Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 7661734
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7661734 mRNA decapping enzyme [Homo sapiens]
(337 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7661734 mRNA decapping enzyme [Homo sapiens] 681 0.0
gi|28329436 aprataxin isoform a [Homo sapiens] 38 0.011
gi|28329433 aprataxin isoform c [Homo sapiens] 38 0.011
gi|28329427 aprataxin isoform d [Homo sapiens] 38 0.011
gi|28329430 aprataxin isoform b [Homo sapiens] 38 0.011
gi|8923156 aprataxin isoform d [Homo sapiens] 38 0.011
gi|24415404 MDN1, midasin homolog [Homo sapiens] 37 0.025
gi|224994173 roundabout 1 isoform d [Homo sapiens] 34 0.21
gi|224994171 roundabout 1 isoform c [Homo sapiens] 34 0.21
gi|19743806 roundabout 1 isoform b [Homo sapiens] 34 0.21
gi|239748173 PREDICTED: similar to roundabout 1 isoform 1 [Homo ... 34 0.21
gi|239748171 PREDICTED: similar to roundabout 1 isoform 2 [Homo ... 34 0.21
gi|4506569 roundabout 1 isoform a [Homo sapiens] 34 0.21
gi|169203160 PREDICTED: hypothetical protein [Homo sapiens] 31 1.4
gi|169203656 PREDICTED: hypothetical protein [Homo sapiens] 31 1.4
gi|169202387 PREDICTED: hypothetical protein [Homo sapiens] 31 1.4
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 31 1.8
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 31 1.8
gi|38788380 dehydrogenase E1 and transketolase domain containing... 30 2.3
gi|31742505 Rho family guanine-nucleotide exchange factor [Homo ... 29 5.2
gi|115387104 aldehyde dehydrogenase 9A1 [Homo sapiens] 29 6.8
gi|72534720 IQ motif containing H isoform 1 [Homo sapiens] 28 8.9
gi|12232475 IQ motif containing H isoform 2 [Homo sapiens] 28 8.9
gi|9845285 cytochrome P450, family 26, subfamily b, polypeptide ... 28 8.9
>gi|7661734 mRNA decapping enzyme [Homo sapiens]
Length = 337
Score = 681 bits (1757), Expect = 0.0
Identities = 337/337 (100%), Positives = 337/337 (100%)
Query: 1 MADAAPQLGKRKRELDVEEAHAASTEEKEAGVGNGTCAPVRLPFSGFRLQKVLRESARDK 60
MADAAPQLGKRKRELDVEEAHAASTEEKEAGVGNGTCAPVRLPFSGFRLQKVLRESARDK
Sbjct: 1 MADAAPQLGKRKRELDVEEAHAASTEEKEAGVGNGTCAPVRLPFSGFRLQKVLRESARDK 60
Query: 61 IIFLHGKVNEASGDGDGEDAVVILEKTPFQVEQVAQLLTGSPELQLQFSNDIYSTYHLFP 120
IIFLHGKVNEASGDGDGEDAVVILEKTPFQVEQVAQLLTGSPELQLQFSNDIYSTYHLFP
Sbjct: 61 IIFLHGKVNEASGDGDGEDAVVILEKTPFQVEQVAQLLTGSPELQLQFSNDIYSTYHLFP 120
Query: 121 PRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNITLPHLESQSLSIQWVYNIL 180
PRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNITLPHLESQSLSIQWVYNIL
Sbjct: 121 PRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNITLPHLESQSLSIQWVYNIL 180
Query: 181 DKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPL 240
DKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPL
Sbjct: 181 DKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPL 240
Query: 241 LRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFEAPGSGVERAHLLAE 300
LRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFEAPGSGVERAHLLAE
Sbjct: 241 LRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFEAPGSGVERAHLLAE 300
Query: 301 VIENLECDPRHYQQRTLTFALRADDPLLKLLQEAQQS 337
VIENLECDPRHYQQRTLTFALRADDPLLKLLQEAQQS
Sbjct: 301 VIENLECDPRHYQQRTLTFALRADDPLLKLLQEAQQS 337
>gi|28329436 aprataxin isoform a [Homo sapiens]
Length = 342
Score = 38.1 bits (87), Expect = 0.011
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 227 IRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFE 286
I SL+ + EHL LL+++ G++ I+ R+ H +PS H+H+H + F+
