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Search of human proteins with 7656936
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7656936 zinc finger, HIT domain containing 2 [Homo sapiens]
(403 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7656936 zinc finger, HIT domain containing 2 [Homo sapiens] 827 0.0
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 39 0.008
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 39 0.008
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 39 0.008
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 39 0.008
gi|26051240 tumor necrosis factor, alpha-induced protein 2 [Homo... 38 0.014
gi|194272140 dendrin [Homo sapiens] 37 0.024
gi|194272180 plexin B1 [Homo sapiens] 36 0.054
gi|40254442 plexin B1 [Homo sapiens] 36 0.054
gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens] 36 0.054
gi|217416372 coiled-coil domain containing 142 [Homo sapiens] 36 0.054
gi|5453617 zinc finger, HIT domain containing 1 [Homo sapiens] 35 0.092
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens] 35 0.092
gi|9966885 tumor endothelial marker 1 precursor [Homo sapiens] 35 0.16
gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens] 35 0.16
gi|169164558 PREDICTED: hypothetical protein [Homo sapiens] 34 0.21
gi|239748011 PREDICTED: hypothetical protein [Homo sapiens] 34 0.21
gi|169163356 PREDICTED: hypothetical protein [Homo sapiens] 34 0.21
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap... 34 0.21
gi|149944548 neurobeachin-like 2 [Homo sapiens] 33 0.35
gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens] 33 0.35
gi|148762978 similar to CG15216-PA [Homo sapiens] 33 0.46
gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens] 32 1.0
gi|56788364 tubulin, gamma complex associated protein 6 [Homo sa... 32 1.0
gi|20149643 zinc finger, HIT type 6 [Homo sapiens] 32 1.3
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 31 1.7
gi|239754987 PREDICTED: hypothetical protein [Homo sapiens] 31 1.7
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 31 1.7
gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens] 31 1.7
gi|222352143 TBC1 domain family, member 2 [Homo sapiens] 31 2.3
>gi|7656936 zinc finger, HIT domain containing 2 [Homo sapiens]
Length = 403
Score = 827 bits (2135), Expect = 0.0
Identities = 403/403 (100%), Positives = 403/403 (100%)
Query: 1 MEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGTCAENFYRDQVLGELRGCSAP 60
MEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGTCAENFYRDQVLGELRGCSAP
Sbjct: 1 MEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGTCAENFYRDQVLGELRGCSAP 60
Query: 61 PSRLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLAPGEKAAFERLLSRGEAG 120
PSRLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLAPGEKAAFERLLSRGEAG
Sbjct: 61 PSRLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLAPGEKAAFERLLSRGEAG 120
