Guide to the Human Genome
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Name: PRPF8 Sequence: fasta or formatted (2335aa) NCBI GI: 91208426
Description:

U5 snRNP-specific protein

Referenced in:

Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3        123           2
 C cysteine            1.0         23           1
 D aspartate           5.5        128           3
 E glutamate           6.0        140           2
 F phenylalanine       4.4        102           2
 G glycine             4.5        104           2
 H histidine           3.1         73           2
 I isoleucine          6.1        142           3
 K lysine              6.5        152           2
 L leucine            10.4        242           2
 M methionine          2.6         60           2
 N asparagine          5.1        118           2
 P proline             5.7        134           3
 Q glutamine           4.8        113           2
 R arginine            6.4        149           2
 S serine              4.6        108           2
 T threonine           5.6        131           3
 V valine              5.5        128           2
 W tryptophan          2.6         61           2
 Y tyrosine            4.5        104           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   U5 snRNP-specific protein 
ANKRD17               0.003   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.003   ankyrin repeat domain protein 17 isoform b 
EIF3A                 0.003   eukaryotic translation initiation factor 3, subunit 1...
STAMBP                0.002   STAM binding protein 
STAMBP                0.002   STAM binding protein 
STAMBP                0.002   STAM binding protein 
STAMBPL1              0.002   STAM binding protein-like 1 
NPTN                  0.002   neuroplastin isoform c precursor 
NPTN                  0.002   neuroplastin isoform b precursor 
AMPH                  0.002   amphiphysin isoform 2 
AMPH                  0.002   amphiphysin isoform 1 
PHLDB1                0.001   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.001   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.001   pleckstrin homology-like domain, family B, member 1 ...
CROT                  0.001   peroxisomal carnitine O-octanoyltransferase isoform...
CROT                  0.001   peroxisomal carnitine O-octanoyltransferase isoform ...
JUN                   0.001   jun oncogene 
TPR                   0.001   nuclear pore complex-associated protein TPR 
ELTD1                 0.001   EGF, latrophilin and seven transmembrane domain con...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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