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Search of human proteins with 7657577
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657577 SHP2-interacting transmembrane adaptor protein [Homo
sapiens]
(196 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657577 SHP2-interacting transmembrane adaptor protein [Homo ... 401 e-112
gi|24308334 family with sequence similarity 120B [Homo sapiens] 40 0.001
gi|100913021 BCL2-like 12 isoform 3 [Homo sapiens] 34 0.070
gi|20336330 BCL2-like 12 isoform 1 [Homo sapiens] 34 0.091
gi|239747350 PREDICTED: hypothetical protein XP_002346429 [Homo ... 33 0.16
gi|239741175 PREDICTED: hypothetical protein XP_002342127 [Homo ... 33 0.16
gi|239754487 PREDICTED: hypothetical protein [Homo sapiens] 33 0.20
gi|239749042 PREDICTED: hypothetical protein [Homo sapiens] 33 0.20
gi|239743067 PREDICTED: hypothetical protein [Homo sapiens] 33 0.20
gi|239508713 PREDICTED: hypothetical protein [Homo sapiens] 33 0.20
gi|41281612 zinc finger protein 828 [Homo sapiens] 32 0.35
gi|239753623 PREDICTED: hypothetical protein [Homo sapiens] 31 0.59
gi|239752810 PREDICTED: hypothetical protein [Homo sapiens] 31 0.59
gi|239748202 PREDICTED: hypothetical protein XP_002346594 [Homo ... 31 0.59
gi|239742100 PREDICTED: hypothetical protein XP_002342435 [Homo ... 31 0.59
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 31 0.59
gi|169214011 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|239753746 PREDICTED: similar to BCL2-like 12 [Homo sapiens] 30 1.0
gi|113428768 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|239748229 PREDICTED: hypothetical protein XP_002346597 [Homo ... 30 1.0
gi|113428351 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|239742130 PREDICTED: hypothetical protein XP_002342439 [Homo ... 30 1.0
gi|15721939 metastatic lymph node 51 [Homo sapiens] 30 1.0
gi|19923352 NK3 homeobox 1 [Homo sapiens] 30 1.3
gi|54607137 T-cell receptor interacting molecule [Homo sapiens] 30 1.3
gi|31543392 peroxisome proliferator-activated receptor gamma, co... 30 1.7
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 30 1.7
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 30 1.7
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 30 1.7
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 30 1.7
>gi|7657577 SHP2-interacting transmembrane adaptor protein [Homo
sapiens]
Length = 196
Score = 401 bits (1030), Expect = e-112
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MNQADPRLRAVCLWTLTSAAMSRGDNCTDLLALGIPSITQAWGLWVLLGAVTLLFLISLA 60
MNQADPRLRAVCLWTLTSAAMSRGDNCTDLLALGIPSITQAWGLWVLLGAVTLLFLISLA
Sbjct: 1 MNQADPRLRAVCLWTLTSAAMSRGDNCTDLLALGIPSITQAWGLWVLLGAVTLLFLISLA 60
Query: 61 AHLSQWTRGRSRSHPGQGRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARA 120
AHLSQWTRGRSRSHPGQGRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARA
Sbjct: 61 AHLSQWTRGRSRSHPGQGRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARA 120
Query: 121 AEEVMCYTSLQLRPPQGRIPGPGTPVKYSEVVLDSEPKSQASGPEPELYASVCAQTRRAR 180
AEEVMCYTSLQLRPPQGRIPGPGTPVKYSEVVLDSEPKSQASGPEPELYASVCAQTRRAR
Sbjct: 121 AEEVMCYTSLQLRPPQGRIPGPGTPVKYSEVVLDSEPKSQASGPEPELYASVCAQTRRAR 180
Query: 181 ASFPDQAYANSQPAAS 196
ASFPDQAYANSQPAAS
Sbjct: 181 ASFPDQAYANSQPAAS 196
>gi|24308334 family with sequence similarity 120B [Homo sapiens]
Length = 910
Score = 40.0 bits (92), Expect = 0.001
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 82 ESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARAAEEVMCYTSLQLRPPQGRIPG 141
ES EVP+Y + Q + DPEP Q+ PT GP E MC P+ +P
Sbjct: 360 ESRREVPVYTDSEPRQEVPMCSDPEPRQEVPTCTGPESRREVPMCSDP----EPRQEVPM 415
Query: 142 PGTPVKYSEVVL--DSEPKSQ 160
P EV + DSEP+ +
Sbjct: 416 CTGPEARQEVPMYTDSEPRQE 436
Score = 32.7 bits (73), Expect = 0.20
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 82 ESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARAAEEVMCYTSLQLRPPQGRIPG 141
E+ +EVP+Y + Q + D EP Q+ P G + +EV YT + R +P
Sbjct: 420 EARQEVPMYTDSEPRQEVPMYTDSEPRQEVPMYTG-SEPRQEVPMYTGPESRQ---EVPM 475
Query: 142 PGTPVKYSEVVLDSEPKSQ----ASGPEPELYASVC 173
P EV++ ++P+S+ +G E + +C
Sbjct: 476 YTGPESRQEVLIRTDPESRQEIMCTGHESKQEVPIC 511
Score = 30.4 bits (67), Expect = 1.0
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 24/117 (20%)
Query: 82 ESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARAAEEVMCYTSLQLRPPQGRIPG 141
ES EEVP + D E Q+ P GP + EV YT + P+ +P
Sbjct: 336 ESREEVP------------MCSDAESRQEVPMCTGP-ESRREVPVYTDSE---PRQEVPM 379
Query: 142 PGTPVKYSEVVLDSEPKSQ-----ASGPEPELYASVCAQTRRARASFPDQAYANSQP 193
P EV + P+S+ S PEP +C AR P Y +S+P
Sbjct: 380 CSDPEPRQEVPTCTGPESRREVPMCSDPEPRQEVPMCTGP-EARQEVP--MYTDSEP 433
>gi|100913021 BCL2-like 12 isoform 3 [Homo sapiens]
Length = 333
Score = 34.3 bits (77), Expect = 0.070
Identities = 50/178 (28%), Positives = 67/178 (37%), Gaps = 31/178 (17%)
Query: 49 GAVTLLFLISLAAHLSQWTRGRSRSHPGQGRSGESVEEVPLYGNL-----HYLQTGRLSQ 103
G V L+ + + Q R R PG G S EE+ L + +L+ G +
Sbjct: 53 GKVELIKFVRVQWRRPQVEWRRRRWGPGPGASMAGSEELGLREDTLRVLAAFLRRGEAAG 112
Query: 104 DP-----EPDQQDPT-------------LGGPARAAEEVMCYTSLQLRPPQGRIPGPGTP 145
P P Q++PT LG A +E SL +RP G PGP TP
Sbjct: 113 SPVPTPPSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRP-CSLPIRPCYGLEPGPATP 171
Query: 146 VKYSEVVLDSEPKSQ---ASGPEPELYASVCAQ----TRRARASFPDQAYANSQPAAS 196
Y+ V E Q S P PEL + RR A ++A +Q AS
Sbjct: 172 DFYALVAQRLEQLVQEQLKSPPSPELQGPPSTEKEAILRRLVALLEEEAEVINQKLAS 229
>gi|20336330 BCL2-like 12 isoform 1 [Homo sapiens]
Length = 334
Score = 33.9 bits (76), Expect = 0.091
Identities = 50/179 (27%), Positives = 67/179 (37%), Gaps = 32/179 (17%)
Query: 49 GAVTLLFLISLAAHLSQWTRGRSRSHPGQGRSGESVEEVPLYGNL-----HYLQTGRLSQ 103
G V L+ + + Q R R PG G S EE+ L + +L+ G +