Query: 121 RLLPPWRPWWWNRGAGPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEPAAAERV 180
RLLPPWRPWWWNRGAGPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEPAAAERV
Sbjct: 121 RLLPPWRPWWWNRGAGPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEPAAAERV 180
Query: 181 LGDVPGACTPVVPTRIPAIVSLSRGPVSPLVRFQLPNVLFAYAHTLALYHGGDDALLSDF 240
LGDVPGACTPVVPTRIPAIVSLSRGPVSPLVRFQLPNVLFAYAHTLALYHGGDDALLSDF
Sbjct: 181 LGDVPGACTPVVPTRIPAIVSLSRGPVSPLVRFQLPNVLFAYAHTLALYHGGDDALLSDF 240
Query: 241 CATLLGVSGALGAQQVFASAEEALQAAAHVLEAGEHPPGPLGTRGAMHEVARILLGEGPT 300
CATLLGVSGALGAQQVFASAEEALQAAAHVLEAGEHPPGPLGTRGAMHEVARILLGEGPT
Sbjct: 241 CATLLGVSGALGAQQVFASAEEALQAAAHVLEAGEHPPGPLGTRGAMHEVARILLGEGPT 300
Query: 301 NQKGYTLAALGDLAQTLGRARKQAVAREERDHLYRARKKCQFLLAWTNENEAALTPLALD 360
NQKGYTLAALGDLAQTLGRARKQAVAREERDHLYRARKKCQFLLAWTNENEAALTPLALD
Sbjct: 301 NQKGYTLAALGDLAQTLGRARKQAVAREERDHLYRARKKCQFLLAWTNENEAALTPLALD 360
Query: 361 CARAHQAHAVVAEEVAALTGELERLWGGPVPPAPRTLIEELPS 403
CARAHQAHAVVAEEVAALTGELERLWGGPVPPAPRTLIEELPS
Sbjct: 361 CARAHQAHAVVAEEVAALTGELERLWGGPVPPAPRTLIEELPS 403
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 38.9 bits (89), Expect = 0.008
Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 24/149 (16%)
Query: 63 RLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLAPGEKAAFERLLSRGEAGRL 122
R A R ++++E E + AG S GP+ L+GL L+ +++ ER
Sbjct: 524 RQERAKEREKRRQERERKERGAGASGGPSTDPLAGLV--LSDNDRSLLERWTRMA----- 576
Query: 123 LPPWRPWWWNRGAGPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEPAAAERVLG 182
R A P L AP + P PP V + +P +A G
Sbjct: 577 ----------RPAAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSG 626
Query: 183 DVP-GACTPVVPTRIPAIVSLSRGPVSPL 210
VP AC P P P GP P+
Sbjct: 627 PVPQPACPPPGPAPHPT------GPPGPI 649
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 38.9 bits (89), Expect = 0.008
Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 24/149 (16%)
Query: 63 RLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLAPGEKAAFERLLSRGEAGRL 122
R A R ++++E E + AG S GP+ L+GL L+ +++ ER
Sbjct: 524 RQERAKEREKRRQERERKERGAGASGGPSTDPLAGLV--LSDNDRSLLERWTRMA----- 576
Query: 123 LPPWRPWWWNRGAGPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEPAAAERVLG 182
R A P L AP + P PP V + +P +A G
Sbjct: 577 ----------RPAAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSG 626
Query: 183 DVP-GACTPVVPTRIPAIVSLSRGPVSPL 210
VP AC P P P GP P+
Sbjct: 627 PVPQPACPPPGPAPHPT------GPPGPI 649
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 38.9 bits (89), Expect = 0.008
Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 24/149 (16%)
Query: 63 RLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLAPGEKAAFERLLSRGEAGRL 122
R A R ++++E E + AG S GP+ L+GL L+ +++ ER
Sbjct: 524 RQERAKEREKRRQERERKERGAGASGGPSTDPLAGLV--LSDNDRSLLERWTRMA----- 576
Query: 123 LPPWRPWWWNRGAGPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEPAAAERVLG 182
R A P L AP + P PP V + +P +A G