Sbjct: 210 ISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFD 269
Query: 287 AP 288
+P
Sbjct: 270 SP 271
>gi|28329433 aprataxin isoform c [Homo sapiens]
Length = 254
Score = 38.1 bits (87), Expect = 0.011
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 227 IRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFE 286
I SL+ + EHL LL+++ G++ I+ R+ H +PS H+H+H + F+
Sbjct: 122 ISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFD 181
Query: 287 AP 288
+P
Sbjct: 182 SP 183
>gi|28329427 aprataxin isoform d [Homo sapiens]
Length = 168
Score = 38.1 bits (87), Expect = 0.011
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 227 IRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFE 286
I SL+ + EHL LL+++ G++ I+ R+ H +PS H+H+H + F+
Sbjct: 36 ISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFD 95
Query: 287 AP 288
+P
Sbjct: 96 SP 97
>gi|28329430 aprataxin isoform b [Homo sapiens]
Length = 306
Score = 38.1 bits (87), Expect = 0.011
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 227 IRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFE 286
I SL+ + EHL LL+++ G++ I+ R+ H +PS H+H+H + F+
Sbjct: 224 ISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFD 283
Query: 287 AP 288
+P
Sbjct: 284 SP 285
>gi|8923156 aprataxin isoform d [Homo sapiens]
Length = 168
Score = 38.1 bits (87), Expect = 0.011
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 227 IRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFE 286
I SL+ + EHL LL+++ G++ I+ R+ H +PS H+H+H + F+
Sbjct: 36 ISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFD 95
Query: 287 AP 288
+P
Sbjct: 96 SP 97
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 37.0 bits (84), Expect = 0.025
Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
Query: 88 PFQVEQVAQLLTGSPELQLQFSNDIYSTYHLFPPRQLNDVKTTVVYPATEKHLQKYLRQD 147
PF ++ + +++ L+F+ +TY + P L ++ AT + ++
Sbjct: 2480 PFTLQDLEKIMQSPSPENLKFNAVEVNTYWIDEPDVLVMAVKLLIERATNQDWMLRVKWL 2539
Query: 148 LRLIRETGDDYRNITLPHLESQSLSIQWVYNILDKKAEADRIVFENPDPSDGFVLIPDLK 207
L + +I + HLE+ + S++ Y+ A ++ P+ +D FV+ D +
Sbjct: 2540 YHLAKNIPQGLESIQI-HLEASAASLRNFYSHSLSGAVSNVFKILQPNTTDEFVIPLDPR 2598
Query: 208 WNQQQLDDLYLIAICHRRGIRSLRDLTPE 236
WN Q LD IR+L D P+
Sbjct: 2599 WNMQALD-----------MIRNLMDFDPQ 2616
>gi|224994173 roundabout 1 isoform d [Homo sapiens]
Length = 1551
Score = 33.9 bits (76), Expect = 0.21
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 23/111 (20%)
Query: 114 STYHLFPPRQLND-VKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNITLPH-LESQSL 171
+ Y + P Q++D VKT V P ++ K ++ RE G+ ++ P L S S+
Sbjct: 602 NAYGISDPSQISDPVKTQDVLPTSQGVDHKQVQ------RELGNAVLHLHNPTVLSSSSI 655
Query: 172 SIQWV----------YNILDKKA-----EADRIVFENPDPSDGFVLIPDLK 207
+ W Y IL + + E+D +VFE P+ V+IPDL+
Sbjct: 656 EVHWTVDQQSQYIQGYKILYRPSGANHGESDWLVFEVRTPAKNSVVIPDLR 706
>gi|224994171 roundabout 1 isoform c [Homo sapiens]
Length = 1606
Score = 33.9 bits (76), Expect = 0.21
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 23/111 (20%)
Query: 114 STYHLFPPRQLND-VKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNITLPH-LESQSL 171
+ Y + P Q++D VKT V P ++ K ++ RE G+ ++ P L S S+
Sbjct: 602 NAYGISDPSQISDPVKTQDVLPTSQGVDHKQVQ------RELGNAVLHLHNPTVLSSSSI 655
Query: 172 SIQWV----------YNILDKKA-----EADRIVFENPDPSDGFVLIPDLK 207
+ W Y IL + + E+D +VFE P+ V+IPDL+
Sbjct: 656 EVHWTVDQQSQYIQGYKILYRPSGANHGESDWLVFEVRTPAKNSVVIPDLR 706
>gi|19743806 roundabout 1 isoform b [Homo sapiens]
