HMGN1 30946

Name: HMGN1	Sequence: fasta or formatted (100aa)		NCBI GI: 48255933
Description: high-mobility group nucleosome binding domain 1		Referenced in: Nonhistone Chromosomal Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 17.0 17 3 C cysteine 0.0 0 0 D aspartate 5.0 5 1 E glutamate 14.0 14 2 F phenylalanine 0.0 0 0 G glycine 6.0 6 1 H histidine 0.0 0 0 I isoleucine 0.0 0 0 K lysine 21.0 21 2 L leucine 2.0 2 1 M methionine 1.0 1 1 N asparagine 2.0 2 1 P proline 7.0 7 2 Q glutamine 3.0 3 1 R arginine 5.0 5 2 S serine 9.0 9 2 T threonine 4.0 4 1 V valine 4.0 4 1 W tryptophan 0.0 0 0 Y tyrosine 0.0 0 0			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 high-mobility group nucleosome binding domain 1 [Hom... LOC100132992 0.871 PREDICTED: similar to hCG1979072 LOC100132992 0.871 PREDICTED: similar to hCG1979072 LOC100132992 0.871 PREDICTED: similar to hCG1979072 LOC728111 0.618 PREDICTED: hypothetical protein LOC728111 0.618 PREDICTED: hypothetical protein LOC728111 0.618 PREDICTED: hypothetical protein HMGN3 0.265 high mobility group nucleosomal binding domain 3 iso... HMGN2 0.247 high-mobility group nucleosomal binding domain 2 [Hom... LOC729687 0.218 PREDICTED: similar to high-mobility group nucleosom... LOC729687 0.218 PREDICTED: similar to high-mobility group nucleosom... LOC729687 0.218 PREDICTED: similar to high-mobility group nucleosom... LOC729505 0.212 PREDICTED: hypothetical protein LOC729505 0.212 PREDICTED: hypothetical protein LOC729505 0.212 PREDICTED: hypothetical protein NSBP1 0.212 nucleosomal binding protein 1 LOC646853 0.206 PREDICTED: similar to high-mobility group nucleosom... LOC646853 0.206 PREDICTED: similar to high-mobility group nucleosom... LOC646853 0.206 PREDICTED: similar to high-mobility group nucleosom... LOC648822 0.194 PREDICTED: similar to hCG2040565 LOC648822 0.194 PREDICTED: similar to hCG2040565 LOC648822 0.194 PREDICTED: similar to hCG2040565 LOC100293829 0.194 PREDICTED: similar to hCG2040565 LOC100288691 0.194 PREDICTED: similar to hCG2040565 LOC100288691 0.194 PREDICTED: hypothetical protein XP_002343066 LOC644992 0.188 PREDICTED: hypothetical protein LOC644992 0.188 PREDICTED: hypothetical protein LOC644992 0.188 PREDICTED: hypothetical protein LOC100292625 0.182 PREDICTED: similar to hCG2040565 LOC100291244 0.182 PREDICTED: hypothetical protein XP_002348261 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.