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Search of human proteins with 74271828
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|74271828 transcription termination factor-like protein [Homo
sapiens]
(385 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|74271828 transcription termination factor-like protein [Homo ... 763 0.0
gi|21314736 transcription termination factor-like protein [Homo ... 763 0.0
gi|5902010 mitochondrial transcription termination factor precur... 152 5e-37
gi|38348729 hypothetical protein LOC203238 [Homo sapiens] 37 0.023
gi|34147676 MTERF domain containing 1 [Homo sapiens] 34 0.19
gi|52317243 olfactory receptor, family 4, subfamily D, member 2 ... 34 0.25
gi|148747862 Rap guanine nucleotide exchange factor 3 isoform b ... 33 0.43
gi|20070215 Rap guanine nucleotide exchange factor 3 isoform b [... 33 0.43
gi|148747859 Rap guanine nucleotide exchange factor 3 isoform a ... 33 0.43
gi|50811873 suppressor of hairy wing homolog 4 isoform 2 [Homo s... 32 0.96
gi|50811871 suppressor of hairy wing homolog 4 isoform 1 [Homo s... 32 0.96
gi|55770834 centromere protein F [Homo sapiens] 31 1.6
gi|40807445 protein regulator of cytokinesis 1 isoform 3 [Homo s... 31 1.6
gi|40807443 protein regulator of cytokinesis 1 isoform 2 [Homo s... 31 1.6
gi|4506039 protein regulator of cytokinesis 1 isoform 1 [Homo sa... 31 1.6
gi|38176300 nestin [Homo sapiens] 31 2.1
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 30 2.8
gi|110349721 titin isoform novex-3 [Homo sapiens] 30 3.7
gi|88758615 integrin alpha 2b preproprotein [Homo sapiens] 30 3.7
gi|109134347 NY-REN-58 antigen [Homo sapiens] 30 4.8
gi|109134355 NY-REN-58 antigen [Homo sapiens] 30 4.8
gi|122937243 dual specificity phosphatase 27 [Homo sapiens] 29 6.3
gi|20357504 dystonin isoform 1eB precursor [Homo sapiens] 29 6.3
gi|168823435 hypothetical protein LOC79747 [Homo sapiens] 29 8.2
>gi|74271828 transcription termination factor-like protein [Homo
sapiens]
Length = 385
Score = 763 bits (1971), Expect = 0.0
Identities = 385/385 (100%), Positives = 385/385 (100%)
Query: 1 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR 60
MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
Sbjct: 1 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR 60
Query: 61 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ 120
KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
Sbjct: 61 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ 120
Query: 121 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP 180
LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
Sbjct: 121 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP 180
Query: 181 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT 240
VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
Sbjct: 181 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT 240
Query: 241 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE 300
SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
Sbjct: 241 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE 300
Query: 301 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE 360
ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
Sbjct: 301 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE 360