Sbjct: 53 GKVELIKFVRVQWRRPQVEWRRRRWGPGPGASMAGSEELGLREDTLRVLAAFLRRGEAAG 112
Query: 104 DP------EPDQQDPT-------------LGGPARAAEEVMCYTSLQLRPPQGRIPGPGT 144
P P Q++PT LG A +E SL +RP G PGP T
Sbjct: 113 SPVPTPPRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRP-CSLPIRPCYGLEPGPAT 171
Query: 145 PVKYSEVVLDSEPKSQ---ASGPEPELYASVCAQ----TRRARASFPDQAYANSQPAAS 196
P Y+ V E Q S P PEL + RR A ++A +Q AS
Sbjct: 172 PDFYALVAQRLEQLVQEQLKSPPSPELQGPPSTEKEAILRRLVALLEEEAEVINQKLAS 230
>gi|239747350 PREDICTED: hypothetical protein XP_002346429 [Homo
sapiens]
Length = 438
Score = 33.1 bits (74), Expect = 0.16
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 21/111 (18%)
Query: 69 GRSRSHPGQGRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARAAEEVMCYT 128
GR + PG+ R +E +++ E D+Q P P R E
Sbjct: 325 GRRKGSPGRLRGPPGADE---------------AEEVEADEQHPLAAAPPRVVVERRAAA 369
Query: 129 SLQLRPPQGRI------PGPGTPVKYSEVVLDSEPKSQASGPEPELYASVC 173
L LR + + G G + E V +P +QA G +P L AS C
Sbjct: 370 VLALRDDRFVVLVVLHGAGCGASLPPREDVPQQQPHTQAPGVQPGLPASNC 420
>gi|239741175 PREDICTED: hypothetical protein XP_002342127 [Homo
sapiens]
Length = 352
Score = 33.1 bits (74), Expect = 0.16
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 21/111 (18%)
Query: 69 GRSRSHPGQGRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARAAEEVMCYT 128
GR + PG+ R +E +++ E D+Q P P R E
Sbjct: 239 GRRKGSPGRLRGPPGADE---------------AEEVEADEQHPLAAAPPRVVVERRAAA 283
Query: 129 SLQLRPPQGRI------PGPGTPVKYSEVVLDSEPKSQASGPEPELYASVC 173
L LR + + G G + E V +P +QA G +P L AS C
Sbjct: 284 VLALRDDRFVVLVVLHGAGCGASLPPREDVPQQQPHTQAPGVQPGLPASNC 334
>gi|239754487 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 32.7 bits (73), Expect = 0.20
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 114 LGGPARAAEEVMCYTSLQLRPPQGRIPGPG--TPVKYSEVVLDSEPKSQASGPEPELYAS 171
LGG R ++C T L +R G + GPG TPV S + S P ++A G +S
Sbjct: 363 LGGTDRVVLSLVCVTLLLVR---GHLQGPGAHTPVGTSSAPVPSRPGTRAEGWTMAAQSS 419
Query: 172 VCAQT 176
V T
Sbjct: 420 VAKMT 424
>gi|239749042 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 32.7 bits (73), Expect = 0.20
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 114 LGGPARAAEEVMCYTSLQLRPPQGRIPGPG--TPVKYSEVVLDSEPKSQASGPEPELYAS 171
LGG R ++C T L +R G + GPG TPV S + S P ++A G +S
Sbjct: 363 LGGTDRVVLSLVCVTLLLVR---GHLQGPGAHTPVGTSSAPVPSRPGTRAEGWTMAAQSS 419
Query: 172 VCAQT 176
V T
Sbjct: 420 VAKMT 424
>gi|239743067 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 32.7 bits (73), Expect = 0.20
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 114 LGGPARAAEEVMCYTSLQLRPPQGRIPGPG--TPVKYSEVVLDSEPKSQASGPEPELYAS 171
LGG R ++C T L +R G + GPG TPV S + S P ++A G +S
Sbjct: 363 LGGTDRVVLSLVCVTLLLVR---GHLQGPGAHTPVGTSSAPVPSRPGTRAEGWTMAAQSS 419
Query: 172 VCAQT 176
V T
Sbjct: 420 VAKMT 424
>gi|239508713 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 32.7 bits (73), Expect = 0.20