Sbjct: 577 ----------RPAAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSG 626
Query: 183 DVP-GACTPVVPTRIPAIVSLSRGPVSPL 210
VP AC P P P GP P+
Sbjct: 627 PVPQPACPPPGPAPHPT------GPPGPI 649
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 38.9 bits (89), Expect = 0.008
Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 24/149 (16%)
Query: 63 RLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLAPGEKAAFERLLSRGEAGRL 122
R A R ++++E E + AG S GP+ L+GL L+ +++ ER
Sbjct: 385 RQERAKEREKRRQERERKERGAGASGGPSTDPLAGLV--LSDNDRSLLERWTRMA----- 437
Query: 123 LPPWRPWWWNRGAGPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEPAAAERVLG 182
R A P L AP + P PP V + +P +A G
Sbjct: 438 ----------RPAAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSG 487
Query: 183 DVP-GACTPVVPTRIPAIVSLSRGPVSPL 210
VP AC P P P GP P+
Sbjct: 488 PVPQPACPPPGPAPHPT------GPPGPI 510
>gi|26051240 tumor necrosis factor, alpha-induced protein 2 [Homo
sapiens]
Length = 654
Score = 38.1 bits (87), Expect = 0.014
Identities = 35/87 (40%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 47 RDQVLGELRG-CSAPPSRLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSG-------- 97
RDQVLG LR APP RL AL + +Q E ED A +GP GL+
Sbjct: 133 RDQVLGVLRRPLEAPPERLRQALAVVAEQ-EREDRQAAA---AGPGTSGLAATRPRRWLQ 188
Query: 98 LWERLAPGEKAAFERLLSRGEAGRLLP 124
LW R +AA ER+ R AG +P
Sbjct: 189 LWRRGV--AEAAEERMGQRPAAGAEVP 213
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 37.4 bits (85), Expect = 0.024
Identities = 42/148 (28%), Positives = 54/148 (36%), Gaps = 27/148 (18%)
Query: 51 LGELRGCSAP--PSRLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLAPGEKA 108
+ +L G AP P RLA R R + + +PG A +G W PG +
Sbjct: 153 VAQLAGLPAPLRPERLAPVGRAPRPSAQPQSDPGSA----------WAGPWGGRRPGPPS 202
Query: 109 AFERLLSRGEAGRLLPPWRPWWWNRG---------AGPQLLEELDNAPGSDAAELELAPA 159
LL RG AG P R W+R GP PG+ APA
Sbjct: 203 YEAHLLLRGSAG-TAPRRR---WDRPPPYVAPPSYEGPHRTLGTKRGPGNSQVPTSSAPA 258
Query: 160 RTPPDSVKDASAAEPAAAERVLGDVPGA 187
TP + D + R+ DV GA
Sbjct: 259 ATPART--DGGRTKKRLDPRIYRDVLGA 284
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 36.2 bits (82), Expect = 0.054
Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 21/148 (14%)
Query: 79 DEPGEAGLSSGP--APGGLSGLWERLAPGEKAAFERL----LSRGEAGRLLPPWRPWWWN 132
D P G S P AP L+ P E A +S G + LL PW PW
Sbjct: 683 DPPARGGPSPSPPTAPKALATPAPDTLPVEPGAPSTATASDISPGASPSLLSPWGPW--- 739
Query: 133 RGAGPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEPAAAERVLGDVPG--ACTP 190
G+G ++PGS + L P +PP A PA + P +P
Sbjct: 740 AGSGS------ISSPGSTGSPLHEEP--SPPSPQNGPGTAVPAPTDFRPSATPEDLLASP 791
Query: 191 VVPTRIPAIVSLSRGP--VSPLVRFQLP 216
+ P+ + A+ GP + P V LP
Sbjct: 792 LSPSEVAAVPPADPGPEALHPTVPLDLP 819
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 36.2 bits (82), Expect = 0.054
Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 21/148 (14%)
Query: 79 DEPGEAGLSSGP--APGGLSGLWERLAPGEKAAFERL----LSRGEAGRLLPPWRPWWWN 132
