Guide to the Human Genome
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Name: TRPC1 Sequence: fasta or formatted (759aa) NCBI GI: 4507685
Description:

transient receptor potential cation channel, subfamily C, member 1

Referenced in:

Calcium and TRP Cation Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         41           2
 C cysteine            2.5         19           2
 D aspartate           4.9         37           2
 E glutamate           5.9         45           2
 F phenylalanine       5.9         45           2
 G glycine             3.8         29           1
 H histidine           2.0         15           1
 I isoleucine          5.5         42           2
 K lysine              6.9         52           2
 L leucine            13.3        101           4
 M methionine          3.4         26           2
 N asparagine          5.0         38           2
 P proline             3.2         24           3
 Q glutamine           3.8         29           2
 R arginine            4.7         36           2
 S serine              8.0         61           4
 T threonine           4.7         36           2
 V valine              5.5         42           4
 W tryptophan          1.4         11           1
 Y tyrosine            4.0         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transient receptor potential cation channel, subfamil... 
TRPC4                 0.407   transient receptor potential cation channel, subfam...
TRPC4                 0.407   transient receptor potential cation channel, subfamil...
TRPC4                 0.406   transient receptor potential cation channel, subfam...
TRPC5                 0.400   transient receptor potential cation channel, subfamil...
TRPC4                 0.392   transient receptor potential cation channel, subfam...
TRPC4                 0.337   transient receptor potential cation channel, subfam...
TRPC6                 0.272   transient receptor potential cation channel, subfamil...
TRPC3                 0.268   transient receptor potential cation channel, subfam...
TRPC3                 0.268   transient receptor potential cation channel, subfamil...
TRPC7                 0.259   transient receptor potential cation channel, subfamil...
TRPC4                 0.256   transient receptor potential cation channel, subfam...
LOC649660             0.087   PREDICTED: similar to transient receptor potential ...
TRPM2                 0.039   transient receptor potential cation channel, subfamil...
LOC100292661          0.026   PREDICTED: similar to transient receptor potential ...
LOC100288724          0.026   PREDICTED: similar to transient receptor potential ...
LOC100288724          0.026   PREDICTED: hypothetical protein XP_002342847, parti...
LOC100288724          0.026   PREDICTED: similar to transient receptor potential ...
TRPM8                 0.025   transient receptor potential cation channel, subfam...
TRPM1                 0.022   transient receptor potential cation channel, subfami...
TRPM3                 0.015   transient receptor potential cation channel, subfam...
TRPM3                 0.015   transient receptor potential cation channel, subfam...
TRPM3                 0.015   transient receptor potential cation channel, subfam...
TRPM3                 0.015   transient receptor potential cation channel, subfam...
TRPM3                 0.015   transient receptor potential cation channel, subfam...
TRPM3                 0.015   transient receptor potential cation channel, subfam...
TRPM3                 0.015   transient receptor potential cation channel, subfam...
TRPV1                 0.014   transient receptor potential cation channel, subfami...
TRPV1                 0.014   transient receptor potential cation channel, subfami...
TRPV1                 0.014   transient receptor potential cation channel, subfami...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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