Length = 1612
Score = 33.9 bits (76), Expect = 0.21
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 23/111 (20%)
Query: 114 STYHLFPPRQLND-VKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNITLPH-LESQSL 171
+ Y + P Q++D VKT V P ++ K ++ RE G+ ++ P L S S+
Sbjct: 599 NAYGISDPSQISDPVKTQDVLPTSQGVDHKQVQ------RELGNAVLHLHNPTVLSSSSI 652
Query: 172 SIQWV----------YNILDKKA-----EADRIVFENPDPSDGFVLIPDLK 207
+ W Y IL + + E+D +VFE P+ V+IPDL+
Sbjct: 653 EVHWTVDQQSQYIQGYKILYRPSGANHGESDWLVFEVRTPAKNSVVIPDLR 703
>gi|239748173 PREDICTED: similar to roundabout 1 isoform 1 [Homo
sapiens]
Length = 1562
Score = 33.9 bits (76), Expect = 0.21
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 23/111 (20%)
Query: 114 STYHLFPPRQLND-VKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNITLPH-LESQSL 171
+ Y + P Q++D VKT V P ++ K ++ RE G+ ++ P L S S+
Sbjct: 602 NAYGISDPSQISDPVKTQDVLPTSQGVDHKQVQ------RELGNAVLHLHNPTVLSSSSI 655
Query: 172 SIQWV----------YNILDKKA-----EADRIVFENPDPSDGFVLIPDLK 207
+ W Y IL + + E+D +VFE P+ V+IPDL+
Sbjct: 656 EVHWTVDQQSQYIQGYKILYRPSGANHGESDWLVFEVRTPAKNSVVIPDLR 706
>gi|239748171 PREDICTED: similar to roundabout 1 isoform 2 [Homo
sapiens]
Length = 1615
Score = 33.9 bits (76), Expect = 0.21
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 23/111 (20%)
Query: 114 STYHLFPPRQLND-VKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNITLPH-LESQSL 171
+ Y + P Q++D VKT V P ++ K ++ RE G+ ++ P L S S+
Sbjct: 602 NAYGISDPSQISDPVKTQDVLPTSQGVDHKQVQ------RELGNAVLHLHNPTVLSSSSI 655
Query: 172 SIQWV----------YNILDKKA-----EADRIVFENPDPSDGFVLIPDLK 207
+ W Y IL + + E+D +VFE P+ V+IPDL+
Sbjct: 656 EVHWTVDQQSQYIQGYKILYRPSGANHGESDWLVFEVRTPAKNSVVIPDLR 706
>gi|4506569 roundabout 1 isoform a [Homo sapiens]
Length = 1651
Score = 33.9 bits (76), Expect = 0.21
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 23/111 (20%)
Query: 114 STYHLFPPRQLND-VKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNITLPH-LESQSL 171
+ Y + P Q++D VKT V P ++ K ++ RE G+ ++ P L S S+
Sbjct: 638 NAYGISDPSQISDPVKTQDVLPTSQGVDHKQVQ------RELGNAVLHLHNPTVLSSSSI 691
Query: 172 SIQWV----------YNILDKKA-----EADRIVFENPDPSDGFVLIPDLK 207
+ W Y IL + + E+D +VFE P+ V+IPDL+
Sbjct: 692 EVHWTVDQQSQYIQGYKILYRPSGANHGESDWLVFEVRTPAKNSVVIPDLR 742
>gi|169203160 PREDICTED: hypothetical protein [Homo sapiens]
Length = 638
Score = 31.2 bits (69), Expect = 1.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 9 GKRKRELDVEEAHAASTEEKEAGVGNGTCAPVRLP 43
G+R REL EE S ++ VG G+ AP R P
Sbjct: 441 GRRPRELGTEETTVQSAAKRRLSVGTGSRAPGRKP 475
>gi|169203656 PREDICTED: hypothetical protein [Homo sapiens]
Length = 638
Score = 31.2 bits (69), Expect = 1.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 9 GKRKRELDVEEAHAASTEEKEAGVGNGTCAPVRLP 43
G+R REL EE S ++ VG G+ AP R P
Sbjct: 441 GRRPRELGTEETTVQSAAKRRLSVGTGSRAPGRKP 475
>gi|169202387 PREDICTED: hypothetical protein [Homo sapiens]
Length = 638
Score = 31.2 bits (69), Expect = 1.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 9 GKRKRELDVEEAHAASTEEKEAGVGNGTCAPVRLP 43
G+R REL EE S ++ VG G+ AP R P
Sbjct: 441 GRRPRELGTEETTVQSAAKRRLSVGTGSRAPGRKP 475
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 30.8 bits (68), Expect = 1.8
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 154 TGDDYRNITLPHLESQSLSIQWVYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQL 213
T D+ L LE+ S ++ +Y +L + E I+ EN S L+ N + L
Sbjct: 541 TNLDWLVSKLDRLEASSGILEVLYCVLIESPEVLNIIQENHIKSI-ISLLDKHGRNHKVL 599
