVLQESAAVTGTAWLEADSPGLGGVTA----EAGSGDAQAL------------- 123
A +E A ++ DS +A EA GD L
Sbjct: 891 LKAEKKEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLSPRPSLLTPTGD 950
Query: 124 PATLQAPHEVLG-------QSIMPPAIPEATEAS---------GPPSPTPGDKLSPASEL 167
P +P + L + +PP + + E PP+P P L P S+
Sbjct: 951 PRANASPQKPLDLKQLKQRAAAIPPIVTKVHEPPREDAAPTKPAPPAPPPPQNLQPESDA 1010
Query: 168 PKE 170
P++
Sbjct: 1011 PQQ 1013
Score = 29.6 bits (65), Expect = 7.3
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 297 ENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSI 337
+ E L P G+ G G PT++ +V LGSVPG SI
Sbjct: 1175 KQEQLSPRGQAGPPESLGVPTAQEASVLRGTALGSVPGGSI 1215
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 43.9 bits (102), Expect = 4e-04
Identities = 73/311 (23%), Positives = 113/311 (36%), Gaps = 45/311 (14%)
Query: 28 SGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGEDEASW-TAPGGELAGPE 86
+ AVP E ++ A P A T EE PAA T+P + PE
Sbjct: 1043 AAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPE 1102
Query: 87 EVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIP-- 144
E +AAV E SP T E + A A+P P E + PA+P
Sbjct: 1103 EPTSPAAAVPTPE--EPASPAAAVPTPEEPASPAAAVPT----PEE---PAFPAPAVPTP 1153
Query: 145 EATEASGPPSPTPGDKLSPASELPKESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPA 204
E + ++ PTP + SPA+ +P + + + + +P P + P PA
Sbjct: 1154 EESASAAVAVPTPEESASPAAAVPTPAESASFAAVVATLEEPTSPAASV-------PTPA 1206
Query: 205 SDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESD 264
+ + ++ F P S + ++P+ E +P+ ++ L +
Sbjct: 1207 AMVATLEEF---TSPAASVPTSEEPASLAAAVSNPE-EPTSPAAAVPTLEE--------- 1253
Query: 265 FYPTTSFYDDLDEEE---------EEEEDDKDAVGGGDLED--ENELLVPTGKPGLGPGT 313
PT+S L EE EE A +LE+ VPT + P
Sbjct: 1254 --PTSSAAAVLTPEELSSPAASVPTPEEPASPAAAVSNLEEPASPAAAVPTPEVAAIPAA 1311
Query: 314 GQPTSRWHAVP 324
PT A+P
Sbjct: 1312 SVPTPEVPAIP 1322
Score = 35.0 bits (79), Expect = 0.17
Identities = 51/182 (28%), Positives = 70/182 (38%), Gaps = 28/182 (15%)
Query: 22 AALVLASGAVPAREAGSAVEAEELVKG-SPAWEPPANDT--REEAGPPAAGEDEASWTAP 78
AA+ PA A E V G SP W A EE G P P
Sbjct: 924 AAVSSPEETAPAVAAAITQEGMSAVAGFSPEWAALAITVPITEEDGTPEGP------VTP 977
Query: 79 GGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQSI 138
+ PEE ++AAV + E SP T E + A A+P T + P ++
Sbjct: 978 ATTVHAPEE--PDTAAVRVSTPEEPASPAAAVPTPEEPTSPAAAVP-TPEEPTSPAA-AV 1033
Query: 139 MPP--------AIPEATEASGPPS--PTPGDKLSPASELP-KESPLEVWLNLGGSTPDPQ 187
PP A+P E + P + PTP + SPA+ +P E P + + P P+
Sbjct: 1034 PPPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEP----TSPAAAVPTPE 1089
Query: 188 GP 189
P
Sbjct: 1090 EP 1091
Score = 33.9 bits (76), Expect = 0.39
Identities = 47/181 (25%), Positives = 69/181 (38%), Gaps = 21/181 (11%)
Query: 21 GAALVLASGAVPARE--AGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGEDEASWTAP 78
G A+V A P + S V EE + A P E A PA TA
Sbjct: 868 GTAVVAALVPFPHEDILVASIVSLEEEDVTAAAVSAP-----ERATVPAVTVSVPEGTAA 922
Query: 79 GGELAGPEEVLQE-SAAVT--GTAWLEADSPGLGG------VTAEAGSGDAQALPATLQA 129
++ PEE +AA+T G + + SP +T E G+ + PAT
Sbjct: 923 VAAVSSPEETAPAVAAAITQEGMSAVAGFSPEWAALAITVPITEEDGTPEGPVTPATTVH 982
Query: 130 PHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELP-KESPLEVWLNLGGSTPDPQG 188
E + + + PE + PTP + SPA+ +P E P + + P P+
Sbjct: 983 APEEPDTAAVRVSTPEEPASPAAAVPTPEEPTSPAAAVPTPEEP----TSPAAAVPPPEE 1038
Query: 189 P 189
P
Sbjct: 1039 P 1039
