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Search of human proteins with 73747844
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|73747844 ligase III, DNA, ATP-dependent isoform beta
precursor [Homo sapiens]
(949 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|73747844 ligase III, DNA, ATP-dependent isoform beta precurso... 1919 0.0
gi|73747829 ligase III, DNA, ATP-dependent isoform alpha precurs... 1885 0.0
gi|4557719 DNA ligase I [Homo sapiens] 175 2e-43
gi|46255052 DNA ligase IV [Homo sapiens] 152 1e-36
gi|23199993 DNA ligase IV [Homo sapiens] 152 1e-36
gi|148539894 DNA ligase IV [Homo sapiens] 152 1e-36
gi|156523968 poly (ADP-ribose) polymerase family, member 1 [Homo... 54 7e-07
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 38 0.039
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 37 0.067
gi|93102361 palladin [Homo sapiens] 37 0.11
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 37 0.11
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 37 0.11
gi|4885375 histone cluster 1, H1c [Homo sapiens] 35 0.43
gi|34452681 ring finger protein 10 [Homo sapiens] 34 0.74
gi|48255933 high-mobility group nucleosome binding domain 1 [Hom... 34 0.74
gi|55749459 transcription elongation factor A (SII)-like 4 [Homo... 34 0.74
gi|55749442 transcription elongation factor A (SII)-like 4 [Homo... 34 0.74
gi|65505873 transcription elongation factor A (SII)-like 4 [Homo... 34 0.74
gi|55749451 transcription elongation factor A (SII)-like 4 [Homo... 34 0.74
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 33 0.97
gi|239757062 PREDICTED: similar to hCG1979072 [Homo sapiens] 33 0.97
gi|239751572 PREDICTED: similar to hCG1979072 [Homo sapiens] 33 0.97
gi|239746084 PREDICTED: similar to hCG1979072 [Homo sapiens] 33 0.97
gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F... 33 0.97
gi|4885373 histone cluster 1, H1a [Homo sapiens] 33 0.97
gi|11761629 fibrinogen, alpha polypeptide isoform alpha prepropr... 33 1.3
gi|4503689 fibrinogen, alpha polypeptide isoform alpha-E preprop... 33 1.3
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 33 1.3
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 33 1.3
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 33 1.3
>gi|73747844 ligase III, DNA, ATP-dependent isoform beta precursor
[Homo sapiens]
Length = 949
Score = 1919 bits (4970), Expect = 0.0
Identities = 949/949 (100%), Positives = 949/949 (100%)
Query: 1 MSLAFKIFFPQTLRALSRKELCLFRKHHWRDVRQFSQWSETDLLHGHPLFLRRKPVLSFQ 60
MSLAFKIFFPQTLRALSRKELCLFRKHHWRDVRQFSQWSETDLLHGHPLFLRRKPVLSFQ
Sbjct: 1 MSLAFKIFFPQTLRALSRKELCLFRKHHWRDVRQFSQWSETDLLHGHPLFLRRKPVLSFQ 60
Query: 61 GSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG 120
GSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG
Sbjct: 61 GSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG 120
Query: 121 KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH 180
KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH
Sbjct: 121 KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH 180
Query: 181 IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAKPNNSGEAP 240
IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAKPNNSGEAP
Sbjct: 181 IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAKPNNSGEAP 240
Query: 241 SSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH 300
SSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH
Sbjct: 241 SSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH 300
Query: 301 GDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ 360
GDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ
Sbjct: 301 GDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ 360
Query: 361 SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL 420
SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL
Sbjct: 361 SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL 420
Query: 421 KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTP 480
KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTP
Sbjct: 421 KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTP 480
Query: 481 VQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH 540
VQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH
Sbjct: 481 VQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH 540
Query: 541 FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF 600
FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF
Sbjct: 541 FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF 600
Query: 601 NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLK 660
NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLK
Sbjct: 601 NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLK 660
Query: 661 DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS 720
DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS
Sbjct: 661 DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS 720
Query: 721 QKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA 780
QKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA
Sbjct: 721 QKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA 780
Query: 781 VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV 840
VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV
Sbjct: 781 VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV 840
Query: 841 VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPS 900
VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPS
Sbjct: 841 VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPS 900
Query: 901 AMKVGEKLATKSSPVKVGEKRKAADETLCQTKRRPASEQRGRTVPAGRR 949
AMKVGEKLATKSSPVKVGEKRKAADETLCQTKRRPASEQRGRTVPAGRR
Sbjct: 901 AMKVGEKLATKSSPVKVGEKRKAADETLCQTKRRPASEQRGRTVPAGRR 949
>gi|73747829 ligase III, DNA, ATP-dependent isoform alpha precursor
[Homo sapiens]
Length = 1009
Score = 1885 bits (4883), Expect = 0.0
Identities = 932/932 (100%), Positives = 932/932 (100%)
Query: 1 MSLAFKIFFPQTLRALSRKELCLFRKHHWRDVRQFSQWSETDLLHGHPLFLRRKPVLSFQ 60
MSLAFKIFFPQTLRALSRKELCLFRKHHWRDVRQFSQWSETDLLHGHPLFLRRKPVLSFQ
Sbjct: 1 MSLAFKIFFPQTLRALSRKELCLFRKHHWRDVRQFSQWSETDLLHGHPLFLRRKPVLSFQ 60
Query: 61 GSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG 120
GSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG
Sbjct: 61 GSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG 120
Query: 121 KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH 180
KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH
Sbjct: 121 KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH 180
Query: 181 IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAKPNNSGEAP 240
IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAKPNNSGEAP
Sbjct: 181 IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAKPNNSGEAP 240
Query: 241 SSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH 300
SSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH
Sbjct: 241 SSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH 300
Query: 301 GDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ 360
GDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ
Sbjct: 301 GDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ 360
Query: 361 SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL 420
SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL
Sbjct: 361 SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL 420
Query: 421 KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTP 480
KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTP
Sbjct: 421 KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTP 480
Query: 481 VQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH 540
VQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH
Sbjct: 481 VQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH 540
Query: 541 FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF 600
FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF
Sbjct: 541 FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF 600
Query: 601 NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLK 660
NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLK
Sbjct: 601 NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLK 660
Query: 661 DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS 720
DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS
Sbjct: 661 DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS 720
Query: 721 QKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA 780
QKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA
Sbjct: 721 QKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA 780
Query: 781 VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV 840
VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV
Sbjct: 781 VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV 840
Query: 841 VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPS 900
VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPS
Sbjct: 841 VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPS 900
Query: 901 AMKVGEKLATKSSPVKVGEKRKAADETLCQTK 932
AMKVGEKLATKSSPVKVGEKRKAADETLCQTK
Sbjct: 901 AMKVGEKLATKSSPVKVGEKRKAADETLCQTK 932
>gi|4557719 DNA ligase I [Homo sapiens]
Length = 919
Score = 175 bits (443), Expect = 2e-43
Identities = 124/373 (33%), Positives = 188/373 (50%), Gaps = 35/373 (9%)
Query: 480 PVQPMLAEACKSVEYAMKKCPNGMFS-EIKYDGERVQVHK-NGDHFSYFSRSLKPVLPHK 537
P++PMLA + + +K+ F+ E KYDG+R Q+H G FSR+ +
Sbjct: 539 PLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQED----N 594
Query: 538 VAHFKDYIPQA----FPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKK----AAFQDAN 589
+ D I + P S ILD+E + D + + PF L K+ A+
Sbjct: 595 TGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQ 654
Query: 590 VCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRV 649
VCL+ FD IY N SL+ PL RR+ L +N VE +F+ +A+ + +
Sbjct: 655 VCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQS 714
Query: 650 IQEGLEGLVLK--DVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKG 705
+++ EGL++K DV TYE KR +WLK+KKDYL+ + DT DLVV+GA+ G+G +
Sbjct: 715 VKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLD--GVGDTLDLVVIGAYLGRGKRA 772
Query: 706 GMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNK 765
G FL+ YD S++ + K G D L L + + PS P +++++
Sbjct: 773 GRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVL---PSPRP-YVRIDG 828
Query: 766 IYYPDFIVPDPKKAAVWEITGAEFSKSEAHTA--------DGISIRFPRCTRIRDDKDWK 817
PD + DP +AVWE+ A+ S S + A GIS+RFPR R+R+DK +
Sbjct: 829 AVIPDHWL-DP--SAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPE 885
Query: 818 SATNLPQLKELYQ 830
AT Q+ LY+
Sbjct: 886 QATTSAQVACLYR 898
>gi|46255052 DNA ligase IV [Homo sapiens]
Length = 911
Score = 152 bits (385), Expect = 1e-36
Identities = 149/569 (26%), Positives = 260/569 (45%), Gaps = 63/569 (11%)
Query: 300 HGDV----YLTVKLLLPGVIKT--VYNLNDKQIVKLFSRIFNCNPD--DMARDLE----- 346
H DV Y ++L+LP + + Y + + + KL+ + N D D + L
Sbjct: 57 HKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPT 116
Query: 347 --QGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSK---LTKEDEQQQALQDIA 401
GD + + + K K LTIQ+V++ L ++ ++D +++L +
Sbjct: 117 GTHGDAGDFAMIAYFVLKP-RCLQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLI 175
Query: 402 SRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEV 461
++ +A + K +IR+I DLK+ + + +A E + +L+ V R LH+
Sbjct: 176 TQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVC-RQLHDPSVG 234
Query: 462 EKEPGQRRALSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFS-EIKYDGERVQVHKNG 520
+ + +L + +PMLA A +E+ K + F E K DGER+Q+HK+G
Sbjct: 235 LSD--------ISITLFSAFKPMLA-AIADIEHIEKDMKHQSFYIETKLDGERMQMHKDG 285
Query: 521 DHFSYFSRSLKPVLPHKVAH-----FKDYIPQAFPGGHSM-ILDSEVLLIDNKTGKPLPF 574
D + YFSR+ A +I AF + ILD E++ + T +
Sbjct: 286 DVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQK 345
Query: 575 GT-LGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEM 633
GT + + D C VFD + N+ L L +R + L IP RI +
Sbjct: 346 GTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQK 405
