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Search of human proteins with 7657176
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657176 canopy 2 homolog [Homo sapiens]
(182 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657176 canopy 2 homolog [Homo sapiens] 374 e-104
gi|157042800 canopy 1 homolog [Homo sapiens] 70 1e-12
gi|22749479 canopy 4 homolog [Homo sapiens] 46 2e-05
gi|46249351 homer 2 isoform 2 [Homo sapiens] 37 0.012
gi|46249349 homer 2 isoform 1 [Homo sapiens] 37 0.012
gi|33942072 trinucleotide repeat containing 5 [Homo sapiens] 37 0.012
gi|110349797 homer 2 isoform 4 [Homo sapiens] 33 0.14
gi|110349794 homer 2 isoform 3 [Homo sapiens] 33 0.14
gi|16975496 cortactin binding protein 2 [Homo sapiens] 29 2.0
gi|116812565 zinc finger protein, subfamily 1A, 5 [Homo sapiens] 29 2.6
gi|27436948 lamin A/C isoform 3 [Homo sapiens] 28 5.7
gi|5031875 lamin A/C isoform 2 [Homo sapiens] 28 5.7
gi|27436946 lamin A/C isoform 1 precursor [Homo sapiens] 28 5.7
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 28 5.7
gi|199562283 retrotransposon-like 1 [Homo sapiens] 27 9.7
gi|51477723 testis expressed sequence 11 isoform 2 [Homo sapiens] 27 9.7
gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens] 27 9.7
gi|239753006 PREDICTED: similar to eukaryotic translation initia... 27 9.7
gi|239747538 PREDICTED: similar to eukaryotic translation initia... 27 9.7
gi|239741414 PREDICTED: similar to eukaryotic translation initia... 27 9.7
gi|5032133 eukaryotic translation initiation factor 1 [Homo sapi... 27 9.7
gi|5031711 translation factor sui1 homolog [Homo sapiens] 27 9.7
>gi|7657176 canopy 2 homolog [Homo sapiens]
Length = 182
Score = 374 bits (960), Expect = e-104
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINP 60
MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINP
Sbjct: 1 MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINP 60
Query: 61 DGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDL 120
DGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDL
Sbjct: 61 DGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDL 120
Query: 121 QGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHD 180
QGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHD
Sbjct: 121 QGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHD 180
Query: 181 EL 182
EL
Sbjct: 181 EL 182
>gi|157042800 canopy 1 homolog [Homo sapiens]
Length = 92
Score = 70.1 bits (170), Expect = 1e-12
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 89 MKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDEL 148
M +Y + DP T + + R R G+ + + + SD LKFACE+I+EEYEDE+
Sbjct: 1 MNDYKLEEDPVTKERTFKRFAPRKGDKIYQEFKKLYFYSDAYRPLKFACETIIEEYEDEI 60
Query: 149 IEFFSREADNVKDKLCSKRTDLCDHALHISHDEL 182
++E + DKLCS+++DLC+ + +H EL
Sbjct: 61 SSLIAQETHYLADKLCSEKSDLCETS--ANHTEL 92
>gi|22749479 canopy 4 homolog [Homo sapiens]
Length = 248
Score = 46.2 bits (108), Expect = 2e-05
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 24/154 (15%)
Query: 28 CGACRALVDELEWEIAQVD-PKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEIC 86
C C+ L EL+ E+++ ++ +++G D + VPY+ SE L E LE +C
Sbjct: 38 CEVCKLLSTELQAELSRTGRSREVLELGQVL---DTGKRKRHVPYSVSETRLEEALENLC 94
Query: 87 DRMKEYGEQIDPSTHRKNYVRVVGRNGES----SELDLQGIRIDSDIS-----------G 131
+R+ +Y + RK +R ++ L +G+++D I
Sbjct: 95 ERILDYSVHAE----RKGSLRYAKGQSQTMATLKGLVQKGVKVDLGIPLELWDEPSVEVT 150
Query: 132 TLKFACESIVEEYEDELIE-FFSREADNVKDKLC 164
LK CE+++EE+ED + + +F + +++ LC
Sbjct: 151 YLKKQCETMLEEFEDIVGDWYFHHQEQPLQNFLC 184
>gi|46249351 homer 2 isoform 2 [Homo sapiens]
Length = 354
Score = 36.6 bits (83), Expect = 0.012
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 78 LTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFAC 137
L ++E+ ++ E + + +T K + + E +L+ +R S+I L C
Sbjct: 225 LRNKIDELEEQCSEINREKEKNTQLKRRIEELEAELREKETELKDLRKQSEIIPQLMSEC 284
Query: 138 ESIVEEYEDELIEFFSREADNVKDKLCSKRTDL 170
E Y E +E R+ N++DK+ S +TD+
Sbjct: 285 E-----YVSEKLEAAERDNQNLEDKVRSLKTDI 312
>gi|46249349 homer 2 isoform 1 [Homo sapiens]
Length = 343
Score = 36.6 bits (83), Expect = 0.012
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 78 LTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFAC 137
