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Search of human proteins with 7661832
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7661832 Ssu72 RNA polymerase II CTD phosphatase homolog
[Homo sapiens]
(194 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7661832 Ssu72 RNA polymerase II CTD phosphatase homolog [Homo... 405 e-113
gi|169217206 PREDICTED: similar to Ssu72 RNA polymerase II CTD p... 332 2e-91
gi|89060983 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... 332 2e-91
gi|27486601 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... 332 2e-91
gi|157384994 hypothetical protein LOC136157 [Homo sapiens] 289 1e-78
gi|21735598 programmed cell death 4 isoform 2 [Homo sapiens] 37 0.011
gi|21735596 programmed cell death 4 isoform 1 [Homo sapiens] 37 0.011
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 31 0.76
gi|169218111 PREDICTED: similar to pyruvate kinase, muscle [Homo... 30 1.3
gi|154091312 transient receptor potential cation channel, subfam... 30 1.3
gi|154091308 transient receptor potential cation channel, subfam... 30 1.3
gi|154091310 transient receptor potential cation channel, subfam... 30 1.3
gi|154091320 transient receptor potential cation channel, subfam... 30 1.3
gi|154091318 transient receptor potential cation channel, subfam... 30 1.3
gi|154091316 transient receptor potential cation channel, subfam... 30 1.3
gi|154091314 transient receptor potential cation channel, subfam... 30 1.3
gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens] 29 2.2
gi|195947361 histidine acid phosphatase domain containing 2A iso... 28 3.7
gi|195947359 histidine acid phosphatase domain containing 2A iso... 28 3.7
gi|66932994 histidine acid phosphatase domain containing 2A isof... 28 3.7
gi|66932992 histidine acid phosphatase domain containing 2A isof... 28 3.7
gi|46447820 differentially expressed in FDCP 8 isoform 1 [Homo s... 28 3.7
gi|8923177 differentially expressed in FDCP 8 isoform 2 [Homo sa... 28 3.7
gi|156139122 CXXC finger 6 [Homo sapiens] 28 4.9
gi|121114283 polo-like kinase 4 [Homo sapiens] 28 4.9
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 28 6.4
gi|91208426 U5 snRNP-specific protein [Homo sapiens] 28 6.4
gi|155722985 SMC5 protein [Homo sapiens] 28 6.4
gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens] 27 8.4
gi|209863034 periostin, osteoblast specific factor isoform 4 [Ho... 27 8.4
>gi|7661832 Ssu72 RNA polymerase II CTD phosphatase homolog [Homo
sapiens]
Length = 194
Score = 405 bits (1040), Expect = e-113
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT 60
MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT
Sbjct: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT 60
Query: 61 YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVV 120
YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVV
Sbjct: 61 YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVV 120
Query: 121 EDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFE 180
EDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFE
Sbjct: 121 EDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFE 180
Query: 181 EKSGRTFLHTVCFY 194
EKSGRTFLHTVCFY
Sbjct: 181 EKSGRTFLHTVCFY 194
>gi|169217206 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 332 bits (850), Expect = 2e-91
Identities = 152/194 (78%), Positives = 177/194 (91%)
Query: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT 60
M SPLRVAVVC +NQN+SMEAH +L+KRGFSV+SFG HVKLPGPAP+KPN+YDFKTT