Query: 634 KRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTAD 691
+ ++ D + I + EG+++K Y+P KR WLK+K +Y++ + D D
Sbjct: 406 TQAHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVS--GLMDELD 463
Query: 692 LVVLGAFYGQGSKGGMMSIFLMGCYD---PGSQK--WCTVTKCAGGHDDATLARLQN-EL 745
++++G ++G+GS+GGMMS FL + PG + + T+++ G T+ L + L
Sbjct: 464 ILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSG---CTMKELYDLGL 520
Query: 746 DMVKISK------DPSKIPSWLKVNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADG 799
+ K K PS I + ++Y +P + + +I AE S+ + G
Sbjct: 521 KLAKYWKPFHRKAPPSSILCGTEKPEVYI------EPCNSVIVQIKAAEIVPSDMYKT-G 573
Query: 800 ISIRFPRCTRIRDDKDWKSATNLPQLKEL 828
++RFPR +IRDDK+W L L++L
Sbjct: 574 CTLRFPRIEKIRDDKEWHECMTLDDLEQL 602
>gi|23199993 DNA ligase IV [Homo sapiens]
Length = 911
Score = 152 bits (385), Expect = 1e-36
Identities = 149/569 (26%), Positives = 260/569 (45%), Gaps = 63/569 (11%)
Query: 300 HGDV----YLTVKLLLPGVIKT--VYNLNDKQIVKLFSRIFNCNPD--DMARDLE----- 346
H DV Y ++L+LP + + Y + + + KL+ + N D D + L
Sbjct: 57 HKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPT 116
Query: 347 --QGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSK---LTKEDEQQQALQDIA 401
GD + + + K K LTIQ+V++ L ++ ++D +++L +
Sbjct: 117 GTHGDAGDFAMIAYFVLKP-RCLQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLI 175
Query: 402 SRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEV 461
++ +A + K +IR+I DLK+ + + +A E + +L+ V R LH+
Sbjct: 176 TQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVC-RQLHDPSVG 234
Query: 462 EKEPGQRRALSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFS-EIKYDGERVQVHKNG 520
+ + +L + +PMLA A +E+ K + F E K DGER+Q+HK+G
Sbjct: 235 LSD--------ISITLFSAFKPMLA-AIADIEHIEKDMKHQSFYIETKLDGERMQMHKDG 285
Query: 521 DHFSYFSRSLKPVLPHKVAH-----FKDYIPQAFPGGHSM-ILDSEVLLIDNKTGKPLPF 574
D + YFSR+ A +I AF + ILD E++ + T +
Sbjct: 286 DVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQK 345
Query: 575 GT-LGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEM 633
GT + + D C VFD + N+ L L +R + L IP RI +
Sbjct: 346 GTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQK 405
Query: 634 KRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTAD 691
+ ++ D + I + EG+++K Y+P KR WLK+K +Y++ + D D
Sbjct: 406 TQAHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVS--GLMDELD 463
Query: 692 LVVLGAFYGQGSKGGMMSIFLMGCYD---PGSQK--WCTVTKCAGGHDDATLARLQN-EL 745
++++G ++G+GS+GGMMS FL + PG + + T+++ G T+ L + L
Sbjct: 464 ILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSG---CTMKELYDLGL 520
Query: 746 DMVKISK------DPSKIPSWLKVNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADG 799
+ K K PS I + ++Y +P + + +I AE S+ + G
Sbjct: 521 KLAKYWKPFHRKAPPSSILCGTEKPEVYI------EPCNSVIVQIKAAEIVPSDMYKT-G 573
Query: 800 ISIRFPRCTRIRDDKDWKSATNLPQLKEL 828
++RFPR +IRDDK+W L L++L
Sbjct: 574 CTLRFPRIEKIRDDKEWHECMTLDDLEQL 602
>gi|148539894 DNA ligase IV [Homo sapiens]
Length = 911
Score = 152 bits (385), Expect = 1e-36
Identities = 149/569 (26%), Positives = 260/569 (45%), Gaps = 63/569 (11%)
Query: 300 HGDV----YLTVKLLLPGVIKT--VYNLNDKQIVKLFSRIFNCNPD--DMARDLE----- 346
H DV Y ++L+LP + + Y + + + KL+ + N D D + L
Sbjct: 57 HKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPT 116
Query: 347 --QGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSK---LTKEDEQQQALQDIA 401
GD + + + K K LTIQ+V++ L ++ ++D +++L +
Sbjct: 117 GTHGDAGDFAMIAYFVLKP-RCLQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLI 175
Query: 402 SRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEV 461
++ +A + K +IR+I DLK+ + + +A E + +L+ V R LH+
Sbjct: 176 TQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVC-RQLHDPSVG 234
Query: 462 EKEPGQRRALSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFS-EIKYDGERVQVHKNG 520
+ + +L + +PMLA A +E+ K + F E K DGER+Q+HK+G
Sbjct: 235 LSD--------ISITLFSAFKPMLA-AIADIEHIEKDMKHQSFYIETKLDGERMQMHKDG 285
Query: 521 DHFSYFSRSLKPVLPHKVAH-----FKDYIPQAFPGGHSM-ILDSEVLLIDNKTGKPLPF 574
D + YFSR+ A +I AF + ILD E++ + T +
