Guide to the Human Genome
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Name: NGRN Sequence: fasta or formatted (291aa) NCBI GI: 75677385
Description:

neugrin

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         19           2
 C cysteine            0.7          2           1
 D aspartate           4.1         12           1
 E glutamate           9.3         27           2
 F phenylalanine       3.4         10           2
 G glycine             7.9         23           2
 H histidine           2.7          8           1
 I isoleucine          2.7          8           1
 K lysine              6.5         19           2
 L leucine            10.0         29           3
 M methionine          1.4          4           1
 N asparagine          2.4          7           1
 P proline             7.2         21           2
 Q glutamine           4.8         14           1
 R arginine            8.6         25           3
 S serine              9.3         27           2
 T threonine           4.8         14           1
 V valine              5.5         16           2
 W tryptophan          1.0          3           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neugrin 
LOC730129             0.587   PREDICTED: similar to Putative neugrin-like protein...
LOC730129             0.431   PREDICTED: similar to Putative neugrin-like protein...
LOC730129             0.431   PREDICTED: similar to Putative neugrin-like protein...
HDGF                  0.018   hepatoma-derived growth factor isoform c 
HDGF                  0.018   hepatoma-derived growth factor isoform b 
HDGF                  0.018   hepatoma-derived growth factor isoform a 
HECW1                 0.018   NEDD4-like ubiquitin-protein ligase 1 
RBM27                 0.016   RNA binding motif protein 27 
C19orf61              0.016   hypothetical protein LOC56006 
VPS13D                0.014   vacuolar protein sorting 13D isoform 2 
VPS13D                0.014   vacuolar protein sorting 13D isoform 1 
PCLO                  0.014   piccolo isoform 2 
PCLO                  0.014   piccolo isoform 1 
LOC100290946          0.014   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.014   PREDICTED: hypothetical protein XP_002344246 
PALM2-AKAP2           0.013   PALM2-AKAP2 protein isoform 2 
PALM2-AKAP2           0.013   PALM2-AKAP2 protein isoform 1 
AKAP2                 0.013   A kinase (PRKA) anchor protein 2 isoform 2 
AKAP2                 0.013   A kinase (PRKA) anchor protein 2 isoform 1 
RSL1D1                0.013   ribosomal L1 domain containing 1 
AMHR2                 0.013   anti-Mullerian hormone receptor, type II 
SMC4                  0.013   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.013   SMC4 structural maintenance of chromosomes 4-like 1 ...
AMFR                  0.013   autocrine motility factor receptor 
LOC645202             0.011   PREDICTED: hypothetical protein LOC645202 
LOC100288807          0.011   PREDICTED: hypothetical protein XP_002342780 
LOC100288807          0.011   PREDICTED: similar to Putative WBSCR19-like protein...
UNKL                  0.011   unkempt homolog (Drosophila)-like isoform 1 
LOC727832             0.011   golgi autoantigen, golgin subfamily a-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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