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 43.5 bits (101), Expect = 5e-04
Identities = 59/243 (24%), Positives = 76/243 (31%), Gaps = 20/243 (8%)
Query: 16 LLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGEDEASW 75
LL+ L AL+ S A E S E+ ++ G P P + + PP G+ E
Sbjct: 2 LLILLSVALLALSSAQSLNEDVSQEESPSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRP 61
Query: 76 TAPGGELAG--PEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDAQA-----LPATLQ 128
G + G P E G + P G + G Q+ P +
Sbjct: 62 PQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPE 121
Query: 129 APHEVLG-QSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLGGSTPDPQ 187
P G QS PP P E P P P+ P + G P P
Sbjct: 122 GPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPG 181
Query: 188 GPELTYPFQGTLE----PQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPDTEG 243
PE P G P+P EG +G G P PG E P G
Sbjct: 182 KPEGPPPQGGNQSQGPPPRPGKP-------EGPPPQGGNQSQGP-PPRPGKPEGPPSQGG 233
Query: 244 ETP 246
P
Sbjct: 234 NKP 236
Score = 36.2 bits (82), Expect = 0.078
Identities = 44/199 (22%), Positives = 57/199 (28%), Gaps = 27/199 (13%)
Query: 6 GGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGP 65
GG +GPPP P + G+ + G P PP + + P
Sbjct: 127 GGNQSQGPPPRP---------GKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPP 177
Query: 66 PAAGEDEASWTAPGGELAGP--EEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDAQAL 123
P G+ E G + GP E G + P G G +
Sbjct: 178 PHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQ 237
Query: 124 -----PATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLN 178
P Q P G P P + PP P L P + P+
Sbjct: 238 GPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQ--------- 288
Query: 179 LGGSTPDPQGPELTYPFQG 197
G P PQG P QG
Sbjct: 289 --GPPPPPQGGRPHRPPQG 305
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 43.1 bits (100), Expect = 6e-04
Identities = 81/319 (25%), Positives = 111/319 (34%), Gaps = 52/319 (16%)
Query: 55 PANDTREEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAE 114
PA + E A PP ++E + G EE+++E+ A + +D+ + E
Sbjct: 687 PAAASEEAAFPPVVEDEEMEASGVSGN---EEEMVEEAEATVNNS---SDTESIPSPHTE 740
Query: 115 AGSGDAQ---ALPATLQAPHEVLGQSIMPPA-IP---------EATEASGPPSPTPGDKL 161
A Q PATL A G PP IP EAT A PP P P
Sbjct: 741 AAKDTGQNGPKPPATLGADGPPPGPPTPPPEDIPAPTEPTPASEATGAPTPP-PAPPSPS 799
Query: 162 SPASELPKESPLEVWLNLGGSTPDPQGPELTYPF-------QGTLEPQPASDIIDIDYFE 214
+P +PKE E + P +G E P G E S+ + E
Sbjct: 800 APPPVVPKEEKEE---ETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTE----E 852
Query: 215 GLDGEGRGADLGSFPGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDD 274
+G +G D + T+E E + +SD T S
Sbjct: 853 AEEGPAKGKDA---EAAEATAEGALKAEKKEGGSGRATTAKSSGAPQDSDSSATCS---- 905
Query: 275 LDEEEEEEEDDKDAVGGGDLEDENELLVPTGKPGLGPGTGQP------TSRWHAVPP-QH 327
DE +E E DK+ + L LL PTG P +P R A+PP Q
Sbjct: 906 ADEVDEAEGGDKNRL----LSPRPSLLTPTGDPRANASPQKPLDLKQLKQRAAAIPPIQV 961
Query: 328 TLGSVPGSSIALRPRPGEP 346
T P A +P P
Sbjct: 962 TKVHEPPREDAAPTKPAPP 980
Score = 29.6 bits (65), Expect = 7.3
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 297 ENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSI 337
+ E L P G+ G G PT++ +V LGSVPG SI
Sbjct: 1159 KQEQLSPRGQAGPPESLGVPTAQEASVLRGTALGSVPGGSI 1199
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 42.7 bits (99), Expect = 8e-04
Identities = 49/164 (29%), Positives = 62/164 (37%), Gaps = 31/164 (18%)