Query: 361 ANFGKIQAKKVRPLFNPVAPLNVEE 385
ANFGKIQAKKVRPLFNPVAPLNVEE
Sbjct: 361 ANFGKIQAKKVRPLFNPVAPLNVEE 385
>gi|21314736 transcription termination factor-like protein [Homo
sapiens]
Length = 385
Score = 763 bits (1971), Expect = 0.0
Identities = 385/385 (100%), Positives = 385/385 (100%)
Query: 1 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR 60
MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR
Sbjct: 1 MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIR 60
Query: 61 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ 120
KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ
Sbjct: 61 KIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQ 120
Query: 121 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP 180
LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP
Sbjct: 121 LVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNP 180
Query: 181 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT 240
VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT
Sbjct: 181 VEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFT 240
Query: 241 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE 300
SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE
Sbjct: 241 SFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLE 300
Query: 301 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE 360
ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE
Sbjct: 301 ERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFE 360
Query: 361 ANFGKIQAKKVRPLFNPVAPLNVEE 385
ANFGKIQAKKVRPLFNPVAPLNVEE
Sbjct: 361 ANFGKIQAKKVRPLFNPVAPLNVEE 385
>gi|5902010 mitochondrial transcription termination factor precursor
[Homo sapiens]
Length = 399
Score = 152 bits (384), Expect = 5e-37
Identities = 98/336 (29%), Positives = 178/336 (52%), Gaps = 7/336 (2%)
Query: 35 YTTDKQSSKENTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGADETAV 94
+ TD + K N ++ L VDI R+ + V T +++ L GA + +
Sbjct: 63 HNTDSEPLK-NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVI 121
Query: 95 ASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQ 154
ASI+ R P AI +P ++ + LW+ + ++ E++ ++E+ PESFF + N + N++
Sbjct: 122 ASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIK 181
Query: 155 FFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLLKLLS 214
F +GL + RLLT AP F N ++ NKQMV LQ + L +G ++ ++ K++
Sbjct: 182 FLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDP--ADFVRKIIF 239
Query: 215 QNPFILLNSPTAIKETLEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSKN- 272
+NPFIL+ S +K +EFL+ S E+L L+ + L + S + K
Sbjct: 240 KNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEK 299
Query: 273 --AFKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIV 330
+ CT+ ++++ VL P +++ + +++ L+ E ISI+QI E P VL+ + +
Sbjct: 300 LFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTL 359
Query: 331 QYRIRKLNSSGYRIKDGHLANLNGSKKEFEANFGKI 366
+ RI++L ++G + ++ L+ SKK +EA K+
Sbjct: 360 KSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKL 395
>gi|38348729 hypothetical protein LOC203238 [Homo sapiens]
Length = 1326
Score = 37.4 bits (85), Expect = 0.023
Identities = 63/303 (20%), Positives = 117/303 (38%), Gaps = 43/303 (14%)
Query: 94 VASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFT-----IKDQEN 148