Sbjct: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
Query: 61 YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVV 120
YD+MYNDL+ KD+E YTQNG+L+MLDRNKRIK RPERFQ+CKD+FDLI+TCEE +YDQVV
Sbjct: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
Query: 121 EDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFE 180
EDLNSREQETC+PVHVVN+DIQDN E+A +GAFLICELCQCIQ +EDMENEID+LLQ+ E
Sbjct: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
Query: 181 EKSGRTFLHTVCFY 194
+K G+ FLHTVCFY
Sbjct: 181 KKRGQAFLHTVCFY 194
>gi|89060983 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 332 bits (850), Expect = 2e-91
Identities = 152/194 (78%), Positives = 177/194 (91%)
Query: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT 60
M SPLRVAVVC +NQN+SMEAH +L+KRGFSV+SFG HVKLPGPAP+KPN+YDFKTT
Sbjct: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
Query: 61 YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVV 120
YD+MYNDL+ KD+E YTQNG+L+MLDRNKRIK RPERFQ+CKD+FDLI+TCEE +YDQVV
Sbjct: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
Query: 121 EDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFE 180
EDLNSREQETC+PVHVVN+DIQDN E+A +GAFLICELCQCIQ +EDMENEID+LLQ+ E
Sbjct: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
Query: 181 EKSGRTFLHTVCFY 194
+K G+ FLHTVCFY
Sbjct: 181 KKRGQAFLHTVCFY 194
>gi|27486601 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 332 bits (850), Expect = 2e-91
Identities = 152/194 (78%), Positives = 177/194 (91%)
Query: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT 60
M SPLRVAVVC +NQN+SMEAH +L+KRGFSV+SFG HVKLPGPAP+KPN+YDFKTT
Sbjct: 1 MSLSPLRVAVVCWNNQNQSMEAHRVLNKRGFSVQSFGITPHVKLPGPAPNKPNIYDFKTT 60
Query: 61 YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVV 120
YD+MYNDL+ KD+E YTQNG+L+MLDRNKRIK RPERFQ+CKD+FDLI+TCEE +YDQVV
Sbjct: 61 YDEMYNDLITKDEEFYTQNGVLYMLDRNKRIKLRPERFQDCKDVFDLIITCEESIYDQVV 120
Query: 121 EDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFE 180
EDLNSREQETC+PVHVVN+DIQDN E+A +GAFLICELCQCIQ +EDMENEID+LLQ+ E
Sbjct: 121 EDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQKLE 180
Query: 181 EKSGRTFLHTVCFY 194
+K G+ FLHTVCFY
Sbjct: 181 KKRGQAFLHTVCFY 194
>gi|157384994 hypothetical protein LOC136157 [Homo sapiens]
Length = 194
Score = 289 bits (739), Expect = 1e-78
Identities = 136/194 (70%), Positives = 163/194 (84%)
Query: 1 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT 60
M SSPLRVAVVC SN NRSMEAH+IL ++G SVRSFGT +HV+LPG P+ P VYDF TT
Sbjct: 1 MLSSPLRVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRLPGRRPNHPVVYDFATT 60
Query: 61 YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVV 120
Y +MYNDLLRKD+E YT NGILH+L RN+RIKP PERFQ C + FD+I TCEERVYD VV
Sbjct: 61 YKEMYNDLLRKDRECYTHNGILHILGRNERIKPGPERFQECTEFFDVIFTCEERVYDTVV 120
Query: 121 EDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFE 180
EDL SREQ+T QPVHV+N+DI+D E A LGAFLICE+CQC+Q ++DME+ ++ELL + E
Sbjct: 121 EDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQCLQQSDDMEDSLEELLLQME 180
Query: 181 EKSGRTFLHTVCFY 194
EK+G++FLHTVCFY
Sbjct: 181 EKAGKSFLHTVCFY 194
>gi|21735598 programmed cell death 4 isoform 2 [Homo sapiens]
Length = 458
Score = 37.0 bits (84), Expect = 0.011
Identities = 17/64 (26%), Positives = 35/64 (54%)
Query: 118 QVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQ 177
+++ DLN E ++ PV V++ ++ + + L+ +LC + T D+E D+LL+
Sbjct: 175 EMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 234