Sbjct: 286 DVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQK 345
Query: 575 GT-LGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEM 633
GT + + D C VFD + N+ L L +R + L IP RI +
Sbjct: 346 GTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQK 405
Query: 634 KRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTAD 691
+ ++ D + I + EG+++K Y+P KR WLK+K +Y++ + D D
Sbjct: 406 TQAHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVS--GLMDELD 463
Query: 692 LVVLGAFYGQGSKGGMMSIFLMGCYD---PGSQK--WCTVTKCAGGHDDATLARLQN-EL 745
++++G ++G+GS+GGMMS FL + PG + + T+++ G T+ L + L
Sbjct: 464 ILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSG---CTMKELYDLGL 520
Query: 746 DMVKISK------DPSKIPSWLKVNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADG 799
+ K K PS I + ++Y +P + + +I AE S+ + G
Sbjct: 521 KLAKYWKPFHRKAPPSSILCGTEKPEVYI------EPCNSVIVQIKAAEIVPSDMYKT-G 573
Query: 800 ISIRFPRCTRIRDDKDWKSATNLPQLKEL 828
++RFPR +IRDDK+W L L++L
Sbjct: 574 CTLRFPRIEKIRDDKEWHECMTLDDLEQL 602
>gi|156523968 poly (ADP-ribose) polymerase family, member 1 [Homo
sapiens]
Length = 1014
Score = 53.9 bits (128), Expect = 7e-07
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 87 EMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEK 146
E +++ + V+YAK G A CKKC E I K R+ +V +P + G + WYH C ++
Sbjct: 3 ESSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFD--GKVPHWYHFSCFWKV 60
Query: 147 LERARATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAV 197
R +++ +EL W++ + +K + G+ +K +
Sbjct: 61 GHSIRHPDVEVDGFSELR-WDDQQKVKKTAEAGGVTGKGQDGIGSKAEKTL 110
Score = 49.7 bits (117), Expect = 1e-05
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 93 FCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARA 152
F +YAK + CK C EKI KG R+ K + +P G + WYH C + R
Sbjct: 113 FAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVK--NREEL 170
Query: 153 TTKKIEDLTELEGWEELEDNEKEQITQHIADLSSK 187
+ ++L+G+ L +KE + + + + S+
Sbjct: 171 GFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSE 205
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 38.1 bits (87), Expect = 0.039
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 33/133 (24%)
Query: 790 SKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTVVAGDEGSST 849
S E T ++ P+ T K+A +LP K+ Q S++ + S
Sbjct: 432 SSEEEKTKKMVATTKPKATA-------KAALSLPA-KQAPQGSRDSSS---------DSD 474
Query: 850 TGGSSEENKGPSGSAVSRK--------APSKPSASTKKAEGKLSNSNSKDGNMQTAKPSA 901
+ S EE + S SAV +K APSKP AS KK + + SNS+S D + + +
Sbjct: 475 SSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKP-ASAKKGKAESSNSSSSDDSSEEEE--- 530
Query: 902 MKVGEKLATKSSP 914
EKL K SP
Sbjct: 531 ----EKLKGKGSP 539
Score = 37.7 bits (86), Expect = 0.051
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 840 VVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGK--LSNSNSKDGNMQTA 897
V + ++ S + SSEE K P AV KA +KP + K AE S+S+S + + +
Sbjct: 319 VESSEDSSDESDSSSEEEKKPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSEDDEAPS 378
Query: 898 KPSAMKVGEK----LATKSSPVK 916
KP+ + TKS VK
Sbjct: 379 KPAGTTKNSSNKPAVTTKSPAVK 401
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 37.4 bits (85), Expect = 0.067
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 812 DDKDWKSATNLPQLKELYQ---LSKEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRK 868
DD D K Q + Y LS++ A ++G S +++NK V +
Sbjct: 1291 DDPDKKPQAKQLQTRADYLIKLLSRDLAKKEALSGAGSSKRRKARAKKNKAMKSIKVKEE 1350
Query: 869 APSK----PSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVGEKLATKSSPVKVGEKRKAA 924
S PS + + + KLS S S DG ++ K S + PV + E+ +
Sbjct: 1351 IKSDSSPLPSEKSDEDDDKLSESKS-DGRERSKKSSVSDAPVHITASGEPVPISEESEEL 1409
Query: 925 DE---TLCQTKRRP 935
D+ ++C+ + RP
Sbjct: 1410 DQKTFSICKERMRP 1423
>gi|93102361 palladin [Homo sapiens]
Length = 1106
Score = 36.6 bits (83), Expect = 0.11
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 452 ERVLHNAQE--VEKEPGQRRALSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFSEIKY 509
E +L+N Q +E RR L ++ + +Q E EY + C + SEI+Y
