Guide to the Human Genome
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Name: CTNNA2 Sequence: fasta or formatted (905aa) NCBI GI: 55770846
Description:

catenin, alpha 2

Referenced in:

Cadherins and Related Proteins
Gene Structure

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0        109           3
 C cysteine            1.3         12           1
 D aspartate           6.4         58           2
 E glutamate           8.7         79           2
 F phenylalanine       2.4         22           1
 G glycine             3.5         32           2
 H histidine           1.3         12           1
 I isoleucine          5.2         47           2
 K lysine              7.6         69           3
 L leucine             8.7         79           2
 M methionine          3.1         28           2
 N asparagine          4.2         38           2
 P proline             2.9         26           1
 Q glutamine           5.0         45           2
 R arginine            6.1         55           2
 S serine              6.4         58           2
 T threonine           5.0         45           2
 V valine              8.1         73           2
 W tryptophan          0.4          4           1
 Y tyrosine            1.5         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   catenin, alpha 2 
CTNNA1                0.823   catenin, alpha 1 
CTNNA3                0.615   catenin, alpha 3 
CTNNA3                0.615   catenin, alpha 3 
CTNNAL1               0.103   catenin, alpha-like 1 
VCL                   0.097   vinculin isoform VCL 
VCL                   0.064   vinculin isoform meta-VCL 
NUMA1                 0.013   nuclear mitotic apparatus protein 1 
KTN1                  0.012   kinectin 1 isoform b 
GOLGB1                0.011   golgi autoantigen, golgin subfamily b, macrogolgin ...
KTN1                  0.011   kinectin 1 isoform a 
KTN1                  0.011   kinectin 1 isoform c 
KTN1                  0.011   kinectin 1 isoform a 
DSP                   0.011   desmoplakin isoform I 
MYH3                  0.011   myosin, heavy chain 3, skeletal muscle, embryonic [H...
C14orf38              0.009   PREDICTED: hypothetical protein 
C14orf38              0.009   PREDICTED: hypothetical protein 
C14orf38              0.009   PREDICTED: hypothetical protein 
MYH9                  0.009   myosin, heavy polypeptide 9, non-muscle 
MYH15                 0.009   myosin, heavy polypeptide 15 
LAMA4                 0.009   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.009   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.009   laminin, alpha 4 isoform 2 precursor 
TLN1                  0.008   talin 1 
CENPE                 0.007   centromere protein E 
DST                   0.007   dystonin isoform 1e precursor 
CEP152                0.006   centrosomal protein 152kDa 
RABEP1                0.006   rabaptin, RAB GTPase binding effector protein 1 iso...
RABEP1                0.006   rabaptin, RAB GTPase binding effector protein 1 isof...
CCDC88A               0.006   coiled-coil domain containing 88A isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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