D P G S P AP L+ P E A +S G + LL PW PW
Sbjct: 683 DPPARGGPSPSPPTAPKALATPAPDTLPVEPGAPSTATASDISPGASPSLLSPWGPW--- 739
Query: 133 RGAGPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEPAAAERVLGDVPG--ACTP 190
G+G ++PGS + L P +PP A PA + P +P
Sbjct: 740 AGSGS------ISSPGSTGSPLHEEP--SPPSPQNGPGTAVPAPTDFRPSATPEDLLASP 791
Query: 191 VVPTRIPAIVSLSRGP--VSPLVRFQLP 216
+ P+ + A+ GP + P V LP
Sbjct: 792 LSPSEVAAVPPADPGPEALHPTVPLDLP 819
>gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens]
Length = 155
Score = 36.2 bits (82), Expect = 0.054
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 15 VQPARYTCPRCNAPYCSLRCYRTH 38
++ +Y CP C PYCS+ C+R H
Sbjct: 15 LEKPKYRCPACRVPYCSVVCFRKH 38
>gi|217416372 coiled-coil domain containing 142 [Homo sapiens]
Length = 743
Score = 36.2 bits (82), Expect = 0.054
Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 16/158 (10%)
Query: 153 ELELAPARTPPDSVKDASAAEPAAAERVLGDVPGACTPVVPTRIPAIVSLSRGPVSPLVR 212
+L+L P++ + EP R +G V+ ++ A L R P SP +
Sbjct: 143 DLQLHPSQGAVLRIGPGETLEPLLLARPIGLAAQCLEAVIEMQLRA---LGREPASPGLS 199
Query: 213 FQLPNVLFAYA--HTL---ALYHGGDDALLSDFCATLLGVSGALGAQQVFASAEEALQAA 267
QL +LFA HTL AL H A L ++G G QV + +EALQ +
Sbjct: 200 SQLAELLFALPAYHTLQRKALSHVPGAARPFPTSRVLRLLTGERGC-QVASRLDEALQGS 258
Query: 268 A-------HVLEAGEHPPGPLGTRGAMHEVARILLGEG 298
A E G+ PG LG G + A LG G
Sbjct: 259 ALRDQLRRRCQEEGDLLPGLLGLVGGVAGSASCGLGLG 296
>gi|5453617 zinc finger, HIT domain containing 1 [Homo sapiens]
Length = 154
Score = 35.4 bits (80), Expect = 0.092
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Query: 7 CGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 38
CGF P+ YTC C A YC++RC TH
Sbjct: 120 CGF-------PSPYTCVSCGARYCTVRCLGTH 144
>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
Length = 739
Score = 35.4 bits (80), Expect = 0.092
Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 21/120 (17%)
Query: 102 LAPGEKAAFERLLSRGEAGRLLPPWRPWWWNRGAGPQLLEELDNA----PGSDAAELELA 157
LA GE ++ LL G G PP +P PQ E + P + LE A
Sbjct: 348 LALGEASSLGPLLLTGGGGA--PPPQP-------SPQGASETKTSLVLDPQTGEVRLEEA 398
Query: 158 PARTPPDSVKDASAAEPAAAERVLGD----VPGACT----PVVPTRIPAIVSLSRGPVSP 209
+ P +A PA E VLG VPG T P+ P +PA+ + P+SP
Sbjct: 399 QSEAPETKGAQVAAPGPALGEEVLGPLAQVVPGPPTAATFPLPPGPVPAVAAPQVVPLSP 458
>gi|9966885 tumor endothelial marker 1 precursor [Homo sapiens]
Length = 757
Score = 34.7 bits (78), Expect = 0.16
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 133 RGAGPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEPAAAERVLGDVPGACTPVV 192
R AG Q L P + A + A+ PP + DA A + P++
Sbjct: 537 RVAGTQTTTHLPGIPPNHAPLVTTLGAQLPPQA-PDALVLRTQATQ----------LPII 585
Query: 193 PTRIPAIVSLSRGPVSPLVRFQLP 216
PT P++ + SR PVSP + +P
Sbjct: 586 PTAQPSLTTTSRSPVSPAHQISVP 609
>gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens]
Length = 492
Score = 34.7 bits (78), Expect = 0.16
Identities = 41/129 (31%), Positives = 55/129 (42%), Gaps = 20/129 (15%)