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 114 LGGPARAAEEVMCYTSLQLRPPQGRIPGPG--TPVKYSEVVLDSEPKSQASGPEPELYAS 171
LGG R ++C T L +R G + GPG TPV S + S P ++A G +S
Sbjct: 363 LGGTDRVVLSLVCVTLLLVR---GHLQGPGAHTPVGTSSAPVPSRPGTRAEGWTMAAQSS 419
Query: 172 VCAQT 176
V T
Sbjct: 420 VAKMT 424
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 32.0 bits (71), Expect = 0.35
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 135 PQGRIPGPGTPVKYSEVV---------LDSEPKSQASGPEPELYASVCAQTRRARASFPD 185
P+ R PGP P + + +D+EP+ A PEP A + R RA FP+
Sbjct: 494 PETRKPGPSGPSESPKAASDIWKPVLSIDTEPRKPALFPEPAKTAPPASPEARKRALFPE 553
>gi|239753623 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 31.2 bits (69), Expect = 0.59
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 60 AAHLSQWTRGRSRSHPGQGRSGESVEEVP 88
AAH R R RSHPG+G S E V P
Sbjct: 170 AAHGGHRARARKRSHPGEGASAERVLPKP 198
>gi|239752810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 31.2 bits (69), Expect = 0.59
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 103 QDPEPDQQDPTLGGPARAAEEVMCYTSLQLRPPQGRI------PGPGTPVKYSEVVLDSE 156
++ E D+Q P P R E L LR + + G G + E V +
Sbjct: 113 EEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCGASLPPREDVPQQQ 172
Query: 157 PKSQASGPEPELYASVC 173
P +QA G +P L AS C
Sbjct: 173 PHTQAPGVQPGLPASNC 189
>gi|239748202 PREDICTED: hypothetical protein XP_002346594 [Homo
sapiens]
Length = 224
Score = 31.2 bits (69), Expect = 0.59
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 60 AAHLSQWTRGRSRSHPGQGRSGESVEEVP 88
AAH R R RSHPG+G S E V P
Sbjct: 170 AAHGGHRARARKRSHPGEGASAERVLPKP 198
>gi|239742100 PREDICTED: hypothetical protein XP_002342435 [Homo
sapiens]
Length = 224
Score = 31.2 bits (69), Expect = 0.59
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 60 AAHLSQWTRGRSRSHPGQGRSGESVEEVP 88
AAH R R RSHPG+G S E V P
Sbjct: 170 AAHGGHRARARKRSHPGEGASAERVLPKP 198
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 31.2 bits (69), Expect = 0.59
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 16/68 (23%)
Query: 129 SLQLRPPQGRIPGPGTPVKYSEVVLDSEPKSQASGPEPELYASVCAQTRRARASFPDQAY 188
S L+ P G +PGPG Q + PEP L ASV + + R P QA
Sbjct: 723 SPSLKTPDGPVPGPG---------------PQGAAPEP-LGASVQRDSAQGRPCPPPQAP 766
Query: 189 ANSQPAAS 196
AN AS
Sbjct: 767 ANQPEGAS 774
>gi|169214011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 1.0
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 133 RPPQGRIPGPGTPVKYSEVVLDSEP-------KSQASGPEPELYASVCAQ 175
+P +GR GPG + + L S P K +A GPEP L + A+
Sbjct: 131 QPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180
>gi|239753746 PREDICTED: similar to BCL2-like 12 [Homo sapiens]
Length = 218
Score = 30.4 bits (67), Expect = 1.0
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 25/124 (20%)
Query: 65 QWTRGRSRSHPGQGRSGESVEEVPLYGNL-----HYLQTGRLSQDPEPD------QQDPT 113
Q R R + P G S EE+ L + +L+ G + P P+ Q++PT