+ ++L+ +A++ N + + + +CKN+ + ++ ++Q E FT IK QE+
Sbjct: 599 LCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTMRELQQTQEDTFTKVAEQIKAQES 658
Query: 149 ----QKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEAN 204
QK +EL L+ + + F EKN + + +++S+ + ++
Sbjct: 659 CWHRQK------KELELQYSELFLEVQKRAQKFQEIAEKNMEKLNHIEKSHEQLVLENSH 712
Query: 205 MKVWLLKLLSQNP-----------------FILLNSPTAIKETLEFLQEQGFTSFEILQL 247
K KLLSQ + L + A+ +FLQEQ +FE+ +L
Sbjct: 713 FK----KLLSQTQREQMSLLAACALMAGALYPLYSRSCALSTQRDFLQEQ-VNTFELFKL 767
Query: 248 LSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPA-----LLYYSVPVLEER 302
+ Q K FK ++ V+ A +L S L
Sbjct: 768 EIRTLAQALSTVEEKKQEEAKMKKKTFKGLIRIFRKGVIAVLAANRLKILGQSCASLFTW 827
Query: 303 MQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFEAN 362
M+ +EGI + P P+ + ++R L + + LA + S E +
Sbjct: 828 MES-FKEGIGMLVCTGEPQDKHKFPKHQKEQLRCLQALSWLTSSDLLAAIISSMAELQDV 886
Query: 363 FGK 365
GK
Sbjct: 887 IGK 889
>gi|34147676 MTERF domain containing 1 [Homo sapiens]
Length = 417
Score = 34.3 bits (77), Expect = 0.19
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 216 NPFILLNSPTAIKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRSIQNSISF--SKNA 273
N + L+ IK+ L FL++ G ++ L+K +F +++ +++ SKN
Sbjct: 177 NLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHA-IFSEDLENLKTRVAYLHSKNF 235
Query: 274 FKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIVQYR 333
K D+ Q+V K P LL +SV L+ R+ G ++ + ++ + +V+ L P+++
Sbjct: 236 SKA---DVAQMVRKAPFLLNFSVERLDNRL-GFFQKELELSVKKTRDLVVRL-PRLLTGS 290
Query: 334 IR--KLNSSGYRIKDGHLAN 351
+ K N YR++ G N
Sbjct: 291 LEPVKENMKVYRLELGFKHN 310
>gi|52317243 olfactory receptor, family 4, subfamily D, member 2
[Homo sapiens]
Length = 307
Score = 33.9 bits (76), Expect = 0.25
Identities = 26/107 (24%), Positives = 45/107 (42%)
Query: 231 LEFLQEQGFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPA 290
LEFL+ +++ L +LF L + K A CT H + ++ P+
Sbjct: 195 LEFLKISNSGLLDVVWFFLLLMSYLFILVMLRSHPGEARRKAASTCTTHIIVVSMIFVPS 254
Query: 291 LLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKL 337
+ Y+ P M L+ G ++ PM+ L Q +Q +R+L
Sbjct: 255 IYLYARPFTPFPMDKLVSIGHTVMTPMLNPMIYTLRNQDMQAAVRRL 301
>gi|148747862 Rap guanine nucleotide exchange factor 3 isoform b
[Homo sapiens]
Length = 881
Score = 33.1 bits (74), Expect = 0.43
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 131 KLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRI 190
+L+ +F + +K+Q+N LN F GL N ISRL + H + + R+
Sbjct: 691 QLLRKFIKLAAHLKEQKN--LNSFFAVMFGLSNSAISRLAHTWERLPHKVRKLYSALERL 748
Query: 191 LQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFTSFEILQLLSK 250
L S+ N +V+ L L +P ++ P +K+ + F+ E T E L K
Sbjct: 749 LDPSW--------NHRVYRLALAKLSPPVIPFMPLLLKD-MTFIHEGNHTLVENLINFEK 799
Query: 251 LK 252
++
Sbjct: 800 MR 801
>gi|20070215 Rap guanine nucleotide exchange factor 3 isoform b
[Homo sapiens]
Length = 881
Score = 33.1 bits (74), Expect = 0.43
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 131 KLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRI 190
+L+ +F + +K+Q+N LN F GL N ISRL + H + + R+
Sbjct: 691 QLLRKFIKLAAHLKEQKN--LNSFFAVMFGLSNSAISRLAHTWERLPHKVRKLYSALERL 748
Query: 191 LQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFTSFEILQLLSK 250
L S+ N +V+ L L +P ++ P +K+ + F+ E T E L K