Query: 37 GSAVEAEELVKGSPAWEPPANDTREEAGPPAAG-----EDEASWTAPGGELAGPEEVLQE 91
GS E PA + PA E GP AG E+ PG AGP
Sbjct: 516 GSPSETPGPSPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGP------ 569
Query: 92 SAAVTGTAWLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASG 151
A A +++PG + +G + PA ++P E G PA P E +
Sbjct: 570 --AGDEPAESPSETPG------PSPAGPTRDEPA--ESPSETPGPR---PAGPAGDEPAE 616
Query: 152 PPSPTPGDK-LSPASELPKESPLEVWLNLGGSTPDPQGPELTYP 194
PS TPG + PA + P ESP E P P GP P
Sbjct: 617 SPSETPGPRPAGPAGDEPAESPSET------PGPSPAGPTRDEP 654
>gi|153070262 meprin A alpha [Homo sapiens]
Length = 746
Score = 42.7 bits (99), Expect = 8e-04
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 344 GEPGRDLASSENGTECRSGFVRHNGS--CRSVCDLFPSYCHNGGQCYLVENIGAFCRCNT 401
G+P R S EN HN R CD P+ C N G C V+ + A CRC +
Sbjct: 646 GQPSRQKRSVENTGPLED----HNWPQYFRDPCD--PNPCQNDGICVNVKGM-ASCRCIS 698
Query: 402 QDYIWHKGMRCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKK 446
++ G RC+++ V+ + +G A V+ L F + +++
Sbjct: 699 GHAFFYTGERCQAVQVHGSVLGMVIGGTAGVIFLTFSIIAILSQR 743
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 42.7 bits (99), Expect = 8e-04
Identities = 74/285 (25%), Positives = 96/285 (33%), Gaps = 57/285 (20%)
Query: 3 RAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREE 62
R G PPP G +V+A G + V + PAW P + +T
Sbjct: 13 RRHGAPAAPSPPPRGSRAGPVVVVAPGPPVTTATSAPVTLVAPGEARPAWVPGSAETSAP 72
Query: 63 AGPPAAGED-------------EASWTAPGGEL-AGPEEVLQESAAVTGTAWLEADSPGL 108
A PA EAS AP +L +GPE E AAV G A + G
Sbjct: 73 APAPAPAPAPAVTGSTVVVLTLEASPEAPKPQLPSGPES--PEPAAVAGVETSRALAAGA 130
Query: 109 GGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPA--IPEATEASGPPSPTPGDKLSPASE 166
E +A P+ P G P+ P A A P +P PG ++
Sbjct: 131 DSPKTE------EARPSPAPGPGTPTGTPTRTPSRTAPGALTAKPPLAPKPGTTVASGVT 184
Query: 167 LPKES---------PLEVWLNLGGSTPDPQGPELTYPFQGTLE-----------PQPASD 206
S + G + DP GP T P GT E P+PA +
Sbjct: 185 ARSASGQVTGGHGAAAATSASAGQAPEDPSGPG-TGP-SGTCEAPVAVVTVTPAPEPAEN 242
Query: 207 IIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPDTEGETPSWSLL 251
D+ G + LG PG G PDT S SL+
Sbjct: 243 SQDL---------GSTSSLG--PGISGPRGQAPDTLSYLDSVSLM 276
>gi|62988361 absent in melanoma 1 [Homo sapiens]
Length = 1723
Score = 42.7 bits (99), Expect = 8e-04
Identities = 59/225 (26%), Positives = 87/225 (38%), Gaps = 34/225 (15%)
Query: 27 ASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGEDEASWTAPGGELAGPE 86
+SG R GS + G+ A E P + R++A +DE + A + +
Sbjct: 5 SSGRRSGRRRGSQKSTDS--PGADA-ELPESAARDDA----VFDDEVAPNAASDNASAEK 57
Query: 87 EVLQESAAVTGTAWLEAD-----SPGLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPP 141
+V AA+ G A SPG G G D P +P + G+S
Sbjct: 58 KVKSPRAALDGGVASAASPESKPSPGTKGQLR--GESDRSKQPPPASSPTKRKGRSRALE 115
Query: 142 AIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLGGSTPDPQGPELTYPFQGTLEP 201
A+P A ASGP +P K SP +P SP+ T G E L
Sbjct: 116 AVP-APPASGPRAPA---KESPPKRVPDPSPVTK------GTAAESGEEAARAIPRELPV 165
Query: 202 QPASDIIDI----------DYFEGLDGEGRGADLGSFPGSPGTSE 236
+ +S + +I ++F G GR +LG G+PG S+
Sbjct: 166 KSSSLLPEIKPEHKRGPLPNHFNGRAEGGRSRELGRAAGAPGASD 210
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 42.7 bits (99), Expect = 8e-04
Identities = 84/323 (26%), Positives = 114/323 (35%), Gaps = 58/323 (17%)
Query: 30 AVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAG------EDEASWTAPGGELA 83
A P E A EAE + + E P +T EA P + G E EA + G E