Query: 214 DDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQ 247
D L + +C+ +RS +DL E+L R +L Q
Sbjct: 600 DVLCSLCVCNGVAVRSNQDLITENLLPGRELLLQ 633
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 30.8 bits (68), Expect = 1.8
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 154 TGDDYRNITLPHLESQSLSIQWVYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQL 213
T D+ L LE+ S ++ +Y +L + E I+ EN S L+ N + L
Sbjct: 541 TNLDWLVSKLDRLEASSGILEVLYCVLIESPEVLNIIQENHIKSI-ISLLDKHGRNHKVL 599
Query: 214 DDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQ 247
D L + +C+ +RS +DL E+L R +L Q
Sbjct: 600 DVLCSLCVCNGVAVRSNQDLITENLLPGRELLLQ 633
>gi|38788380 dehydrogenase E1 and transketolase domain containing 1
[Homo sapiens]
Length = 919
Score = 30.4 bits (67), Expect = 2.3
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 181 DKKAEADRIVFENPDPSDGFVLIPDL---KWNQQQLDD-LYLIAICHR--RGIRSLRDLT 234
++ A R+ FE V+I L +W +LD+ Y I ++ R +S+ D
Sbjct: 403 EEVVRATRLAFEYQRQFRKDVIIDLLCYRQWGHNELDEPFYTNPIMYKIIRARKSIPDTY 462
Query: 235 PEHLPLLRNILHQGQEAILQRYRMK-GDHLRVYLHYLPSYYHLHVHFTAL 283
EHL + + I Y K DHL HY P +L H+ L
Sbjct: 463 AEHLIAGGLMTQEEVSEIKSSYYAKLNDHLNNMAHYRPPALNLQAHWQGL 512
>gi|31742505 Rho family guanine-nucleotide exchange factor [Homo
sapiens]
Length = 1114
Score = 29.3 bits (64), Expect = 5.2
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 12 KRELDVEEAHAASTEEKEAGVGNGTCAP 39
K E D EE STEE+ AG G AP
Sbjct: 1066 KEERDEEETATRSTEEERAGASTGRLAP 1093
>gi|115387104 aldehyde dehydrogenase 9A1 [Homo sapiens]
Length = 518
Score = 28.9 bits (63), Expect = 6.8
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 16 DVEEAHAASTEEKEAG---VGNGTCAPVRLPFSGFRLQKVLRESARDKIIFLHGKVNEAS 72
D++ AH E +AG + N +PV LPF G++ RE+ R I +
Sbjct: 451 DIQRAHRV-VAELQAGTCFINNYNVSPVELPFGGYKKSGFGRENGRVTIEYYSQLKTVCV 509
Query: 73 GDGDGEDA 80
GD E A
Sbjct: 510 EMGDVESA 517
>gi|72534720 IQ motif containing H isoform 1 [Homo sapiens]
Length = 1027
Score = 28.5 bits (62), Expect = 8.9
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 237 HLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFEAP 288
H L+ IL + ++ L+ +R++ HL + + + +H +LG+ P
Sbjct: 411 HKTRLKKILKESRQRHLENFRIRAKHLAANWNRIRTSRRTIIHIPSLGYSQP 462
>gi|12232475 IQ motif containing H isoform 2 [Homo sapiens]
Length = 621
Score = 28.5 bits (62), Expect = 8.9
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 237 HLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFEAP 288
H L+ IL + ++ L+ +R++ HL + + + +H +LG+ P
Sbjct: 163 HKTRLKKILKESRQRHLENFRIRAKHLAANWNRIRTSRRTIIHIPSLGYSQP 214
>gi|9845285 cytochrome P450, family 26, subfamily b, polypeptide 1
[Homo sapiens]
Length = 512
Score = 28.5 bits (62), Expect = 8.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 32 VGNGTCAPVRLPFSGFR--------LQKVLRESARDKIIFLHGK 67
V N PV LPFSG+R LQK L ++ R+K+ GK
Sbjct: 218 VDNVFSLPVDLPFSGYRRGIQARQILQKGLEKAIREKLQCTQGK 261
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,366,062
Number of Sequences: 37866
Number of extensions: 608421
Number of successful extensions: 1295
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1277
Number of HSP's gapped (non-prelim): 29
length of query: 337
length of database: 18,247,518
effective HSP length: 103
effective length of query: 234
effective length of database: 14,347,320
effective search space: 3357272880
effective search space used: 3357272880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.