Sbjct: 692 EDLLNNGQPRLTYEERMARRLLGADSATVFNIQEPEEETANQ-EYKVSSCEQRLISEIEY 750
Query: 510 DGERVQVHKNGDHFSY----FSRSLKPVLPHKVAHFK 542
ER V ++GD Y + P K+ H+K
Sbjct: 751 RLERSPVDESGDEVQYGDVPVENGMAPFFEMKLKHYK 787
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 36.6 bits (83), Expect = 0.11
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 377 VDEFLLRLSKLTKE----DEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDA 432
+DE L R++K T+E +EQ Q A+ DL+ +I SG + L
Sbjct: 578 LDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVI----------SGLQEYLGT 627
Query: 433 LDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLM 478
+ A +A R L+D E +L EVE+E Q +++ A M
Sbjct: 628 IKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENM 673
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 36.6 bits (83), Expect = 0.11
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 824 QLKELYQLSKEKADFTVVAGDEGSSTTGGSSEENKGPS--GSAVSRKAPSKPSASTKKAE 881
++ E ++ EK+ +++G+E SS ++ K S S+ S + S S+S + E
Sbjct: 64 KMNENWKKELEKSREKLLSGNESSSKKRERKKKRKKKSCRSSSSSSSSDSSSSSSDSEDE 123
Query: 882 GKLSNSNSKDGNMQTAKPSAMKVGEKLATKSSPVKVGEKRKAADETLCQTKRRPASEQRG 941
K K ++ K S E + VK +K+K+ DET + R S++R
Sbjct: 124 EKKQGKRRKKKKNRSYKSSQSSTHESESESKESVK--KKKKSKDETEKEKDVRSLSKKRK 181
Query: 942 RTVP 945
++ P
Sbjct: 182 KSYP 185
>gi|4885375 histone cluster 1, H1c [Homo sapiens]
Length = 213
Score = 34.7 bits (78), Expect = 0.43
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 845 EGSSTTGGSSEENKGPSGSAVSR------KAPSKPSASTKK----AEGKLSNSNSKDGNM 894
+G+ +G K SG A + P KP + KK A G ++K
Sbjct: 97 KGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPK 156
Query: 895 QTAKPSAMKVGEKLATKSSPVKVGEKRKAADETLCQTKRRPA 936
+ KP+A V +K+A KV + +KAA K + A
Sbjct: 157 KAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKAA 198
>gi|34452681 ring finger protein 10 [Homo sapiens]
Length = 811
Score = 33.9 bits (76), Expect = 0.74
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 836 ADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEG--------KLSNS 887
+D +G SS + GSS+ + P ++ SKP + K + G +LS
Sbjct: 13 SDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYNRKRELSYP 72
Query: 888 NSKDGNMQTAKPSAMKVGEKLATKSSPVKVGEKRKAADETLCQTKRRPASE-QRGRTVPA 946
++ N Q+ + S+ K K K P + G K + +R +E QR PA
Sbjct: 73 KNESFNNQSRRSSSQK--SKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVAEAQRAEFSPA 130
>gi|48255933 high-mobility group nucleosome binding domain 1 [Homo
sapiens]
Length = 100
Score = 33.9 bits (76), Expect = 0.74
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 847 SSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSK--DGNMQTAKPSAMKV 904
SS G + EE K S + +S K P+K A KKA K +S+ K + AK +V
Sbjct: 7 SSAEGAAKEEPKRRS-ARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQAEV 65
Query: 905 GEKLATKSSPVKVGEKRKAADETLCQTKRRPASEQRG 941
+ + P + GE + T+ PAS++ G
Sbjct: 66 ANQETKEDLPAENGETK---------TEESPASDEAG 93
>gi|55749459 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 33.9 bits (76), Expect = 0.74
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 833 KEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKL---SNSNS 889
+ K + T D+ G + ENKG +G K KP + + EGK S
Sbjct: 27 ERKPEVTCTLEDKKLENEGKT--ENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEM 84
Query: 890 KDGNMQTAKPSAMKVGEKLATKSSPVKVGEKRKAADETLCQTKRR 934
+ G+ + KP E S + KR A D+ + KR+
Sbjct: 85 EGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRK 129
>gi|55749442 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 33.9 bits (76), Expect = 0.74
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 833 KEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKL---SNSNS 889
+ K + T D+ G + ENKG +G K KP + + EGK S
Sbjct: 27 ERKPEVTCTLEDKKLENEGKT--ENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEM 84
Query: 890 KDGNMQTAKPSAMKVGEKLATKSSPVKVGEKRKAADETLCQTKRR 934
+ G+ + KP E S + KR A D+ + KR+
Sbjct: 85 EGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRK 129