Sbjct: 2094 AQPESEGVEAPEAEGEAQKAEGIEAP--ETEGEAQPESEGIEAPEAEGEAQPESEGVEAQ 2151
Query: 84 GPE-EVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPA 142
E E ES + E P L GV A G+AQ ++AP E G++
Sbjct: 2152 DAEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGEAQPESEGIEAP-EAEGEAQPELE 2210
Query: 143 IPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQ 202
EA EA P P +P +E G + P+ +G QG +
Sbjct: 2211 GVEAPEAEEEAQPEPEGVETPEAE-------------GEAQPESEGET-----QGEKKGS 2252
Query: 203 PASDIIDIDYFEGLDGEGR-GADLGSFPGSPGTSENHPDTEGET-PSWSLLD-------- 252
P + D E + D + P SPG H +T PS S
Sbjct: 2253 PQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSSSRASSWGNCWQK 2312
Query: 253 -------LYDDFTPFDESDFYP-----TTSFYDDLDEEEEEE------EDDKDAVGGGDL 294
L D +P +S P T Y + E+EE ++ A G DL
Sbjct: 2313 DSENDHVLGDTRSPDAKSTGTPHAERKATRMYPESSTSEQEEAPLGSRTPEQGASEGYDL 2372
Query: 295 EDENEL--LVPTGKPGLGPGTGQ 315
+++ L L PT G G GQ
Sbjct: 2373 QEDQALGSLAPTEAVGRADGFGQ 2395
Score = 38.5 bits (88), Expect = 0.016
Identities = 81/338 (23%), Positives = 114/338 (33%), Gaps = 47/338 (13%)
Query: 41 EAEELVKGSPAWEPPANDTREEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAW 100
E E + P A +EA A E + P E +EV E+ G A
Sbjct: 1990 EGEAQPESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQ 2049
Query: 101 LEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDK 160
E+D GV A +AQ +Q E G++ +A EA G P
Sbjct: 2050 PESD-----GVEAPEAEEEAQEAEGEVQ---EAEGEAHPESEDVDAQEAEGEAQPESEGV 2101
Query: 161 LSPAS--ELPKESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEG--- 215
+P + E K +E G + P+ +G E + E QP S+ ++ EG
Sbjct: 2102 EAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAP---EAEGEAQPESEGVEAQDAEGEAQ 2158
Query: 216 LDGEGRGADLGSFPGSPG-TSENHPDTEGET-PSWSLLDLYDDFTPFDESDFYPTTSFYD 273
+ EG A P P+ EGE P ++ P E + P +
Sbjct: 2159 PESEGIEAQEAEEEAQPELEGVEAPEAEGEAQPESEGIE-----APEAEGEAQPELEGVE 2213
Query: 274 DLDEEEEEEEDDK-----DAVGGGDLEDENELL-VPTGKPGLGPGTGQ---------PTS 318
+ EEE + + + +A G E E E G P + G GQ P
Sbjct: 2214 APEAEEEAQPEPEGVETPEAEGEAQPESEGETQGEKKGSPQVSLGDGQSEEASESSSPVP 2273
Query: 319 RWHAVPPQHTLGSVPGSSIALRPRPGE---PGRDLASS 353
PP G P RPG P ASS
Sbjct: 2274 EDRPTPPPSPGGDTP------HQRPGSQTGPSSSRASS 2305
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 42.7 bits (99), Expect = 8e-04
Identities = 46/173 (26%), Positives = 64/173 (36%), Gaps = 26/173 (15%)
Query: 16 LLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEA---------GPP 66
LL+ L AL+ S A E S E+ L+ G+P P + + GPP
Sbjct: 2 LLILLSVALLALSSAQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPP 61
Query: 67 AAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLG----GVTAEAG--SGDA 120
G ++ P G+ GP +S + P G G A+ G S A
Sbjct: 62 PQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGSKSQSA 121
Query: 121 QALPATLQAPHEVLG---QSIMPPA--------IPEATEASGPPSPTPGDKLS 162
++ P Q P + G Q PPA P A + GPP P G + S
Sbjct: 122 RSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPS 174
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 42.4 bits (98), Expect = 0.001
Identities = 50/183 (27%), Positives = 64/183 (34%), Gaps = 16/183 (8%)
Query: 27 ASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGEDEASWTAPGGELAGPE 86
A GA+P R+A + P + PA+ P AG ++ W A GE P
Sbjct: 1586 AQGALPERDASRGGLVGQAPMPVPEEKEPASSPWASGEKPPAGSEQDGWKAEPGEGTRPA 1645
Query: 87 EVLQESAAVTGTAWLEADSPGL---GGVTAEAGSGDAQALPATLQAPHEVLG--QSIMPP 141
V SA L G G G D P + + LG Q P
