Guide to the Human Genome
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Name: LOC730144 Sequence: fasta or formatted (136aa) NCBI GI: 239741414
Description:

PREDICTED: similar to eukaryotic translation initiation factor 1

Referenced in:

Translation Factors

Other entries for this name:
alt mRNA [136aa] PREDICTED: similar to eukaryotic translation initiation factor 1
alt mRNA [136aa] PREDICTED: similar to eukaryotic translation initiation factor 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6          9           1
 C cysteine            2.9          4           1
 D aspartate           8.1         11           2
 E glutamate           6.6          9           2
 F phenylalanine       5.1          7           1
 G glycine             5.9          8           1
 H histidine           2.9          4           1
 I isoleucine          6.6          9           1
 K lysine             10.3         14           3
 L leucine             8.8         12           2
 M methionine          0.7          1           1
 N asparagine          4.4          6           2
 P proline             2.9          4           1
 Q glutamine           6.6          9           2
 R arginine            2.2          3           1
 S serine              3.7          5           1
 T threonine           5.1          7           2
 V valine              6.6          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to eukaryotic translation initia... 
LOC730144             1.000   PREDICTED: similar to eukaryotic translation initia...
LOC730144             1.000   PREDICTED: similar to eukaryotic translation initia...
EIF1                  0.720   eukaryotic translation initiation factor 1 
EIF1B                 0.673   translation factor sui1 homolog 
PADI4                 0.008   peptidyl arginine deiminase, type IV 
CNPY2                 0.008   canopy 2 homolog 
ZNF592                0.008   zinc finger protein 592 
ABCC2                 0.004   ATP-binding cassette, sub-family C (CFTR/MRP), member...
HLA-DMA               0.004   major histocompatibility complex, class II, DM alpha...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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