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Search of human proteins with 7657508
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657508 ring-box 1 [Homo sapiens]
(108 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657508 ring-box 1 [Homo sapiens] 241 7e-65
gi|7657522 ring finger protein 7 isoform 1 [Homo sapiens] 115 8e-27
gi|50409750 APC11 anaphase promoting complex subunit 11 isoform ... 82 7e-17
gi|50409789 APC11 anaphase promoting complex subunit 11 isoform ... 82 7e-17
gi|50409781 APC11 anaphase promoting complex subunit 11 isoform ... 82 7e-17
gi|50409804 APC11 anaphase promoting complex subunit 11 isoform ... 82 7e-17
gi|50409796 APC11 anaphase promoting complex subunit 11 isoform ... 82 7e-17
gi|18777675 APC11 anaphase promoting complex subunit 11 isoform ... 82 7e-17
gi|34304333 ring finger protein 7 isoform 3 [Homo sapiens] 57 2e-09
gi|197245452 ring finger protein 24 isoform 2 [Homo sapiens] 40 5e-04
gi|197245450 ring finger protein 24 isoform 1 [Homo sapiens] 40 5e-04
gi|6857791 ring finger protein 24 isoform 1 [Homo sapiens] 40 5e-04
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 38 0.002
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 38 0.002
gi|38045931 ring finger protein 122 [Homo sapiens] 38 0.002
gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens] 38 0.002
gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens] 38 0.002
gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens] 38 0.002
gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens] 38 0.002
gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens] 38 0.002
gi|50409810 APC11 anaphase promoting complex subunit 11 isoform ... 38 0.002
gi|7662486 ring finger protein 44 [Homo sapiens] 38 0.002
gi|33859668 Rabring 7 [Homo sapiens] 37 0.003
gi|5174653 ring finger protein 6 [Homo sapiens] 37 0.004
gi|34305295 ring finger protein 6 [Homo sapiens] 37 0.004
gi|34305293 ring finger protein 6 [Homo sapiens] 37 0.004
gi|21389515 ring finger protein 145 [Homo sapiens] 36 0.008
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 35 0.013
gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens] 35 0.013
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 34 0.022
>gi|7657508 ring-box 1 [Homo sapiens]
Length = 108
Score = 241 bits (616), Expect = 7e-65
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60
MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60
Query: 61 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108
ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 61 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108
>gi|7657522 ring finger protein 7 isoform 1 [Homo sapiens]
Length = 113
Score = 115 bits (288), Expect = 8e-27
Identities = 49/97 (50%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 11 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 70
SG+ SG G K F +KKWNAVA+W+WD+ D CAICR +MD C+ CQA E+C V
Sbjct: 20 SGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVV 75
Query: 71 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 107
WG CNH+FH C+S W+K CPL ++W Q+ G
Sbjct: 76 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112
>gi|50409750 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 82.4 bits (202), Expect = 7e-17
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 80
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 81 FHCISRWLKTRQV---CPLDNREWEFQK 105
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>gi|50409789 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 82.4 bits (202), Expect = 7e-17
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 80
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 81 FHCISRWLKTRQV---CPLDNREWEFQK 105
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>gi|50409781 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 82.4 bits (202), Expect = 7e-17
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 80
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 81 FHCISRWLKTRQV---CPLDNREWEFQK 105
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>gi|50409804 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 82.4 bits (202), Expect = 7e-17
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 80
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 81 FHCISRWLKTRQV---CPLDNREWEFQK 105
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>gi|50409796 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 82.4 bits (202), Expect = 7e-17
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 80
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 81 FHCISRWLKTRQV---CPLDNREWEFQK 105
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>gi|18777675 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 82.4 bits (202), Expect = 7e-17
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 80
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 81 FHCISRWLKTRQV---CPLDNREWEFQK 105
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>gi|34304333 ring finger protein 7 isoform 3 [Homo sapiens]
Length = 90
Score = 57.4 bits (137), Expect = 2e-09
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 11 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60
SG+ SG G K F +KKWNAVA+W+WD+ D CAICR + L ++ + N+
Sbjct: 20 SGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQMPVLDVKLKTNK 68
>gi|197245452 ring finger protein 24 isoform 2 [Homo sapiens]
Length = 169
Score = 39.7 bits (91), Expect = 5e-04
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 75 CNHAFHFHCISRWLKTRQVCPLDN 98
C HAFH C+ +WL+ R+VCPL N
Sbjct: 117 CKHAFHRKCLIKWLEVRKVCPLCN 140
>gi|197245450 ring finger protein 24 isoform 1 [Homo sapiens]