Query: 178 EFEE 181
+ E
Sbjct: 235 DLPE 238
>gi|21735596 programmed cell death 4 isoform 1 [Homo sapiens]
Length = 469
Score = 37.0 bits (84), Expect = 0.011
Identities = 17/64 (26%), Positives = 35/64 (54%)
Query: 118 QVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQ 177
+++ DLN E ++ PV V++ ++ + + L+ +LC + T D+E D+LL+
Sbjct: 186 EMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 245
Query: 178 EFEE 181
+ E
Sbjct: 246 DLPE 249
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 30.8 bits (68), Expect = 0.76
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 85 LDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDN 144
L++ KR K E+ + + + L CE +V QV + + ++ ++ +Q+
Sbjct: 1212 LEQAKRFKANLEKNKQGLETDNKELACEVKVLQQVKAESEHKRKK-------LDAQVQEL 1264
Query: 145 HEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEK 182
H + + G L EL + ++ + + LL+E E+K
Sbjct: 1265 HAKVSEGDRLRVELAEKASKLQNELDNVSTLLEEAEKK 1302
>gi|169218111 PREDICTED: similar to pyruvate kinase, muscle [Homo
sapiens]
Length = 364
Score = 30.0 bits (66), Expect = 1.3
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 35 SFGTGTHVKLPGPAPDKPNV---------YDFKTTYDQMYNDLLRKDKELYTQNGILHML 85
S G+ V LPG A D P V + + D ++ +RK +++ +L
Sbjct: 202 SLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEK 261
Query: 86 DRNKRIKPRPERFQNCKDLFDLILTCEERV 115
+N +I + E + + FD IL + +
Sbjct: 262 GKNIKIISKIENHEGVRRQFDEILEASDGI 291
>gi|154091312 transient receptor potential cation channel, subfamily
M, member 3 isoform b [Homo sapiens]
Length = 1566
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 146 EEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKS 183
EEA A + C+LC+ + H + +D++ QE S
Sbjct: 519 EEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNS 556
>gi|154091308 transient receptor potential cation channel, subfamily
M, member 3 isoform f [Homo sapiens]
Length = 1579
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 146 EEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKS 183
EEA A + C+LC+ + H + +D++ QE S
Sbjct: 532 EEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNS 569
>gi|154091310 transient receptor potential cation channel, subfamily
M, member 3 isoform g [Homo sapiens]
Length = 1569
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 146 EEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKS 183
EEA A + C+LC+ + H + +D++ QE S
Sbjct: 522 EEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNS 559
>gi|154091320 transient receptor potential cation channel, subfamily
M, member 3 isoform a [Homo sapiens]
Length = 1554
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 146 EEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKS 183
EEA A + C+LC+ + H + +D++ QE S
Sbjct: 507 EEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNS 544
>gi|154091318 transient receptor potential cation channel, subfamily
M, member 3 isoform d [Homo sapiens]
Length = 1544
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 146 EEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKS 183
EEA A + C+LC+ + H + +D++ QE S
Sbjct: 497 EEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNS 534
>gi|154091316 transient receptor potential cation channel, subfamily
M, member 3 isoform e [Homo sapiens]
Length = 1556
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 146 EEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKS 183
EEA A + C+LC+ + H + +D++ QE S