Sbjct: 1646 TVGDSSARPARRVLLPTPPCGALQPGFPLQHDGERDPFTCPG-FASQDKALGSAQYEDPR 1704
Query: 142 AIPEATEASGPPSPTPGDKLSPASELPKESPL-EVWLNLGGSTPDPQGPELTYPFQGTLE 200
+ A +S P T GD+ A +PL +GGS P PFQG E
Sbjct: 1705 NLHSAGRSSSPAGETEGDREPQARPGEGTAPLPPPGQKVGGSQP---------PFQGQRE 1755
Query: 201 PQP 203
P P
Sbjct: 1756 PGP 1758
Score = 30.8 bits (68), Expect = 3.3
Identities = 44/178 (24%), Positives = 60/178 (33%), Gaps = 28/178 (15%)
Query: 119 DAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLN 178
D A P P S P +A ++ PP P P LP+ L+V +
Sbjct: 1224 DVPAYPKVATVPQSEKKPSKYPLCSADAAVSTTPPGSPP-----PPPPLPEPPVLKVLSS 1278
Query: 179 LGGSTPDPQGPELTYPFQGTLEPQPASDIIDI-----DYFEGLDGEGRGADLGSF--PGS 231
L + P P T T AS + L G+ + D + PGS
Sbjct: 1279 LKPAAPSPATAATTAAAASTAASSTASSASKTASPLEHILQTLFGKKKSFDPSAREPPGS 1338
Query: 232 PGTSENHPDTEGE--TPSWSLLD-LYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDK 286
P T E P+ LLD + F F + D+ EEEEDD+
Sbjct: 1339 TAGLPQEPKTTAEDGVPAPPLLDPIVQQFGQFSK-------------DKALEEEEDDR 1383
>gi|156142199 euchromatic histone-lysine N-methyltransferase 2
isoform b [Homo sapiens]
Length = 1176
Score = 40.8 bits (94), Expect = 0.003
Identities = 101/431 (23%), Positives = 151/431 (35%), Gaps = 64/431 (14%)
Query: 22 AALVLASGAVPAREAGSAVEAE-----ELVKGSPAWEPPANDTREEAGP----PAAGEDE 72
AA A G PA +E E E V GS P + +T +A P PA
Sbjct: 8 AAAAAAEGEAPAEMGALLLEKETRGATERVHGSLGDTPRSEETLPKATPDSLEPAGPSSP 67
Query: 73 ASWTAPGGE------LAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDAQALPAT 126
AS T G+ + + ES + G L LG T S ++
Sbjct: 68 ASVTVTVGDEGADTPVGATPLIGDESENLEGDGDLRGGRILLGHATKSFPSSPSKGGSCP 127
Query: 127 LQAPHEVLGQSIMPPAI----------PEATEASGPPSPTPGDKLSPASELPKESPLEVW 176
+A + G PP++ P A A+ S P SP + PK
Sbjct: 128 SRAKMSMTGAGKSPPSVQSLAMRLLSMPGAQGAAAAGSEPPPATTSPEGQ-PKVHRARKT 186
Query: 177 LNLGGS----TPDPQGPELTYPFQGTLEPQPASDII-DIDYFEGLD-GEGRGADLGSF-- 228
++ G+ P+ + PE+ + F+ + + + D+ L+ G G +LGS
Sbjct: 187 MSKPGNGQPPVPEKRPPEIQH-FRMSDDVHSLGKVTSDLAKRRKLNSGGGLSEELGSARR 245
Query: 229 -------PGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDE-------SDFYPTTSFYDD 274
G PG+ E E ET LY D DE S+ T +
Sbjct: 246 SGEVTLTKGDPGSLE-----EWETVVGDDFSLYYDSYSVDERVDSDSKSEVEALTEQLSE 300
Query: 275 LDEEEEEEEDDKDAVGGGDLEDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPG 334
+EEEEEEE++++ + E+E+E G + +W P P
Sbjct: 301 EEEEEEEEEEEEEEEEEEEEEEEDEESGNQSDRSGSSGRRKAKKKWRKDSP----WVKPS 356
Query: 335 SSIALR--PRPGEPGRDLASSENGTECRSGFVR-HNGSCRSVCDLFPSYCHNGG-QCYLV 390
R PR EP R +++ + E GF SCR G +C
Sbjct: 357 RKRRKREPPRAKEP-RGVSNDTSSLETERGFEELPLCSCRMEAPKIDRISERAGHKCMAT 415
Query: 391 ENI-GAFCRCN 400
E++ G CN
Sbjct: 416 ESVDGELSGCN 426
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 40.8 bits (94), Expect = 0.003
Identities = 72/273 (26%), Positives = 92/273 (33%), Gaps = 60/273 (21%)
Query: 2 GRAGGGGPGR--------GPPPL----LLFLGAALVLASGAVPAREAGSAVEAEELVKGS 49
G GGGGPG GPPP LL+ G + + + +A + L G
Sbjct: 14 GGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQA---LAPAPLPAGL 70
Query: 50 PAWEPPANDTREEAGPPAAGEDEA------------SWTAPGGELAGPEEVLQESAAVTG 97
P P A+ AG +A S+ P GP+E+ +AA
Sbjct: 71 PPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQELAAAAAAAAA 130
Query: 98 TAWLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTP 157
TA ++P GG E G + LPA + PP P + P P
Sbjct: 131 TA--ARNNPEPGGRRPEGGLEADELLPAREKVAEP-------PPPPPPHFSETFPSLPAE 181
