Guide to the Human Genome
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Name: LOC730129 Sequence: fasta or formatted (184aa) NCBI GI: 239748291
Description:

PREDICTED: similar to Putative neugrin-like protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {184aa} PREDICTED: similar to Putative neugrin-like protein
alt prot {258aa} PREDICTED: similar to Putative neugrin-like protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9          9           2
 C cysteine            1.1          2           1
 D aspartate           4.3          8           1
 E glutamate           6.5         12           2
 F phenylalanine       2.7          5           1
 G glycine             9.8         18           2
 H histidine           2.2          4           1
 I isoleucine          2.7          5           1
 K lysine              8.7         16           2
 L leucine            11.4         21           2
 M methionine          1.1          2           1
 N asparagine          3.8          7           1
 P proline             3.8          7           1
 Q glutamine           6.5         12           3
 R arginine            6.0         11           3
 S serine              9.8         18           2
 T threonine           5.4         10           2
 V valine              5.4         10           1
 W tryptophan          1.1          2           1
 Y tyrosine            2.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative neugrin-like protein... 
LOC730129             1.000   PREDICTED: similar to Putative neugrin-like protein...
LOC730129             0.971   PREDICTED: similar to Putative neugrin-like protein...
NGRN                  0.699   neugrin 
ZCCHC6                0.020   zinc finger, CCHC domain containing 6 
RAD51L3               0.009   RAD51-like 3 isoform 6 
AMFR                  0.009   autocrine motility factor receptor 
GOLGA3                0.006   Golgi autoantigen, golgin subfamily a, 3 
ACRV1                 0.006   acrosomal vesicle protein 1 isoform e precursor [Homo...
ACRV1                 0.006   acrosomal vesicle protein 1 isoform d precursor [Homo...
ACRV1                 0.006   acrosomal vesicle protein 1 isoform h precursor [Homo...
C21orf59              0.006   hypothetical protein LOC56683 
DNAJC3                0.006   DnaJ (Hsp40) homolog, subfamily C, member 3 
SV2A                  0.006   synaptic vesicle glycoprotein 2 
CLMN                  0.006   calmin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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