Sbjct: 509 EEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNS 546
>gi|154091314 transient receptor potential cation channel, subfamily
M, member 3 isoform k [Homo sapiens]
Length = 1707
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 146 EEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKS 183
EEA A + C+LC+ + H + +D++ QE S
Sbjct: 660 EEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNS 697
>gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens]
Length = 2458
Score = 29.3 bits (64), Expect = 2.2
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTC------------EER 114
DLLR EL+ +G + R + RF++ FD +++C E R
Sbjct: 1345 DLLRHSTELFMDSGFSPLCQRMGAMVAF-RRFEDFTRNFDEVISCFANVPKDTPLFSEAR 1403
Query: 115 VYDQVVEDLNSREQETCQPVHVVNVDIQ--DNHEEATL 150
+D S +E P+H++NV IQ D+ E+ L
Sbjct: 1404 TSLYSEDDCKSLREE---PIHILNVSIQCADHLEDEAL 1438
>gi|195947361 histidine acid phosphatase domain containing 2A isoform
2 [Homo sapiens]
Length = 1408
Score = 28.5 bits (62), Expect = 3.7
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 92 KPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLG 151
+P E Q C+++ D+ C+ D++ + CQ V ++ Q+NH+
Sbjct: 1224 QPYEEVSQPCQEVPDISQPCQ---------DISEALSQPCQKVPDISQQCQENHDNGN-- 1272
Query: 152 AFLICELCQCIQHTEDMENEIDELLQEFEEK 182
CQ + H + +L Q+ E+
Sbjct: 1273 -----HTCQEVPHISQPCQKSSQLCQKVSEE 1298
>gi|195947359 histidine acid phosphatase domain containing 2A isoform
5 [Homo sapiens]
Length = 1433
Score = 28.5 bits (62), Expect = 3.7
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 92 KPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLG 151
+P E Q C+++ D+ C+ D++ + CQ V ++ Q+NH+
Sbjct: 1249 QPYEEVSQPCQEVPDISQPCQ---------DISEALSQPCQKVPDISQQCQENHDNGN-- 1297
Query: 152 AFLICELCQCIQHTEDMENEIDELLQEFEEK 182
CQ + H + +L Q+ E+
Sbjct: 1298 -----HTCQEVPHISQPCQKSSQLCQKVSEE 1323
>gi|66932994 histidine acid phosphatase domain containing 2A isoform 4
[Homo sapiens]
Length = 1194
Score = 28.5 bits (62), Expect = 3.7
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 92 KPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLG 151
+P E Q C+++ D+ C+ D++ + CQ V ++ Q+NH+
Sbjct: 1010 QPYEEVSQPCQEVPDISQPCQ---------DISEALSQPCQKVPDISQQCQENHDNGN-- 1058
Query: 152 AFLICELCQCIQHTEDMENEIDELLQEFEEK 182
CQ + H + +L Q+ E+
Sbjct: 1059 -----HTCQEVPHISQPCQKSSQLCQKVSEE 1084
>gi|66932992 histidine acid phosphatase domain containing 2A isoform 2
[Homo sapiens]
Length = 1408
Score = 28.5 bits (62), Expect = 3.7
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 92 KPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLG 151
+P E Q C+++ D+ C+ D++ + CQ V ++ Q+NH+
Sbjct: 1224 QPYEEVSQPCQEVPDISQPCQ---------DISEALSQPCQKVPDISQQCQENHDNGN-- 1272
Query: 152 AFLICELCQCIQHTEDMENEIDELLQEFEEK 182
CQ + H + +L Q+ E+
Sbjct: 1273 -----HTCQEVPHISQPCQKSSQLCQKVSEE 1298
>gi|46447820 differentially expressed in FDCP 8 isoform 1 [Homo
sapiens]
Length = 512
Score = 28.5 bits (62), Expect = 3.7
Identities = 16/66 (24%), Positives = 35/66 (53%)
Query: 117 DQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELL 176
++ + +L E E P V+++ + ++H +G FL ++ Q Q E+ + I EL
Sbjct: 102 EEALPELPPGEPEFRCPERVMDLGLSEDHFSRPVGLFLASDVQQLRQAIEECKQVILELP 161
Query: 177 QEFEEK 182
++ E++
Sbjct: 162 EQSEKQ 167
>gi|8923177 differentially expressed in FDCP 8 isoform 2 [Homo
sapiens]
Length = 197
Score = 28.5 bits (62), Expect = 3.7
Identities = 16/66 (24%), Positives = 35/66 (53%)
Query: 117 DQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELL 176
