Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MTERFD3 Sequence: fasta or formatted (385aa) NCBI GI: 74271828
Description:

transcription termination factor-like protein

Referenced in:

Mitochondria

Other entries for this name:
alt mRNA [385aa] transcription termination factor-like protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         18           2
 C cysteine            2.6         10           1
 D aspartate           2.3          9           1
 E glutamate           8.6         33           3
 F phenylalanine       5.2         20           2
 G glycine             3.4         13           2
 H histidine           0.8          3           1
 I isoleucine          6.0         23           1
 K lysine              8.6         33           2
 L leucine            13.8         53           3
 M methionine          1.6          6           1
 N asparagine          5.5         21           1
 P proline             4.7         18           2
 Q glutamine           6.2         24           1
 R arginine            5.5         21           2
 S serine              6.8         26           2
 T threonine           4.4         17           2
 V valine              6.2         24           2
 W tryptophan          1.0          4           1
 Y tyrosine            2.3          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription termination factor-like protein 
MTERFD3               1.000   transcription termination factor-like protein 
MTERF                 0.172   mitochondrial transcription termination factor precur...
C9orf93               0.016   hypothetical protein LOC203238 
MTERFD1               0.012   MTERF domain containing 1 
OR4D2                 0.012   olfactory receptor, family 4, subfamily D, member 2 ...
RAPGEF3               0.011   Rap guanine nucleotide exchange factor 3 isoform b ...
RAPGEF3               0.011   Rap guanine nucleotide exchange factor 3 isoform b [...
RAPGEF3               0.011   Rap guanine nucleotide exchange factor 3 isoform a ...
ZNF280D               0.009   suppressor of hairy wing homolog 4 isoform 2 
ZNF280D               0.009   suppressor of hairy wing homolog 4 isoform 1 
CENPF                 0.008   centromere protein F 
PRC1                  0.008   protein regulator of cytokinesis 1 isoform 3 
PRC1                  0.008   protein regulator of cytokinesis 1 isoform 2 
PRC1                  0.008   protein regulator of cytokinesis 1 isoform 1 
NES                   0.008   nestin 
CHD1L                 0.007   chromodomain helicase DNA binding protein 1-like [H...
TTN                   0.007   titin isoform novex-3 
ITGA2B                0.007   integrin alpha 2b preproprotein 
CCDC41                0.007   NY-REN-58 antigen 
CCDC41                0.007   NY-REN-58 antigen 
DUSP27                0.005   dual specificity phosphatase 27 
DST                   0.005   dystonin isoform 1eB precursor 
C6orf103              0.005   hypothetical protein LOC79747 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press