Query: 157 APARTPPDSVKDASAAEPAAAERVLGDVPGACTPVVPTRIPAIVSLSRGPVSPLVRFQLP 216
+P +P D + A+AA AAA +LG A P +PA +S +
Sbjct: 229 SPYASPADVLPAAAAASAAAASGLLGPAGLAGVGAFPAALPAFSGTDLLAISTAL----- 283
Query: 217 NVLFAYAH-TLALYHGGDDALLSDFCATLLGVSGALGAQQVFASAEEALQAAAHVLE--A 273
N L +Y + T +L G + A SG L A V A A A AAA++L A
Sbjct: 284 NTLASYGYNTNSLGLGLNSA----------AASGVLAA--VAAGANPAAAAAANLLASYA 331
Query: 274 GEHPPGPLG 282
GE GP G
Sbjct: 332 GEAGAGPAG 340
>gi|169164558 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 34.3 bits (77), Expect = 0.21
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 102 LAPGEKAA----FERLLSRGEAGRLL-PPWRPWWWNRGAGPQLLEELDNAPGSDAAELEL 156
++PG AA +LL RG +G PPW P R P L P + AA+
Sbjct: 1 MSPGGPAAQPGLILQLLPRGSSGGAASPPWSPAGTRRWPAPASSRPL--VPAARAAD--- 55
Query: 157 APARTPPDSVKDASAAEPAAAERVLGDVPGACTPVVPTRIP 197
+P+ S + +++EP+ A + L AC+ +++P
Sbjct: 56 SPSEACTVSAAEKASSEPSLARKPLPSSASACSASALSKLP 96
>gi|239748011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 34.3 bits (77), Expect = 0.21
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 102 LAPGEKAA----FERLLSRGEAGRLL-PPWRPWWWNRGAGPQLLEELDNAPGSDAAELEL 156
++PG AA +LL RG +G PPW P R P L P + AA+
Sbjct: 1 MSPGGPAAQPGLILQLLPRGSSGGAASPPWSPAGTRRWPAPASSRPL--VPAARAAD--- 55
Query: 157 APARTPPDSVKDASAAEPAAAERVLGDVPGACTPVVPTRIP 197
+P+ S + +++EP+ A + L AC+ +++P
Sbjct: 56 SPSEACTVSAAEKASSEPSLARKPLPSSASACSASALSKLP 96
>gi|169163356 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 34.3 bits (77), Expect = 0.21
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 102 LAPGEKAA----FERLLSRGEAGRLL-PPWRPWWWNRGAGPQLLEELDNAPGSDAAELEL 156
++PG AA +LL RG +G PPW P R P L P + AA+
Sbjct: 1 MSPGGPAAQPGLILQLLPRGSSGGAASPPWSPAGTRRWPAPASSRPL--VPAARAAD--- 55
Query: 157 APARTPPDSVKDASAAEPAAAERVLGDVPGACTPVVPTRIP 197
+P+ S + +++EP+ A + L AC+ +++P
Sbjct: 56 SPSEACTVSAAEKASSEPSLARKPLPSSASACSASALSKLP 96
>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
sapiens]
Length = 886
Score = 34.3 bits (77), Expect = 0.21
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 296 GEGPTNQKGYTLAALGDLAQTLGRARKQAVAREERDHLYRARKKCQFLLAWTNENEAA-- 353
G P G A L L Q L A + ++ + +A++ C AW E E A
Sbjct: 709 GTSPAFLSGPGAAELARLRQELDEAN--STIKQWEESWKQAKQACD---AWKKEAEEAGE 763
Query: 354 -LTPLALDCARAHQAHAVVAEEVAALTGELERLWGGPVPPA 393
+ +C A + + +V L ELERL GP P A
Sbjct: 764 RASAAGAECELAREQRDALEVQVKKLQEELERLHAGPEPQA 804
>gi|149944548 neurobeachin-like 2 [Homo sapiens]
Length = 2754
Score = 33.5 bits (75), Expect = 0.35
Identities = 44/161 (27%), Positives = 62/161 (38%), Gaps = 21/161 (13%)
Query: 150 DAAELELAPARTPPDSVKDASAAEPAAAERVLGDVPGACTPVVPTRI----PAIVSLSRG 205
D ++ AP R P S +S +A R G TP VP + PA+
Sbjct: 701 DGHLVKTAPLRCPSLSEPFSSCCIGSAGYRTTTTTTGLPTPPVPATLAYTHPALTRSQSV 760
Query: 206 PVSPLVRFQLPNVLFAYAHTLALYHGGDDALLSDFCATLLG----VSGALGAQQVFASAE 261
P S + + L G D+ L+ T G + G LGA +F
Sbjct: 761 PAS-------TGLGWGSGLVAPLQEGSIDSTLAGTQDTRWGSPTSLEGELGAVAIF---H 810