Sbjct: 749 LDPSW--------NHRVYRLALAKLSPPVIPFMPLLLKD-MTFIHEGNHTLVENLINFEK 799
Query: 251 LK 252
++
Sbjct: 800 MR 801
>gi|148747859 Rap guanine nucleotide exchange factor 3 isoform a
[Homo sapiens]
Length = 923
Score = 33.1 bits (74), Expect = 0.43
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 131 KLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRI 190
+L+ +F + +K+Q+N LN F GL N ISRL + H + + R+
Sbjct: 733 QLLRKFIKLAAHLKEQKN--LNSFFAVMFGLSNSAISRLAHTWERLPHKVRKLYSALERL 790
Query: 191 LQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFTSFEILQLLSK 250
L S+ N +V+ L L +P ++ P +K+ + F+ E T E L K
Sbjct: 791 LDPSW--------NHRVYRLALAKLSPPVIPFMPLLLKD-MTFIHEGNHTLVENLINFEK 841
Query: 251 LK 252
++
Sbjct: 842 MR 843
>gi|50811873 suppressor of hairy wing homolog 4 isoform 2 [Homo
sapiens]
Length = 966
Score = 32.0 bits (71), Expect = 0.96
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 138 ESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLD 197
E T+ D+EN+ QE G KN+V + N+ + VEK KQ+ + QE L
Sbjct: 787 EESITVSDKENETCLAD--QETGSKNIV-----SCDSNIGADKVEKKKQIQHVCQEMELK 839
Query: 198 VGGSEANM 205
+ S N+
Sbjct: 840 MCQSSENI 847
>gi|50811871 suppressor of hairy wing homolog 4 isoform 1 [Homo
sapiens]
Length = 979
Score = 32.0 bits (71), Expect = 0.96
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 138 ESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLD 197
E T+ D+EN+ QE G KN+V + N+ + VEK KQ+ + QE L
Sbjct: 800 EESITVSDKENETCLAD--QETGSKNIV-----SCDSNIGADKVEKKKQIQHVCQEMELK 852
Query: 198 VGGSEANM 205
+ S N+
Sbjct: 853 MCQSSENI 860
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 31.2 bits (69), Expect = 1.6
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 38 DKQSSKENTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGADETAVASI 97
+K + +EN+ T+EKL D+ K R +L + E ++E++ + L + + A+ S
Sbjct: 542 EKINQQENSLTLEKLKLAVADLEKQRDCSQDLLKKREHHIEQLNDKLSKTEKESKALLSA 601
Query: 98 LE 99
LE
Sbjct: 602 LE 603
>gi|40807445 protein regulator of cytokinesis 1 isoform 3 [Homo
sapiens]
Length = 566
Score = 31.2 bits (69), Expect = 1.6
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 19/144 (13%)
Query: 103 EAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLK 162
E+IVC A+N R++W+L+ E++ ++ E +K + L++ +E LK
Sbjct: 10 ESIVCLQKALNHLREIWELIGIPEDQRLQRTE-------VVKKHIKELLDMMIAEEESLK 62
Query: 163 NVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLL-KLLSQNPFILL 221
+I + K++ + E +++ E + L K L ++
Sbjct: 63 ERLIKSISVC-----------QKELNTLCSELHVEPFQEEGETTILQLEKDLRTQVELMR 111
Query: 222 NSPTAIKETLEFLQEQGFTSFEIL 245
K+ L+ LQEQ EIL
Sbjct: 112 KQKKERKQELKLLQEQDQELCEIL 135
>gi|40807443 protein regulator of cytokinesis 1 isoform 2 [Homo
sapiens]
Length = 606
Score = 31.2 bits (69), Expect = 1.6
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 19/144 (13%)
Query: 103 EAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLK 162
E+IVC A+N R++W+L+ E++ ++ E +K + L++ +E LK
Sbjct: 10 ESIVCLQKALNHLREIWELIGIPEDQRLQRTE-------VVKKHIKELLDMMIAEEESLK 62
Query: 163 NVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLL-KLLSQNPFILL 221
+I + K++ + E +++ E + L K L ++
Sbjct: 63 ERLIKSISVC-----------QKELNTLCSELHVEPFQEEGETTILQLEKDLRTQVELMR 111
Query: 222 NSPTAIKETLEFLQEQGFTSFEIL 245
K+ L+ LQEQ EIL