++ + +L E E P V+++ + ++H +G FL ++ Q Q E+ + I EL
Sbjct: 41 EEALPELPPGEPEFRCPERVMDLGLSEDHFSRPVGLFLASDVQQLRQAIEECKQVILELP 100
Query: 177 QEFEEK 182
++ E++
Sbjct: 101 EQSEKQ 106
>gi|156139122 CXXC finger 6 [Homo sapiens]
Length = 2136
Score = 28.1 bits (61), Expect = 4.9
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 90 RIKPRPERFQNCKDLFDLI-------LTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQ 142
++ PR + C L D L+C++ + Q+ ED+ ++ + + + + +
Sbjct: 1037 QLPPRNNEVEYCNQLLDSSKKLDSDDLSCQDATHTQIEEDVATQLTQLASIIKINYIKPE 1096
Query: 143 DNHEEATLGAFLICELCQ 160
D E+T + + C + Q
Sbjct: 1097 DKKVESTPTSLVTCNVQQ 1114
>gi|121114283 polo-like kinase 4 [Homo sapiens]
Length = 970
Score = 28.1 bits (61), Expect = 4.9
Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 119 VVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQE 178
+V+ + + + CQ H +++ + E++ +L+ E+C H +M + ++
Sbjct: 53 MVQRVQNEVKIHCQLKHPSILELYNYFEDSNY-VYLVLEMC----HNGEMNRYLKNRVKP 107
Query: 179 FEEKSGRTFLHTV 191
F E R F+H +
Sbjct: 108 FSENEARHFMHQI 120
>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
protein 6 [Homo sapiens]
Length = 724
Score = 27.7 bits (60), Expect = 6.4
Identities = 26/143 (18%), Positives = 67/143 (46%), Gaps = 16/143 (11%)
Query: 50 DKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERF----QNCKDLF 105
++ ++ K + + +++++++ Q +H D+ ++I+ + E+ + ++
Sbjct: 534 EQEEIWRQKEKIHEQEEKIRKQEEKMWRQEEKMH--DQEEKIREQEEKVWRQEEKIREQE 591
Query: 106 DLILTCEERVYDQVV------EDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELC 159
+ I EE++ +Q E + +E++ C+ +Q+ E+ I E
Sbjct: 592 EKIREQEEKIREQEEMTQEQEEKMGEQEEKMCEQEE----KMQEQEEKMRRQEEKIREQE 647
Query: 160 QCIQHTEDMENEIDELLQEFEEK 182
+ I+ E+ E +E++QE EEK
Sbjct: 648 KKIREQEEKIREQEEMMQEQEEK 670
>gi|91208426 U5 snRNP-specific protein [Homo sapiens]
Length = 2335
Score = 27.7 bits (60), Expect = 6.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 96 ERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPV 134
E N ++L DL++ CE ++ ++ LNS+ PV
Sbjct: 1276 EAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPV 1314
>gi|155722985 SMC5 protein [Homo sapiens]
Length = 1101
Score = 27.7 bits (60), Expect = 6.4
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 71 KDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQET 130
K+K Y Q M+ RN+R K ERF K DLI E + VE N R++
Sbjct: 230 KEKTEYLQK----MVQRNERYKQDVERFYERKRHLDLIEMLEAK--RPWVEYENVRQE-- 281
Query: 131 CQPVHVVNVDIQDNHEEATLGAF-LICELCQCIQHTEDMENEIDELLQEFEEKS 183
+ V +V +++ + G + C + E+MENE L +EK+
Sbjct: 282 YEEVKLVRDRVKEEVRKLKEGQIPVTCRI-------EEMENERHNLEARIKEKA 328
>gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
Length = 614
Score = 27.3 bits (59), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 53 NVYDFKTTYDQMYNDLLRKDKELYTQNGI 81
N + + YD+ Y+ LL++D TQNG+
Sbjct: 506 NTFRDRENYDRGYSSLLKRDFGAKTQNGV 534
>gi|209863034 periostin, osteoblast specific factor isoform 4 [Homo
sapiens]
Length = 751
Score = 27.3 bits (59), Expect = 8.4
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 64 MYNDLLRKDKELYTQNGILHMLDR 87
+ N+L K+ ++ T NG++H++D+
Sbjct: 603 LVNELKSKESDIMTTNGVIHVVDK 626
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,241,664
Number of Sequences: 37866
Number of extensions: 370217
Number of successful extensions: 1142
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1114
Number of HSP's gapped (non-prelim): 42
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.