Query: 158 GDKLSPASELPKESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLD 217
G S E L S DP G E E + + + D F
Sbjct: 182 GKVYSSDEE-----------KLEASAGDPAGSE--------QEEEGSGGDSEDDGFLDSS 222
Query: 218 GEGRGADLGSFP---GSPGT--SENHPDTEGET 245
G GA LG P GS GT E P T G T
Sbjct: 223 AGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVT 255
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 40.8 bits (94), Expect = 0.003
Identities = 38/137 (27%), Positives = 53/137 (38%), Gaps = 9/137 (6%)
Query: 36 AGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAV 95
AG +VEAE V S E PA D+ + GP D P G+ E + +S
Sbjct: 176 AGDSVEAEGRVGDSVDAEGPAGDSVDAEGPLG---DNIQAEGPAGDSVDAEGRVGDSVDA 232
Query: 96 TGTAWLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIP------EATEA 149
G A D+ G G + EAG + A + A V + ++ A
Sbjct: 233 EGPAGDSVDAEGRVGDSVEAGDPAGDGVEAGVPAGDSVEAEGPAGDSMDAEGPAGRARRV 292
Query: 150 SGPPSPTPGDKLSPASE 166
SG P + LSP +E
Sbjct: 293 SGEPQQSGDGSLSPQAE 309
Score = 40.0 bits (92), Expect = 0.005
Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 8/139 (5%)
Query: 36 AGSAVEAEELVKGSPAWEPPANDTREEAGPPA-AGEDEASWTAPGGELAGPEEVLQESAA 94
AG +VEAE S E PA R +G P +G+ S A E+A E +
Sbjct: 266 AGDSVEAEGPAGDSMDAEGPAGRARRVSGEPQQSGDGSLSPQAEAIEVAAGESAGRSPGE 325
Query: 95 VTGTAWLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQS-IMPPAIPEATEASGPP 153
+ A EA+ PG+ G + EA GDA+A A + +G P E P
Sbjct: 326 LAWDAAEEAEVPGVKG-SEEAAPGDARA-----DAGEDRVGDGPQQEPGEDEERRERSPE 379
Query: 154 SPTPGDKLSPASELPKESP 172
P + E P SP
Sbjct: 380 GPREEEAAGGEEESPDSSP 398
Score = 37.7 bits (86), Expect = 0.027
Identities = 67/258 (25%), Positives = 89/258 (34%), Gaps = 76/258 (29%)
Query: 4 AGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEA 63
AGGGGP RGP E A TR
Sbjct: 60 AGGGGPDRGP---------------------------------------EAEARGTR--- 77
Query: 64 GPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDAQAL 123
A GE EA AP G EV Q +G +E SPG G G+AQ
Sbjct: 78 --GAHGETEAEEGAPEG-----AEVPQGGEETSGAQQVEGASPGRG--AQGEPRGEAQRE 128
Query: 124 PATLQAPHEVLGQSIMPPAIPE---------ATEASGPPSPTPGDKLSPASELPKESPLE 174
P AP E ++ P +PE + +A GP GD + +E P +E
Sbjct: 129 PEDSAAP-ERQEEAEQRPEVPEGSASGEAGDSVDAEGP----LGDNIE--AEGPAGDSVE 181
Query: 175 VWLNLGGSTPDPQGP-----ELTYPFQGTLEPQ-PASDIIDID--YFEGLDGEGRGADLG 226
+G S D +GP + P ++ + PA D +D + + +D EG D
Sbjct: 182 AEGRVGDSV-DAEGPAGDSVDAEGPLGDNIQAEGPAGDSVDAEGRVGDSVDAEGPAGDSV 240
Query: 227 SFPGSPGTSENHPDTEGE 244
G G S D G+
Sbjct: 241 DAEGRVGDSVEAGDPAGD 258
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 40.4 bits (93), Expect = 0.004
Identities = 75/288 (26%), Positives = 102/288 (35%), Gaps = 45/288 (15%)
Query: 37 GSAVEAEELV-KGSPAWEPPANDTREEAGPPAAGEDEA---------SWTAPGGELAGPE 86
G E EL K WEPP E G +EA AP G E
Sbjct: 1149 GLGTEFSELPGKSRDPWEPPREGREESEAEAPRGAEEAFPAETLGHTGSDAPSPWPLGSE 1208
Query: 87 EVLQE------SAAVTGTAWLEADSPG-----LGGVTAEAG-SGDAQALPATLQAPHEVL 134
E ++ S + T T LE D+PG G A G G A+AL +++ E L
Sbjct: 1209 EAEEDVPPVLVSPSPTYTPILE-DAPGPQPQAEGSQEASWGVQGRAEAL-GKVESEQEEL 1266
Query: 135 GQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLN---------LGGSTPD 185
G IPE + G S ++ LP +PL +L G P
Sbjct: 1267 GSG----EIPEGPQEEGEESREESEEDELGETLPDSTPLGFYLRSPTSPRWDPTGEQRPP 1322
Query: 186 PQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGE---GRGADLGSFPGSPGTSENH-PDT 241
PQG + + + + EG +GE GR +DL GT P
Sbjct: 1323 PQGETGKEGWDPAVLASEGLEAPPSEKEEGEEGEEECGRDSDLSEEFEDLGTEAPFLPGV 1382