Query: 262 EALQAAA--HVLEAGEHPPGPLGTRGAMHEVA-RILLGEGP 299
EALQA A + G + P G +HE++ R+LL P
Sbjct: 811 EALQATALRTLCTLGPNETAPFKPEGELHELSTRLLLHYSP 851
>gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens]
Length = 356
Score = 33.5 bits (75), Expect = 0.35
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 3 PAGPCGFCPA-GEVQPARYTCPRCNAPYCSLRCYR 36
P+GP C G P RY C R CSL+CYR
Sbjct: 302 PSGPPPRCSVPGCPHPRRYACSRTGQALCSLQCYR 336
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 33.1 bits (74), Expect = 0.46
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 136 GPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEPAA 176
GPQL LD+ P A LAP R+PP S SA EPAA
Sbjct: 607 GPQLRRLLDSRPAGSGAP-ALAPPRSPPASA--GSAEEPAA 644
>gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens]
Length = 803
Score = 32.0 bits (71), Expect = 1.0
Identities = 48/159 (30%), Positives = 55/159 (34%), Gaps = 41/159 (25%)
Query: 74 QRETEDEPGEAGLSSGPAPGGLSGLWERL-----------APGEKAAF--------ERLL 114
+ E E+ PG G SG P G + L R APG AAF + LL
Sbjct: 118 REEAEEGPGLQGGESGANPAGPTALGPRCLSAVPTPAPISAPGPAAAFAGTVTIHNQDLL 177
Query: 115 SRGEAGRL---LPPWRPWWWNRGAGPQLLEELDNAPGS---------DAAELE-----LA 157
R E G L PP P W GA P AP + D EL
Sbjct: 178 LRFENGVLTLATPP--PHAWEPGAAPAQQPGCLIAPQAGFPHAAHPGDCPELPPDLLLAE 235
Query: 158 PARTPPDSVKDASAAEPAAA---ERVLGDVPGACTPVVP 193
PA P + A PAAA LG PG + P
Sbjct: 236 PAEPAPAPAPEEEAEGPAAALGPRGPLGSGPGVVLYLCP 274
>gi|56788364 tubulin, gamma complex associated protein 6 [Homo
sapiens]
Length = 1819
Score = 32.0 bits (71), Expect = 1.0
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 111 ERLLSRGEAGRLLPPWRPWWWNRGAGPQLLEELDNAPGSDAAELELAPARTPPDSVKDAS 170
E +S GE + P +PWW N G + EEL PG +L+P P +S +D +
Sbjct: 1338 EGSISVGENVSDVAPTQPWWPNT-PGDSVSEEL--GPGRSGDTEDLSP-NWPLNSQEDTA 1393
Query: 171 A---------AEPAAAERVLGD---VPGACTPVVPTRIP-AIVSLSRGPVSPLVRFQLPN 217
A AE +AAE G+ + G R P + S+S P++ L+R LP
Sbjct: 1394 AQSSPGRGEEAEASAAEAQGGEQAYLAGLAGQYHLERYPDSYESMSEPPIAHLLRPVLPR 1453
Query: 218 VLFAY 222
FA+
Sbjct: 1454 A-FAF 1457
>gi|20149643 zinc finger, HIT type 6 [Homo sapiens]
Length = 470
Score = 31.6 bits (70), Expect = 1.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 10 CPAGEVQPARYTCPRCNAPYCSLRCYRTH 38
C + A+Y CPRC CSL C + H
Sbjct: 220 CETCGTEEAKYRCPRCMRYSCSLPCVKKH 248
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 31.2 bits (69), Expect = 1.7
Identities = 47/182 (25%), Positives = 60/182 (32%), Gaps = 32/182 (17%)
Query: 55 RGCSAPPSRLASA----LRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLAPGEKAAF 110
RG PP A ++ R + GE G + P G +GL PGE A
Sbjct: 242 RGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGL-----PGENGAP 296
Query: 111 ERLLSRGEAGRLLPPWRPWW----WNRGA-------GPQLLEELDNAPGSDAAELELAPA 159
+ RG G P P N GA GP PGS A+ E+ PA
Sbjct: 297 GPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPA 356
Query: 160 RTPPDSVKDASAAEPAAAERV----------LGDVPGACTPVVPTRIPAIVSL--SRGPV 207