Length = 148
Score = 39.7 bits (91), Expect = 5e-04
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 75 CNHAFHFHCISRWLKTRQVCPLDN 98
C HAFH C+ +WL+ R+VCPL N
Sbjct: 96 CKHAFHRKCLIKWLEVRKVCPLCN 119
>gi|6857791 ring finger protein 24 isoform 1 [Homo sapiens]
Length = 148
Score = 39.7 bits (91), Expect = 5e-04
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 75 CNHAFHFHCISRWLKTRQVCPLDN 98
C HAFH C+ +WL+ R+VCPL N
Sbjct: 96 CKHAFHRKCLIKWLEVRKVCPLCN 119
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 38.1 bits (87), Expect = 0.002
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 75 CNHAFHFHCISRWLKTRQVCPLDNR 99
C+H +H HCI RWL CP+ R
Sbjct: 588 CSHEYHVHCIDRWLSENSTCPICRR 612
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 38.1 bits (87), Expect = 0.002
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 75 CNHAFHFHCISRWLKTRQVCPLDNR 99
C+H +H HCI RWL CP+ R
Sbjct: 588 CSHEYHVHCIDRWLSENSTCPICRR 612
>gi|38045931 ring finger protein 122 [Homo sapiens]
Length = 155
Score = 38.1 bits (87), Expect = 0.002
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 75 CNHAFHFHCISRWLKTRQVCPLDNR 99
C HAFH C+ +WL+ R VCP+ N+
Sbjct: 111 CQHAFHRKCLVKWLEVRCVCPMCNK 135
>gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 37.7 bits (86), Expect = 0.002
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 75 CNHAFHFHCISRWLKTRQVCPL 96
CNH FH C+ +WLK + CP+
Sbjct: 398 CNHEFHAKCVDKWLKANRTCPI 419
>gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 37.7 bits (86), Expect = 0.002
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 75 CNHAFHFHCISRWLKTRQVCPL 96
CNH FH C+ +WLK + CP+
Sbjct: 398 CNHEFHAKCVDKWLKANRTCPI 419
>gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens]
Length = 465
Score = 37.7 bits (86), Expect = 0.002
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 75 CNHAFHFHCISRWLKTRQVCPL 96
CNH FH C+ +WLK + CP+
Sbjct: 431 CNHEFHAKCVDKWLKANRTCPI 452
>gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 37.7 bits (86), Expect = 0.002
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 75 CNHAFHFHCISRWLKTRQVCPL 96
CNH FH C+ +WLK + CP+
Sbjct: 398 CNHEFHAKCVDKWLKANRTCPI 419
>gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens]
Length = 515
Score = 37.7 bits (86), Expect = 0.002
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 75 CNHAFHFHCISRWLKTRQVCPL 96
CNH FH C+ +WLK + CP+
Sbjct: 481 CNHEFHAKCVDKWLKANRTCPI 502
>gi|50409810 APC11 anaphase promoting complex subunit 11 isoform 1
[Homo sapiens]
Length = 196
Score = 37.7 bits (86), Expect = 0.002
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56
+ ++K WN VA W W +NC ICR C +C
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDC 37
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 37.7 bits (86), Expect = 0.002
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 75 CNHAFHFHCISRWLKTRQVCPL 96
CNH FH C+ +WLK + CP+
Sbjct: 398 CNHEFHTKCVDKWLKANRTCPI 419
>gi|33859668 Rabring 7 [Homo sapiens]
Length = 304
Score = 37.0 bits (84), Expect = 0.003
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 50 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 96
+D+ +EC + T EE V CNH FH CI WL+ CP+
Sbjct: 222 VDMGLECPVCKEDYTVEE-EVRQLPCNHFFHSSCIVPWLELHDTCPV 267
>gi|5174653 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 36.6 bits (83), Expect = 0.004
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 75 CNHAFHFHCISRWLKTRQVCPL 96
C H FH HCI RWL CP+
Sbjct: 650 CMHEFHIHCIDRWLSENCTCPI 671
>gi|34305295 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 36.6 bits (83), Expect = 0.004
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 75 CNHAFHFHCISRWLKTRQVCPL 96
C H FH HCI RWL CP+
Sbjct: 650 CMHEFHIHCIDRWLSENCTCPI 671
>gi|34305293 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 36.6 bits (83), Expect = 0.004
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 75 CNHAFHFHCISRWLKTRQVCPL 96
C H FH HCI RWL CP+
Sbjct: 650 CMHEFHIHCIDRWLSENCTCPI 671
>gi|21389515 ring finger protein 145 [Homo sapiens]
Length = 691
Score = 35.8 bits (81), Expect = 0.008
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 51 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 96
D+C C + SA C+ H FH C+ +WL ++ CPL
Sbjct: 563 DICAICYQDMKSAVITPCS-------HFFHAGCLKKWLYVQETCPL 601
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 35.0 bits (79), Expect = 0.013
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 43 AICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 102
A+ RN + LC+E + +AT C H F + CI+ W ++ CPL ++
Sbjct: 286 AVSRNPLCTLCLE-ERRHPTATP---------CGHLFCWECITAWCSSKAECPLCREKFP 335
Query: 103 FQK 105
QK
Sbjct: 336 PQK 338
>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
Length = 326
Score = 35.0 bits (79), Expect = 0.013
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 43 AICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 102
A+ RN + LC+E + +AT C H F + CI+ W ++ CPL ++
Sbjct: 266 AVSRNPLCTLCLE-ERRHPTATP---------CGHLFCWECITAWCSSKAECPLCREKFP 315
Query: 103 FQK 105
QK
Sbjct: 316 PQK 318
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 34.3 bits (77), Expect = 0.022
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 52 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 102
+C+ C + E C NH F CI +W +T CP+D + ++
Sbjct: 43 ICLNCLLEKEVGFPESC-------NHVFCMTCILKWAETLASCPIDRKPFQ 86
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.132 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,665,011
Number of Sequences: 37866
Number of extensions: 181185
Number of successful extensions: 697
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 134
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.