Query: 242 EGET--PSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKD 287
GE P + L D +D + F D+ + EE EED ++
Sbjct: 1383 PGEVAEPLGQVPQLLLDPAAWDRDG--ESDGFADEEESGEEGEEDQEE 1428
>gi|156142197 euchromatic histone-lysine N-methyltransferase 2
isoform a [Homo sapiens]
Length = 1210
Score = 40.4 bits (93), Expect = 0.004
Identities = 79/325 (24%), Positives = 120/325 (36%), Gaps = 54/325 (16%)
Query: 22 AALVLASGAVPAREAGSAVEAE-----ELVKGSPAWEPPANDTREEAGP----PAAGEDE 72
AA A G PA +E E E V GS P + +T +A P PA
Sbjct: 8 AAAAAAEGEAPAEMGALLLEKETRGATERVHGSLGDTPRSEETLPKATPDSLEPAGPSSP 67
Query: 73 ASWTAPGGE------LAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDAQALPAT 126
AS T G+ + + ES + G L LG T S ++
Sbjct: 68 ASVTVTVGDEGADTPVGATPLIGDESENLEGDGDLRGGRILLGHATKSFPSSPSKGGSCP 127
Query: 127 LQAPHEVLGQSIMPPAI----------PEATEASGPPSPTPGDKLSPASELPKESPLEVW 176
+A + G PP++ P A A+ S P SP + PK
Sbjct: 128 SRAKMSMTGAGKSPPSVQSLAMRLLSMPGAQGAAAAGSEPPPATTSPEGQ-PKVHRARKT 186
Query: 177 LNLGGS----TPDPQGPELTYPFQGTLEPQPASDII-DIDYFEGLD-GEGRGADLGSF-- 228
++ G+ P+ + PE+ + F+ + + + D+ L+ G G +LGS
Sbjct: 187 MSKPGNGQPPVPEKRPPEIQH-FRMSDDVHSLGKVTSDLAKRRKLNSGGGLSEELGSARR 245
Query: 229 -------PGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDE-------SDFYPTTSFYDD 274
G PG+ E E ET LY D DE S+ T +
Sbjct: 246 SGEVTLTKGDPGSLE-----EWETVVGDDFSLYYDSYSVDERVDSDSKSEVEALTEQLSE 300
Query: 275 LDEEEEEEEDDKDAVGGGDLEDENE 299
+EEEEEEE++++ + E+E+E
Sbjct: 301 EEEEEEEEEEEEEEEEEEEEEEEDE 325
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 40.4 bits (93), Expect = 0.004
Identities = 74/307 (24%), Positives = 104/307 (33%), Gaps = 54/307 (17%)
Query: 93 AAVTGTAWLEADSPGLGGVTAEA-------GSGDAQAL--------PATLQAPHEVLGQS 137
A ++W E +P G+ A+ G D+Q L P+T P G S
Sbjct: 18 ATAHNSSWGEMQAPNAPGLPADVPGSDVPQGPSDSQILQGLCASEGPSTSVLPTSAEGPS 77
Query: 138 -IMPPAIPEATEASGPPS----------PTPGDKLSPASELPKESPLEVWLNLGGSTPDP 186
+PP I EA+ ASG P+ PTP + LS + L + L S
Sbjct: 78 TFVPPTISEASSASGQPTISEGPGTSVLPTPSEGLSTSGPPTISKGLCTSVTLAAS---- 133
Query: 187 QGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPDTEGETP 246
+G + P + EP + E L PG GTS + P T E P
Sbjct: 134 EGRNTSRPPTSSEEPSTS--------VPPTASEVPSTSLPPTPGE-GTSTSVPPTAYEGP 184
Query: 247 SWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENELLVPTGK 306
S S++ D+ + PT E +V E + + PT
Sbjct: 185 STSVVPTPDE---GPSTSVLPTPGEGPGTSVPLAATEGLSTSVQATPDEGPSTSVPPTAT 241
Query: 307 PGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECRSGFVRH 366
GL VPP G P +S+ P G L ++ +G R
Sbjct: 242 EGLST----------PVPPTRDEG--PSTSVPATPGEGPSTSVLPAASDGQSISLVPTRG 289
Query: 367 NGSCRSV 373
GS SV
Sbjct: 290 KGSSTSV 296
Score = 33.5 bits (75), Expect = 0.51
Identities = 47/206 (22%), Positives = 65/206 (31%), Gaps = 10/206 (4%)
Query: 9 PGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAA 68
PG GP + + S E S +G PP D PA
Sbjct: 204 PGEGPGTSVPLAATEGLSTSVQATPDEGPSTSVPPTATEGLSTPVPPTRDEGPSTSVPAT 263
Query: 69 -GEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLG-GVTAEAGSGDAQALPAT 126
GE ++ P ++ + T+ + GL V AG G + ++P T
Sbjct: 264 PGEGPSTSVLPAASDGQSISLVPTRGKGSSTSVPPTATEGLSTSVQPTAGEGSSTSVPPT 323
Query: 127 LQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLS----PASELPKESPLEVWLNLGGS 182
P L S+ PP E S PP+P G S P L P S
Sbjct: 324 ---PGGGLSTSV-PPTATEELSTSVPPTPGEGPSTSVLPIPGEGLSTSVPPTASDGSDTS 379
Query: 183 TPDPQGPELTYPFQGTLEPQPASDII 208
P G + Q T P S ++