>gi|65505873 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 33.9 bits (76), Expect = 0.74
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 833 KEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKL---SNSNS 889
+ K + T D+ G + ENKG +G K KP + + EGK S
Sbjct: 27 ERKPEVTCTLEDKKLENEGKT--ENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEM 84
Query: 890 KDGNMQTAKPSAMKVGEKLATKSSPVKVGEKRKAADETLCQTKRR 934
+ G+ + KP E S + KR A D+ + KR+
Sbjct: 85 EGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRK 129
>gi|55749451 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 33.9 bits (76), Expect = 0.74
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 833 KEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKL---SNSNS 889
+ K + T D+ G + ENKG +G K KP + + EGK S
Sbjct: 27 ERKPEVTCTLEDKKLENEGKT--ENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEM 84
Query: 890 KDGNMQTAKPSAMKVGEKLATKSSPVKVGEKRKAADETLCQTKRR 934
+ G+ + KP E S + KR A D+ + KR+
Sbjct: 85 EGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRK 129
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 33.5 bits (75), Expect = 0.97
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 860 PSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQT-AKPSAMKVGEKLATKSSPVKVG 918
P G A A + P+A+ +A S+ K Q+ A+P + + +A SPV G
Sbjct: 5 PIGGAAPATAAASPAAAATEARLHPEGSSRKQQRAQSPARPRDSSLRQTIAATRSPVGAG 64
Query: 919 EKRKAADETLCQTKRRPASEQRGRTVP 945
K + + Q +++ ++ RT P
Sbjct: 65 TKLNSVRQQQLQQQQQQGNKTGSRTGP 91
Score = 32.7 bits (73), Expect = 1.6
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 816 WKSATNLPQLKELYQLSKEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRK----APS 871
WK +L + + L KE+A A + GGSS + SG + A +
Sbjct: 250 WKEGCLQSELIQ-FHLKKERAAAAAAAAQMHAKNGGGSSSRSSPVSGPPAVCETLAVASA 308
Query: 872 KPSASTKKAEGKLSNSNSKDGNMQ-TAKPSAMKVGEKLATKSSPVKVGEKRKAADETL 928
P A+ + + + ++ G MQ A PS+ ++L + + EK + +ETL
Sbjct: 309 SPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQLQEQEEMQEEMEKLREENETL 366
>gi|239757062 PREDICTED: similar to hCG1979072 [Homo sapiens]
Length = 121
Score = 33.5 bits (75), Expect = 0.97
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 851 GGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSK--DGNMQTAKPSAMKVGEKL 908
GG+ EE K S + +S K P+K A KKA K +S+ K + AK +V +
Sbjct: 32 GGAKEEPKRRS-ARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQE 90
Query: 909 ATKSSPVKVGEKRKAADETLCQTKRRPASEQRG 941
+ P + GE + T+ PAS++ G
Sbjct: 91 TKEDLPAENGETK---------TEESPASDEAG 114
>gi|239751572 PREDICTED: similar to hCG1979072 [Homo sapiens]
Length = 121
Score = 33.5 bits (75), Expect = 0.97
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 851 GGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSK--DGNMQTAKPSAMKVGEKL 908
GG+ EE K S + +S K P+K A KKA K +S+ K + AK +V +
Sbjct: 32 GGAKEEPKRRS-ARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQE 90
Query: 909 ATKSSPVKVGEKRKAADETLCQTKRRPASEQRG 941
+ P + GE + T+ PAS++ G
Sbjct: 91 TKEDLPAENGETK---------TEESPASDEAG 114
>gi|239746084 PREDICTED: similar to hCG1979072 [Homo sapiens]
Length = 121
Score = 33.5 bits (75), Expect = 0.97
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 851 GGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSK--DGNMQTAKPSAMKVGEKL 908
GG+ EE K S + +S K P+K A KKA K +S+ K + AK +V +
Sbjct: 32 GGAKEEPKRRS-ARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQE 90
Query: 909 ATKSSPVKVGEKRKAADETLCQTKRRPASEQRG 941
+ P + GE + T+ PAS++ G
Sbjct: 91 TKEDLPAENGETK---------TEESPASDEAG 114
>gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F
subunit [Homo sapiens]
Length = 1977
Score = 33.5 bits (75), Expect = 0.97
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 521 DHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVH 580
D+F Y +R + PH + FK + PG I +V+ + + PL FG L H
Sbjct: 1442 DNFDYLTRDWSILGPHHLDEFKRIWSEYDPGAKGRIKHLDVVALLRRIQPPLGFGKLCPH 1501
Query: 581 KKA 583
+ A
Sbjct: 1502 RVA 1504
>gi|4885373 histone cluster 1, H1a [Homo sapiens]