L ++E+ ++ E + + +T K + + E +L+ +R S+I L C
Sbjct: 214 LRNKIDELEEQCSEINREKEKNTQLKRRIEELEAELREKETELKDLRKQSEIIPQLMSEC 273
Query: 138 ESIVEEYEDELIEFFSREADNVKDKLCSKRTDL 170
E Y E +E R+ N++DK+ S +TD+
Sbjct: 274 E-----YVSEKLEAAERDNQNLEDKVRSLKTDI 301
>gi|33942072 trinucleotide repeat containing 5 [Homo sapiens]
Length = 278
Score = 36.6 bits (83), Expect = 0.012
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 28 CGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICD 87
C C+ + EL+ + K + + I Q V Y +S+ L E+ E IC
Sbjct: 49 CEVCKYVAVELKSAFEETGKTKEVIGTGYGIL---DQKASGVKYTKSDLRLIEVTETICK 105
Query: 88 RMKEYGEQIDPSTHRKNYVRVVGRNGES-SELDLQGIRIDSDIS-----------GTLKF 135
R+ +Y + T + + + E+ L +G+++ DI LK
Sbjct: 106 RLLDYSLHKE-RTGSNRFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKK 164
Query: 136 ACESIVEEYEDELIEFF-SREADNVKDKLCS 165
C+ +VEE+E+ + +++ + + +++ + LC+
Sbjct: 165 QCDVLVEEFEEVIEDWYRNHQEEDLTEFLCA 195
>gi|110349797 homer 2 isoform 4 [Homo sapiens]
Length = 299
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 81 LLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESI 140
L + + E + + +T K + + E +L+ +R S+I L CE
Sbjct: 173 LTQSAANVKNEINREKEKNTQLKRRIEELEAELREKETELKDLRKQSEIIPQLMSECE-- 230
Query: 141 VEEYEDELIEFFSREADNVKDKLCSKRTDL 170
Y E +E R+ N++DK+ S +TD+
Sbjct: 231 ---YVSEKLEAAERDNQNLEDKVRSLKTDI 257
>gi|110349794 homer 2 isoform 3 [Homo sapiens]
Length = 288
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 81 LLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESI 140
L + + E + + +T K + + E +L+ +R S+I L CE
Sbjct: 162 LTQSAANVKNEINREKEKNTQLKRRIEELEAELREKETELKDLRKQSEIIPQLMSECE-- 219
Query: 141 VEEYEDELIEFFSREADNVKDKLCSKRTDL 170
Y E +E R+ N++DK+ S +TD+
Sbjct: 220 ---YVSEKLEAAERDNQNLEDKVRSLKTDI 246
>gi|16975496 cortactin binding protein 2 [Homo sapiens]
Length = 1663
Score = 29.3 bits (64), Expect = 2.0
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 36 DELEWEIAQVDPKKT---IQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEY 92
+ELE E++ + T QM D + + R EAH T+L EEI D+M++
Sbjct: 207 NELEEELSAEKRRSTEMEAQMEKQLSEFDTEREQLRAKLNREEAHTTDLKEEI-DKMRKM 265
Query: 93 GEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACES-IVEEYEDEL 148
EQ+ + K + + + + + L I + ++ + T AC++ +V E D +
Sbjct: 266 IEQLKRGSDSKPSLSLPRK---TKDRRLVSISVGTEGTVTRSVACQTDLVTENADHM 319
>gi|116812565 zinc finger protein, subfamily 1A, 5 [Homo sapiens]
Length = 419
Score = 28.9 bits (63), Expect = 2.6
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 84 EICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEE 143
E D +K++ E + TH N + +G+ LQG D D +G + E ++E
Sbjct: 7 EPLDFVKDFQEYLTQQTHHVNMISG-SVSGDKEAEALQGAGTDGDQNGLDHPSVEVSLDE 65
Query: 144 YEDELIEFFSREAD-NVKDKLCS 165
L++ F R D +K + C+
Sbjct: 66 NSGMLVDGFERTFDGKLKCRYCN 88
>gi|27436948 lamin A/C isoform 3 [Homo sapiens]
Length = 634
Score = 27.7 bits (60), Expect = 5.7
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 74 SEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTL 133
+E L + EE+ + Y E++ + R V NG+ E + + +D L
Sbjct: 193 AENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRL----ADALQEL 248
Query: 134 KFACESIVEEYEDELIEFFSREADNVK 160
+ E VE+Y+ EL + +S + DN +
Sbjct: 249 RAQHEDQVEQYKKELEKTYSAKLDNAR 275
>gi|5031875 lamin A/C isoform 2 [Homo sapiens]
Length = 572
Score = 27.7 bits (60), Expect = 5.7
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 74 SEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTL 133
+E L + EE+ + Y E++ + R V NG+ E + + +D L
Sbjct: 193 AENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRL----ADALQEL 248
Query: 134 KFACESIVEEYEDELIEFFSREADNVK 160
+ E VE+Y+ EL + +S + DN +
Sbjct: 249 RAQHEDQVEQYKKELEKTYSAKLDNAR 275
>gi|27436946 lamin A/C isoform 1 precursor [Homo sapiens]
Length = 664
Score = 27.7 bits (60), Expect = 5.7
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 74 SEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTL 133
+E L + EE+ + Y E++ + R V NG+ E + + +D L
Sbjct: 193 AENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRL----ADALQEL 248
Query: 134 KFACESIVEEYEDELIEFFSREADNVK 160
+ E VE+Y+ EL + +S + DN +