Sbjct: 12 QVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPNPPRSPAQEEPT 71
Query: 114 -------------LGGPARAAEEVMCYTSLQLRPPQGRIPGPGTPVKYSEVVLDSEPKSQ 160
LG A +E + SL +RP G PGP TP Y+ V E + Q
Sbjct: 72 DFLSRLRRCLPCSLGRGAAPSESPRPW-SLPIRPCYGSEPGPATPDFYALVAQRLEQQEQ 130
Query: 161 ASGP 164
P
Sbjct: 131 LKSP 134
>gi|113428768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 1.0
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 133 RPPQGRIPGPGTPVKYSEVVLDSEP-------KSQASGPEPELYASVCAQ 175
+P +GR GPG + + L S P K +A GPEP L + A+
Sbjct: 131 QPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180
>gi|239748229 PREDICTED: hypothetical protein XP_002346597 [Homo
sapiens]
Length = 218
Score = 30.4 bits (67), Expect = 1.0
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 25/124 (20%)
Query: 65 QWTRGRSRSHPGQGRSGESVEEVPLYGNL-----HYLQTGRLSQDPEPD------QQDPT 113
Q R R + P G S EE+ L + +L+ G + P P+ Q++PT
Sbjct: 12 QVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPNPPRSPAQEEPT 71
Query: 114 -------------LGGPARAAEEVMCYTSLQLRPPQGRIPGPGTPVKYSEVVLDSEPKSQ 160
LG A +E + SL +RP G PGP TP Y+ V E + Q
Sbjct: 72 DFLSRLRRCLPCSLGRGAAPSESPRPW-SLPIRPCYGSEPGPATPDFYALVAQRLEQQEQ 130
Query: 161 ASGP 164
P
Sbjct: 131 LKSP 134
>gi|113428351 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 1.0
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 133 RPPQGRIPGPGTPVKYSEVVLDSEP-------KSQASGPEPELYASVCAQ 175
+P +GR GPG + + L S P K +A GPEP L + A+
Sbjct: 131 QPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180
>gi|239742130 PREDICTED: hypothetical protein XP_002342439 [Homo
sapiens]
Length = 218
Score = 30.4 bits (67), Expect = 1.0
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 25/124 (20%)
Query: 65 QWTRGRSRSHPGQGRSGESVEEVPLYGNL-----HYLQTGRLSQDPEPD------QQDPT 113
Q R R + P G S EE+ L + +L+ G + P P+ Q++PT
Sbjct: 12 QVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPNPPRSHAQEEPT 71
Query: 114 -------------LGGPARAAEEVMCYTSLQLRPPQGRIPGPGTPVKYSEVVLDSEPKSQ 160
LG A +E + SL +RP G PGP TP Y+ V E + Q
Sbjct: 72 DFLSRLRRCLPCSLGRGAAPSESPRPW-SLPIRPCYGSEPGPATPDFYALVAQRLEQQEQ 130
Query: 161 ASGP 164
P
Sbjct: 131 LKSP 134
>gi|15721939 metastatic lymph node 51 [Homo sapiens]
Length = 703
Score = 30.4 bits (67), Expect = 1.0
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 78 GRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPAR--AAEEVMCYTSLQLRPP 135
GRSGE+V+ Y + QT +DP P+ P LG P + AA E PP
Sbjct: 337 GRSGETVKHEISYRSRRLEQTS--VRDPSPEADAPVLGSPEKEEAASEPPAAAPDAAPPP 394
Query: 136 QGR 138
R
Sbjct: 395 PDR 397
>gi|19923352 NK3 homeobox 1 [Homo sapiens]
Length = 234
Score = 30.0 bits (66), Expect = 1.3
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 97 QTGRLS----QDPEPDQQDPTLGGPARA-AEEVMCYTSLQLRPPQGRIPGPGTPVKY-SE 150
Q GR S +DPEP+ + GG +RA A+ T + P + P ++
Sbjct: 42 QGGRTSSQRQRDPEPEPEPEPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGS 101