Sbjct: 112 KQKKERKQELKLLQEQDQELCEIL 135
>gi|4506039 protein regulator of cytokinesis 1 isoform 1 [Homo
sapiens]
Length = 620
Score = 31.2 bits (69), Expect = 1.6
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 19/144 (13%)
Query: 103 EAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLK 162
E+IVC A+N R++W+L+ E++ ++ E +K + L++ +E LK
Sbjct: 10 ESIVCLQKALNHLREIWELIGIPEDQRLQRTE-------VVKKHIKELLDMMIAEEESLK 62
Query: 163 NVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLL-KLLSQNPFILL 221
+I + K++ + E +++ E + L K L ++
Sbjct: 63 ERLIKSISVC-----------QKELNTLCSELHVEPFQEEGETTILQLEKDLRTQVELMR 111
Query: 222 NSPTAIKETLEFLQEQGFTSFEIL 245
K+ L+ LQEQ EIL
Sbjct: 112 KQKKERKQELKLLQEQDQELCEIL 135
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 30.8 bits (68), Expect = 2.1
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 39 KQSSKENTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGADETAVASIL 98
K + KE+T+T++ L K + ++ K L T +E+ + LQE TA L
Sbjct: 615 KPTGKEDTQTLQSLQKENQELMKSLEGNLETFLFPGTENQELVSSLQENLESLTA----L 670
Query: 99 ERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQK 150
E+ + + SP V + L L +N+E L L ++ E+F ++ ++ENQ+
Sbjct: 671 EKENQEPLRSP-EVGDEEALRPLTKENQEPLRSLEDENKEAFRSL-EKENQE 720
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 30.4 bits (67), Expect = 2.8
Identities = 55/256 (21%), Positives = 103/256 (40%), Gaps = 35/256 (13%)
Query: 25 KYRPFLACFTYTTDK-------QSSKENTRTVEKLYKCSVDIRKIRRLKGW---VLLEDE 74
++ P L+C TY DK Q K+ +R L + ++ LK + VL+ DE
Sbjct: 116 RFAPGLSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEICLKDASFLKSFPWSVLVVDE 175
Query: 75 TY-VEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLI 133
+ ++ +++L + ++ + V S+L + N+ ++L+ L+ E +L
Sbjct: 176 AHRLKNQSSLLHKTLSEFSVVFSLL-------LTGTPIQNSLQELYSLLSFVEPDLFSKE 228
Query: 134 E--QFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPN-----VFHNPVEKNKQ 186
E F + + I+ + + + L V + + T P ++H K+
Sbjct: 229 EVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKK 288
Query: 187 MVRILQESYLDVGGSEANMKVWLLKLLSQ------NPFILLNSPTAIKETLEFLQEQGFT 240
+ + LD +E KV L +LSQ +P++ E + L E
Sbjct: 289 YYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASGK 348
Query: 241 SFEILQLLSKLKGFLF 256
L LL KL FL+
Sbjct: 349 ----LHLLDKLLAFLY 360
>gi|110349721 titin isoform novex-3 [Homo sapiens]
Length = 5604
Score = 30.0 bits (66), Expect = 3.7
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 126 EEELIKLIEQFPESFFTIKDQENQKLNVQ----FFQELGLKNVVISRLLTAAPNVFHNPV 181
E++ I E+ P D N +VQ QE+ + +R + ++ N +
Sbjct: 4639 EQQEIHYKEKIPSPETLQPDTHNISKSVQNNVFASQEISSSQELSNRTMVEKSSIDENSI 4698
Query: 182 EKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKET 230
K+ VR +QE LD+ ++ ++K + ++ S++ +L S I+ET
Sbjct: 4699 SLEKE-VRHVQEQNLDILKTDLSLKSFSEEIYSESCALLPTSSADIEET 4746
>gi|88758615 integrin alpha 2b preproprotein [Homo sapiens]
Length = 1039
Score = 30.0 bits (66), Expect = 3.7
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 20/175 (11%)
Query: 69 VLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKL-WQLVCKNEE 127
V+L +T+V+E I+ + G D+ V + + ++ SP V L Q+ NE
Sbjct: 615 VVLHGDTHVQEQTRIVLDCGEDDVCVPQL--QLTASVTGSPLLVGADNVLELQMDAANEG 672
Query: 128 E---LIKLIEQFPESFFTIKDQENQKLNVQFFQEL--GLKNVVISRLLTAAPNVFHNPVE 182
E +L P+ ++ NV+ F+ L K +R++ NP++