Sbjct: 249 RAQHEDQVEQYKKELEKTYSAKLDNAR 275
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 27.7 bits (60), Expect = 5.7
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 34 LVDELEWEIAQVDPKKTIQMG------SFRINPDGSQSVVEVPYARSEAHLTELLEEICD 87
+VD +E PK + ++G S +P ++ VP+ SEA T+ L+++
Sbjct: 824 VVDGIEDGCGSDQPKFSFRVGQSGPECSSSPSPGPESGLLTVPHGPSEARNTDTLDKLRQ 883
Query: 88 RMKEYGEQI 96
+ E EQ+
Sbjct: 884 AVTELSEQV 892
>gi|199562283 retrotransposon-like 1 [Homo sapiens]
Length = 1358
Score = 26.9 bits (58), Expect = 9.7
Identities = 18/98 (18%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 41 EIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPST 100
++++ +P + Q G + D S++ E P + ++E +EY + D T
Sbjct: 586 DLSESEPSELQQAG----DSDHSETFYECPSTAPWEPVGARMQERARLQEEYWDLQDMLT 641
Query: 101 HRKNYVRVVGRNGES-------SELDLQGIRIDSDISG 131
+R++Y++++ + ++L+L+G ++ ++G
Sbjct: 642 NRQDYIQMIPELFDQLHGAEWFTKLELRGTIVEESVNG 679
>gi|51477723 testis expressed sequence 11 isoform 2 [Homo sapiens]
Length = 925
Score = 26.9 bits (58), Expect = 9.7
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 105 YVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEE 143
YV+++ R+ ++L ++ I ++SD L + ES V +
Sbjct: 141 YVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQ 179
>gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens]
Length = 940
Score = 26.9 bits (58), Expect = 9.7
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 105 YVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEE 143
YV+++ R+ ++L ++ I ++SD L + ES V +
Sbjct: 156 YVKLIQRSSPEADLTMEKITVESDHFRVLSYQAESAVAQ 194
>gi|239753006 PREDICTED: similar to eukaryotic translation
initiation factor 1 [Homo sapiens]
Length = 136
Score = 26.9 bits (58), Expect = 9.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 105 YVRVVGRNGESSELDLQGIRIDSDISGTLK----FACESIVEEYED--ELIEFFSREADN 158
++R+ RNG + +QGI D D +K FAC V E+ + E+I+ + +N
Sbjct: 56 HIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGDQCNN 115
Query: 159 V 159
+
Sbjct: 116 I 116
>gi|239747538 PREDICTED: similar to eukaryotic translation
initiation factor 1 [Homo sapiens]
Length = 136
Score = 26.9 bits (58), Expect = 9.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 105 YVRVVGRNGESSELDLQGIRIDSDISGTLK----FACESIVEEYED--ELIEFFSREADN 158
++R+ RNG + +QGI D D +K FAC V E+ + E+I+ + +N
Sbjct: 56 HIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGDQCNN 115
Query: 159 V 159
+
Sbjct: 116 I 116
>gi|239741414 PREDICTED: similar to eukaryotic translation
initiation factor 1 [Homo sapiens]
Length = 136
Score = 26.9 bits (58), Expect = 9.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 105 YVRVVGRNGESSELDLQGIRIDSDISGTLK----FACESIVEEYED--ELIEFFSREADN 158
++R+ RNG + +QGI D D +K FAC V E+ + E+I+ + +N
Sbjct: 56 HIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGDQCNN 115
Query: 159 V 159
+
Sbjct: 116 I 116
>gi|5032133 eukaryotic translation initiation factor 1 [Homo
sapiens]
Length = 113
Score = 26.9 bits (58), Expect = 9.7
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 105 YVRVVGRNGESSELDLQGIRIDSDISGTL-----KFACESIVEEYED--ELIEFFSREAD 157
++R+ RNG + +QGI D D + KFAC V E+ + E+I+ +
Sbjct: 32 HIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRK 91
Query: 158 NV 159
N+
Sbjct: 92 NI 93
>gi|5031711 translation factor sui1 homolog [Homo sapiens]
Length = 113
Score = 26.9 bits (58), Expect = 9.7
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 105 YVRVVGRNGESSELDLQGIRIDSDISGTL-----KFACESIVEEYED--ELIEFFSREAD 157
++R+ RNG + +QGI D D + KFAC V E+ + E+I+ +
Sbjct: 32 HIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRK 91
Query: 158 NV 159
N+
Sbjct: 92 NI 93
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,898,370
Number of Sequences: 37866
Number of extensions: 274098
Number of successful extensions: 901
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 22
length of query: 182
length of database: 18,247,518
effective HSP length: 96
effective length of query: 86
effective length of database: 14,612,382
effective search space: 1256664852
effective search space used: 1256664852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.