Guide to the Human Genome
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Name: VASH1 Sequence: fasta or formatted (365aa) NCBI GI: 7662454
Description:

vasohibin 1

Referenced in:

Cardiovascular System

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         23           3
 C cysteine            0.5          2           1
 D aspartate           4.9         18           2
 E glutamate           8.2         30           3
 F phenylalanine       3.6         13           2
 G glycine             8.5         31           3
 H histidine           2.7         10           1
 I isoleucine          3.8         14           1
 K lysine              7.1         26           2
 L leucine             7.4         27           1
 M methionine          2.5          9           1
 N asparagine          1.9          7           1
 P proline             7.9         29           2
 Q glutamine           3.0         11           1
 R arginine            9.0         33           2
 S serine              7.4         27           2
 T threonine           5.5         20           1
 V valine              6.0         22           1
 W tryptophan          1.1          4           1
 Y tyrosine            2.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vasohibin 1 
VASH2                 0.430   vasohibin 2 isoform 2 
VASH2                 0.380   vasohibin 2 isoform 3 
VASH2                 0.341   vasohibin 2 isoform 1 
USP1                  0.017   ubiquitin specific protease 1 
USP1                  0.017   ubiquitin specific protease 1 
USP1                  0.017   ubiquitin specific protease 1 
TRIM33                0.015   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.015   tripartite motif-containing 33 protein isoform alpha...
ZNF335                0.011   zinc finger protein 335 
KCNH2                 0.011   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.011   voltage-gated potassium channel, subfamily H, member ...
DOCK8                 0.010   dedicator of cytokinesis 8 
BNIPL                 0.010   BCL2/adenovirus E1B 19kD interacting protein like i...
BNIPL                 0.010   BCL2/adenovirus E1B 19kD interacting protein like i...
LOC648822             0.010   PREDICTED: similar to hCG2040565 
LOC648822             0.010   PREDICTED: similar to hCG2040565 
LOC648822             0.010   PREDICTED: similar to hCG2040565 
FKBP8                 0.010   FK506-binding protein 8 
TBC1D16               0.010   TBC1 domain family, member 16 
BSN                   0.008   bassoon protein 
CASZ1                 0.008   castor homolog 1, zinc finger isoform a 
NDEL1                 0.008   nudE nuclear distribution gene E homolog (A. nidulan...
NDEL1                 0.008   nudE nuclear distribution gene E homolog (A. nidulan...
KIF21A                0.008   kinesin family member 21A 
TMEM119               0.008   transmembrane protein 119 
HNRNPUL2              0.008   heterogeneous nuclear ribonucleoprotein U-like 2 [H...
HDGF2                 0.008   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.008   hepatoma-derived growth factor-related protein 2 iso...
CENPB                 0.008   centromere protein B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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