Query: 151 VVLDSEPKSQASGPEPELYASVCAQTRRARASF 183
+LDSE SG P L + +R+RA+F
Sbjct: 102 YLLDSE---NTSGALPRLPQTPKQPQKRSRAAF 131
>gi|54607137 T-cell receptor interacting molecule [Homo sapiens]
Length = 186
Score = 30.0 bits (66), Expect = 1.3
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 42 WGLWVLLG---AVTLLFLISLAAHLSQWTRGRSRSHPGQGRSGESVEEVPLYGNLHYLQT 98
WGL LLG ++L+F IS + + S S +E+ P+YGNL + +
Sbjct: 12 WGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDTPIYGNLDDMIS 71
Query: 99 GRLSQD--------PEPDQQDPTLGGPARAA--EEVMCYTSL 130
+ ++ PE P+ A E MCY SL
Sbjct: 72 EPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASL 113
>gi|31543392 peroxisome proliferator-activated receptor gamma,
coactivator 1 beta [Homo sapiens]
Length = 1023
Score = 29.6 bits (65), Expect = 1.7
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 133 RPPQGRIPGPGTPVKYSEVVLDSEPKSQASGPEPEL 168
RPP+ PG P EV + + PKS +GP P L
Sbjct: 376 RPPKDSQASPGRPSSVEEVRIAASPKS--TGPRPSL 409
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 29.6 bits (65), Expect = 1.7
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 18/88 (20%)
Query: 98 TGRLSQDPEPDQQDPTLGGPARAAEEVMCYTSLQLRP------------------PQGRI 139
+G + + PEP GP+ + + T + LR PQ R+
Sbjct: 1074 SGLVPEPPEPQGPAKVRPGPSPSCSQFFLLTPVPLRSEGNSSEFQGPPGLLSGPAPQKRM 1133
Query: 140 PGPGTPVKYSEVVLDSEPKSQASGPEPE 167
GPGTP + L P + PE E
Sbjct: 1134 GGPGTPRAPLRLALPGLPAALEGRPEEE 1161
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 29.6 bits (65), Expect = 1.7
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 108 DQQDPTLGGPARAAEEVMCYTSLQLRPPQG------RIPGPGTPVKYSEVVLDSEPKSQA 161
D QD LGG + L +RPP G +PGP P L +
Sbjct: 1483 DSQDLVLGGDVPISSIQATIAKLSIRPPGGLESPVASLPGPAEPPGLPPASLPESTPIPS 1542
Query: 162 SGPEP 166
S P P
Sbjct: 1543 SSPPP 1547
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo
sapiens]
Length = 2365
Score = 29.6 bits (65), Expect = 1.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 107 PDQQD-PTLGGPARAAEEVMCYTSLQLRPPQGRIPGPGTPVKYSEVVLDSEPKSQASGP 164
P Q D P P+R+ + + + S+ LRP QG P +P + ++ +P + GP
Sbjct: 913 PTQSDGPRTSSPSRSKQSEVPWASIALRPTQGDRPQTSSPSRPAQ----HDPPQSSFGP 967
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 29.6 bits (65), Expect = 1.7
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 102 SQDPEPDQQDPTLGGPARAAEEVMCYTSLQLRPPQGRIPGPGTPVKYSEVVLDSEPKSQA 161
+Q P P Q GPA A+ + PP G PGP P +V EP S
Sbjct: 50 AQTPVPPQPPQPPPGPASASGPGAAGPASS-PPPAGPGPGPALPAVRLSLVRLGEPDSAG 108
Query: 162 SGPEP 166
+G P
Sbjct: 109 AGEPP 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,255,914
Number of Sequences: 37866
Number of extensions: 498470
Number of successful extensions: 1706
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1665
Number of HSP's gapped (non-prelim): 90
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.