+P + EP + PG + P IP L +RGP
Sbjct: 357 GSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPP 416
Query: 208 SP 209
P
Sbjct: 417 GP 418
>gi|239754987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 412
Score = 31.2 bits (69), Expect = 1.7
Identities = 60/231 (25%), Positives = 75/231 (32%), Gaps = 48/231 (20%)
Query: 2 EPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGTCAENFYRDQVLGEL--RGCSA 59
EPA P AR T PR C C E R Q LG L RG
Sbjct: 93 EPARPAEGARPSPGTRARKTRPRARTASTRRPC----ALCPEPALRAQ-LGRLDRRG--- 144
Query: 60 PPSRLASALRRLR----------QQRETEDEPGEAGLSSGPAPGGLSGLWERLAPGEKAA 109
P R+ AL R +++ GEA GP G +G P K+
Sbjct: 145 PQHRVQRALALSAGLEDAHLPCLSPRPSQEMRGEATAREGPREGAPTG-----CPEGKSC 199
Query: 110 FERLLSRGEAGRLLP----PWRPWWW-------------NRGAGPQLLEELDNAPGSDAA 152
ER G L P PWRP+W R + + L+ + PG AA
Sbjct: 200 GERRPGPGTNQPLWPASLSPWRPYWEFPALVCFPIHEHPPRASWARHLDTVQTPPGVGAA 259
Query: 153 ELE------LAPARTPPDSVKDASAAEPAAAERVLGDVPGACTPVVPTRIP 197
E L R P + + A R L + P A + P P
Sbjct: 260 GAEILQLLALGEGRGPKQLLPSNFSEWQAHRSRGLQNSPHALSASCPPTSP 310
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 31.2 bits (69), Expect = 1.7
Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 14 EVQPARYTCPRCNAPYCSLRCYRTHGT--CAENF----YRDQVLGELRGCSAPPSRLASA 67
E P+R C CN + Y H CA R G +APP+ +A
Sbjct: 677 EDDPSRTLCEACNIRFSRHETYTVHKRYYCASRHDPPPRRPAAPPGPPGPAAPPAPSPAA 736
Query: 68 LRRLRQQRETED----------EPGEAGLSSGPAPGGLSGLWERLAP 104
R R++R+ + PG A P PG SG LAP
Sbjct: 737 PVRTRRRRKLYELHAAGAPPPPPPGHAPAPESPRPGSGSGSGPGLAP 783
>gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]
Length = 1035
Score = 31.2 bits (69), Expect = 1.7
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 73 QQRETEDEPGEAGLSSGPAPGGLSGLWERLAPGEKAAFERLLSRGEAGRLLPPWRPWWWN 132
Q E E+EP E GP GG L P E+ + + LP P W
Sbjct: 332 QGLEEEEEPSEGLEEEGPEAGGKE--LTPLPPQEE--------KSSSPSPLPTLGPLWGT 381
Query: 133 RGAGPQLLEELDNAPGSDAAELELAP----ARTPPDSVKD 168
G G + E+ A D ++L+P + PP ++D
Sbjct: 382 NGDGDETAEKEPPAAEDDIRGIQLSPGVGSSAGPPGDLED 421
>gi|222352143 TBC1 domain family, member 2 [Homo sapiens]
Length = 917
Score = 30.8 bits (68), Expect = 2.3
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 124 PPWRPWWWNRGAGPQLLEELDNAPGSDAAELE--LAPARTPPDSVKDASAAEPAAA 177
PP P G GP L EL G + AELE L P +TPP V A+A +P A
Sbjct: 151 PPATPDAALAGNGPVLHLEL----GQEEAELEEFLCPVKTPPGLVGVAAALQPFPA 202
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,991,068
Number of Sequences: 37866
Number of extensions: 976556
Number of successful extensions: 4185
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 4091
Number of HSP's gapped (non-prelim): 155
length of query: 403
length of database: 18,247,518
effective HSP length: 105
effective length of query: 298
effective length of database: 14,271,588
effective search space: 4252933224
effective search space used: 4252933224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.