Sbjct: 673 EGAYEAELAVHLPQGAHYMRALS----NVEGFERLICNQKKENETRVVLCE---LGNPMK 725
Query: 183 KNKQ--MVRILQESYLDVGGSEANMKVWLLKLLSQNP---FILLNSPTAIKETLE 232
KN Q + ++ L+ G + ++ + SQNP +LL+ P + +E
Sbjct: 726 KNAQIGIAMLVSVGNLEEAGESVSFQLQIRSKNSQNPNSKIVLLDVPVRAEAQVE 780
>gi|109134347 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 29.6 bits (65), Expect = 4.8
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 39 KQSSKENTRTVEKLYKCSVDIR----KIRRLKGWVLLEDETYVEEIANILQELGADETAV 94
+ SS++NT + KL+K +I K++ LK LE E A EL + +
Sbjct: 285 QSSSEQNTFLINKLHKAEREINTLSSKVKELKHSNKLEITDIKLETARAKSELERERNKI 344
Query: 95 ASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQ 154
S L+ AV + L+ + + ELI+ ++ K++ QKL V
Sbjct: 345 QSELDGLQSDNEILKAAVEHHK---VLLVEKDRELIRKVQ-------AAKEEGYQKLVVL 394
Query: 155 FFQELGLKN 163
++L L+N
Sbjct: 395 QDEKLELEN 403
>gi|109134355 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 29.6 bits (65), Expect = 4.8
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 39 KQSSKENTRTVEKLYKCSVDIR----KIRRLKGWVLLEDETYVEEIANILQELGADETAV 94
+ SS++NT + KL+K +I K++ LK LE E A EL + +
Sbjct: 285 QSSSEQNTFLINKLHKAEREINTLSSKVKELKHSNKLEITDIKLETARAKSELERERNKI 344
Query: 95 ASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQ 154
S L+ AV + L+ + + ELI+ ++ K++ QKL V
Sbjct: 345 QSELDGLQSDNEILKAAVEHHK---VLLVEKDRELIRKVQ-------AAKEEGYQKLVVL 394
Query: 155 FFQELGLKN 163
++L L+N
Sbjct: 395 QDEKLELEN 403
>gi|122937243 dual specificity phosphatase 27 [Homo sapiens]
Length = 1158
Score = 29.3 bits (64), Expect = 6.3
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 287 KCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKD 346
+CP +L + +L E + +RE + + TP VL+L +VQ R + + D
Sbjct: 80 ECPGMLESAEQLLVEDLYNRVREKMDDTSLYNTPCVLDLQRALVQDR----QEAPWNEVD 135
Query: 347 GHLANLNGSKKEFEANFGKIQAKKVRPLFN 376
N+ ++K N G+++ + + N
Sbjct: 136 EVWPNVFIAEKSVAVNKGRLKRLGITHILN 165
>gi|20357504 dystonin isoform 1eB precursor [Homo sapiens]
Length = 3062
Score = 29.3 bits (64), Expect = 6.3
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 19/94 (20%)
Query: 58 DIRKIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRK 117
D+ K R K +L+EDET ++++ LG E V ++E R
Sbjct: 2494 DLIKGRDGKSDILIEDETSIQKM-----YLGEGEVLVEGLVE-------------EENRH 2535
Query: 118 LWQLVCKNEEELIKLI-EQFPESFFTIKDQENQK 150
L L KN + KLI QFP T ++ NQK
Sbjct: 2536 LKLLPGKNTRDSFKLINSQFPFPQITNNEELNQK 2569
>gi|168823435 hypothetical protein LOC79747 [Homo sapiens]
Length = 1667
Score = 28.9 bits (63), Expect = 8.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 295 SVPVLEERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGY 342
S P EER Q +E I +P +LE +P++++ + ++ S Y
Sbjct: 1496 SSPGKEEREQSTRKENIQTGPRTRSPTILETSPRLIRKALEFMDLSQY 1543
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,946,881
Number of Sequences: 37866
Number of extensions: 575685
Number of successful extensions: 1561
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1541
Number of HSP's gapped (non-prelim): 29
length of query: 385
length of database: 18,247,518
effective HSP length: 104
effective length of query: 281
effective length of database: 14,309,454
effective search space: 4020956574
effective search space used: 4020956574
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.