Length = 215
Score = 33.5 bits (75), Expect = 0.97
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 858 KGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVGEKLATKSSPVKV 917
K +A S+K P+ PS S + S+ ++ K + G + +S +K+
Sbjct: 26 KPAKAAAASKKKPAGPSVSELIVQAASSSKERGGVSLAALKKALAAAGYDVEKNNSRIKL 85
Query: 918 GEKRKAADETLCQTKRRPAS 937
G K + TL QTK AS
Sbjct: 86 GIKSLVSKGTLVQTKGTGAS 105
>gi|11761629 fibrinogen, alpha polypeptide isoform alpha
preproprotein [Homo sapiens]
Length = 644
Score = 33.1 bits (74), Expect = 1.3
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 815 DWKSATNLPQLKELYQLSKEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPS 874
+WK+ T++PQ++ + E+ + G ST+ G+ E + P + PS
Sbjct: 247 EWKALTDMPQMR----MELERPGGNEIT--RGGSTSYGTGSETESP-------RNPSSAG 293
Query: 875 ASTKKAEGKLSNSNSKDGNMQTAKPSAMKVGEKLATKSSPVKVGEKRKAADETLCQTKRR 934
+ + G S N G+ T + K G S P G + T +
Sbjct: 294 SWNSGSSGPGSTGNRNPGSSGTGGTATWKPG-----SSGPGSTGSWNSGSSGTGSTGNQN 348
Query: 935 PASEQRGRT 943
P S + G T
Sbjct: 349 PGSPRPGST 357
>gi|4503689 fibrinogen, alpha polypeptide isoform alpha-E
preproprotein [Homo sapiens]
Length = 866
Score = 33.1 bits (74), Expect = 1.3
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 815 DWKSATNLPQLKELYQLSKEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPS 874
+WK+ T++PQ++ + E+ + G ST+ G+ E + P + PS
Sbjct: 247 EWKALTDMPQMR----MELERPGGNEIT--RGGSTSYGTGSETESP-------RNPSSAG 293
Query: 875 ASTKKAEGKLSNSNSKDGNMQTAKPSAMKVGEKLATKSSPVKVGEKRKAADETLCQTKRR 934
+ + G S N G+ T + K G S P G + T +
Sbjct: 294 SWNSGSSGPGSTGNRNPGSSGTGGTATWKPG-----SSGPGSTGSWNSGSSGTGSTGNQN 348
Query: 935 PASEQRGRT 943
P S + G T
Sbjct: 349 PGSPRPGST 357
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 33.1 bits (74), Expect = 1.3
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 801 SIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEK---ADFTVV--AGDEGSSTTGG--S 853
S R P T+ +D D KS K + S EK D T + GSS+T S
Sbjct: 22 STRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSS 80
Query: 854 SEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVG--EKLATK 911
S + G S S S S SAS++ S S+S + + PS + + +K
Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
Query: 912 SSPVKVGEKRK 922
S P K EK +
Sbjct: 141 SKPPKRDEKER 151
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 33.1 bits (74), Expect = 1.3
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 801 SIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEK---ADFTVV--AGDEGSSTTGG--S 853
S R P T+ +D D KS K + S EK D T + GSS+T S
Sbjct: 22 STRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSS 80
Query: 854 SEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVG--EKLATK 911
S + G S S S S SAS++ S S+S + + PS + + +K
Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
Query: 912 SSPVKVGEKRK 922
S P K EK +
Sbjct: 141 SKPPKRDEKER 151
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 33.1 bits (74), Expect = 1.3
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 801 SIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEK---ADFTVV--AGDEGSSTTGG--S 853
S R P T+ +D D KS K + S EK D T + GSS+T S
Sbjct: 22 STRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80
Query: 854 SEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVG--EKLATK 911
S + G S S S S SAS++ S S+S + + PS + + +K
Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
Query: 912 SSPVKVGEKRK 922
S P K EK +
Sbjct: 141 SKPPKRDEKER 151
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,275,276
Number of Sequences: 37866
Number of extensions: 1735144
Number of successful extensions: 7262
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 6978
Number of HSP's gapped (non-prelim): 339
length of query: 949
length of database: 18,247,518
effective HSP length: 112
effective length of query: 837
effective length of database: 14,006,526
effective search space: 11723462262
effective search space used: 11723462262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.