Sbjct: 380 VPPTPGEGASTLVQPTAPDGPGSSVL 405
>gi|119220603 ring finger protein 208 [Homo sapiens]
Length = 261
Score = 40.0 bits (92), Expect = 0.005
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 114 EAGSGDAQALPATLQAPHEVLGQSIM----PPAIPEATEASG-PPSPTPGDKLSPASELP 168
EAGSG L + L+ PH +L M P PE A PP+P P L+P P
Sbjct: 8 EAGSGWPGLLMSCLKGPHVILKMEAMKIVHPEKFPELPAAPCFPPAPRPTPTLAPKRAWP 67
Query: 169 KESPLEVWLNLGGSTPDPQGPELTYP 194
++ + V GG P +G T P
Sbjct: 68 SDTEIIVNQACGGDMPALEGAPHTPP 93
>gi|169217681 PREDICTED: similar to hCG1747328, partial [Homo
sapiens]
Length = 245
Score = 39.7 bits (91), Expect = 0.007
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 381 CHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCE-SIITDFQVMCVAVGSAALVLLLL 436
CH G QC L E G CRC + D W G RCE ++ V + G+A LVLLLL
Sbjct: 111 CHQG-QCVL-ETSGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLL 165
>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
sapiens]
Length = 321
Score = 39.7 bits (91), Expect = 0.007
Identities = 40/168 (23%), Positives = 56/168 (33%), Gaps = 8/168 (4%)
Query: 4 AGGG---GPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAW-----EPP 55
AGGG PG+GP + L LG ++ +P + A A +G P
Sbjct: 94 AGGGFACNPGKGPAAVRLALGGGWKISKSPIPVQMAAGAAGCRTQARGQRLTSRGRESPE 153
Query: 56 ANDTREEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEA 115
A E G P + S T GE + + + L A S L G A
Sbjct: 154 ATGVPERRGDPETRRNRKSLTPGSGEFGVRSQSCDSTVPESLERALWAQSSQLAGGPGLA 213
Query: 116 GSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSP 163
A + AP G +P A A+ P+ G+ P
Sbjct: 214 PRPGASGRGRWVSAPLPPKGTETFFCVLPSALRAALSCGPSWGEDSGP 261
>gi|239749213 PREDICTED: mucin 3B, cell surface associated, partial
[Homo sapiens]
Length = 1063
Score = 39.7 bits (91), Expect = 0.007
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 381 CHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCE-SIITDFQVMCVAVGSAALVLLLL 436
CH G QC L E G CRC + D W G RCE ++ V + G+A LVLLLL
Sbjct: 929 CHQG-QCVL-ETSGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLL 983
>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
sapiens]
Length = 321
Score = 39.7 bits (91), Expect = 0.007
Identities = 40/168 (23%), Positives = 56/168 (33%), Gaps = 8/168 (4%)
Query: 4 AGGG---GPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAW-----EPP 55
AGGG PG+GP + L LG ++ +P + A A +G P
Sbjct: 94 AGGGFACNPGKGPAAVRLALGGGWKISKSPIPVQMAAGAAGCRTQARGQRLTSRGRESPE 153
Query: 56 ANDTREEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEA 115
A E G P + S T GE + + + L A S L G A
Sbjct: 154 ATGVPERRGDPETRRNRKSLTPGSGEFGVRSQSCDSTVPESLERALWAQSSQLAGGPGLA 213
Query: 116 GSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSP 163
A + AP G +P A A+ P+ G+ P
Sbjct: 214 PRPGASGRGRWVSAPLPPKGTETFFCVLPSALRAALSCGPSWGEDSGP 261
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,761,526
Number of Sequences: 37866
Number of extensions: 1828157
Number of successful extensions: 13473
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 622
Number of HSP's that attempted gapping in prelim test: 11003
Number of HSP's gapped (non-prelim): 2400
length of query: 539
length of database: 18,247,518
effective HSP length: 107
effective length of query: 432
effective length of database: 14,195,856
effective search space: 6132609792
effective search space used: 6132609792
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.