Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 72534716

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|72534716 coiled-coil domain containing 90A [Homo sapiens]
         (359 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|72534716 coiled-coil domain containing 90A [Homo sapiens]          697   0.0  
gi|20149663 coiled-coil domain containing 90B [Homo sapiens]          228   6e-60
gi|190341068 forkhead-associated (FHA) phosphopeptide binding do...    42   0.001
gi|81295816 nasopharyngeal epithelium specific protein 1 [Homo s...    42   0.001
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]     40   0.002
gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]               38   0.012
gi|55770834 centromere protein F [Homo sapiens]                        38   0.016
gi|7657138 golgi integral membrane protein 4 [Homo sapiens]            37   0.021
gi|169178850 PREDICTED: similar to coiled-coil domain containing...    37   0.027
gi|31542661 transmembrane protein 57 [Homo sapiens]                    37   0.027
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ...    37   0.027
gi|58530842 desmoplakin isoform II [Homo sapiens]                      37   0.036
gi|15431310 keratin 14 [Homo sapiens]                                  37   0.036
gi|151101151 coiled-coil domain containing 2 isoform b [Homo sap...    36   0.047
gi|151101140 coiled-coil domain containing 2 isoform a [Homo sap...    36   0.047
gi|151105223 coiled-coil domain containing 2 isoform a [Homo sap...    36   0.047
gi|151105229 coiled-coil domain containing 2 isoform a [Homo sap...    36   0.047
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]    36   0.061
gi|149363642 coiled-coil domain containing 144A [Homo sapiens]         35   0.080
gi|215490011 small inducible cytokine subfamily E, member 1 isof...    35   0.10 
gi|215490009 small inducible cytokine subfamily E, member 1 isof...    35   0.10 
gi|45006986 small inducible cytokine subfamily E, member 1 isofo...    35   0.10 
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ...    35   0.10 
gi|239749325 PREDICTED: hypothetical protein [Homo sapiens]            35   0.10 
gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ...    35   0.10 
gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo ...    35   0.10 
gi|239509122 PREDICTED: hypothetical protein [Homo sapiens]            35   0.10 
gi|4506967 v-ski sarcoma viral oncogene homolog [Homo sapiens]         35   0.14 
gi|239747109 PREDICTED: hypothetical protein XP_002344496 [Homo ...    35   0.14 
gi|126362971 serine/threonine kinase 10 [Homo sapiens]                 35   0.14 

>gi|72534716 coiled-coil domain containing 90A [Homo sapiens]
          Length = 359

 Score =  697 bits (1800), Expect = 0.0
 Identities = 359/359 (100%), Positives = 359/359 (100%)

Query: 1   MDCGSVGGQRTQRLPGRQRLLFLPVGLSGRPGGSETSARRCLSALSDGLGALRPRAPAAR 60
           MDCGSVGGQRTQRLPGRQRLLFLPVGLSGRPGGSETSARRCLSALSDGLGALRPRAPAAR
Sbjct: 1   MDCGSVGGQRTQRLPGRQRLLFLPVGLSGRPGGSETSARRCLSALSDGLGALRPRAPAAR 60

Query: 61  GGVSRASPLLLLLLVPSPRLAAAAPRRQLGDWERSRLGYAAPPAGRSSAWRCSPGVAAAA 120
           GGVSRASPLLLLLLVPSPRLAAAAPRRQLGDWERSRLGYAAPPAGRSSAWRCSPGVAAAA
Sbjct: 61  GGVSRASPLLLLLLVPSPRLAAAAPRRQLGDWERSRLGYAAPPAGRSSAWRCSPGVAAAA 120

Query: 121 GALPQYHGPAPALVSCRRELSLSAGSLQLERKRRDFTSSGSRKLYFDTHALVCLLEDNGF 180
           GALPQYHGPAPALVSCRRELSLSAGSLQLERKRRDFTSSGSRKLYFDTHALVCLLEDNGF
Sbjct: 121 GALPQYHGPAPALVSCRRELSLSAGSLQLERKRRDFTSSGSRKLYFDTHALVCLLEDNGF 180

Query: 181 ATQQAEIIVSALVKILEANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKSEFS 240
           ATQQAEIIVSALVKILEANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKSEFS
Sbjct: 181 ATQQAEIIVSALVKILEANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKSEFS 240

Query: 241 ALRAENEKIKLELHQLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEI 300
           ALRAENEKIKLELHQLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEI
Sbjct: 241 ALRAENEKIKLELHQLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEI 300

Query: 301 VALHAQQDRALTQTDRKIETEVAGLKTMLESHKLDNIKYLAGSIFTCLTVALGFYRLWI 359
           VALHAQQDRALTQTDRKIETEVAGLKTMLESHKLDNIKYLAGSIFTCLTVALGFYRLWI
Sbjct: 301 VALHAQQDRALTQTDRKIETEVAGLKTMLESHKLDNIKYLAGSIFTCLTVALGFYRLWI 359


>gi|20149663 coiled-coil domain containing 90B [Homo sapiens]
          Length = 254

 Score =  228 bits (581), Expect = 6e-60
 Identities = 117/229 (51%), Positives = 160/229 (69%), Gaps = 3/229 (1%)

Query: 130 APALVSCRRELSLSAGSLQLERKRRDFTSSGSRKLYFDTHALVCLLEDNGFATQQAEIIV 189
           +PAL   RRE   +      +R+  D T    RKL FDTHALV  LE +GF   QAE IV
Sbjct: 28  SPAL---RREFFTTTTKEGYDRRPVDITPLEQRKLTFDTHALVQDLETHGFDKTQAETIV 84

Query: 190 SALVKILEANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKSEFSALRAENEKI 249
           SAL  +   ++D +YK+MVT+ QQEIT QQ+M+ +  ++KDM+ILEKSEF+ LRAENEK+
Sbjct: 85  SALTALSNVSLDTIYKEMVTQAQQEITVQQLMAHLDAIRKDMVILEKSEFANLRAENEKM 144

Query: 250 KLELHQLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQQDR 309
           K+EL Q+KQQ+M E  ++R D KLD NLE+SRV ++++  EK+L+E  TE      Q   
Sbjct: 145 KIELDQVKQQLMHETSRIRADNKLDINLERSRVTDMFTDQEKQLMETTTEFTKKDTQTKS 204

Query: 310 ALTQTDRKIETEVAGLKTMLESHKLDNIKYLAGSIFTCLTVALGFYRLW 358
            +++T  KI+ E+A LKT++ES+KL+ I+YLA S+FTCL +ALGFYR W
Sbjct: 205 IISETSNKIDAEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYRFW 253


>gi|190341068 forkhead-associated (FHA) phosphopeptide binding domain
            1 [Homo sapiens]
          Length = 1412

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 52/201 (25%), Positives = 95/201 (47%), Gaps = 22/201 (10%)

Query: 125  QYHGPAPALVSCRRELSLSAGSL-QLERKRRDFTSSGSRKLYFDTHALVCLLEDNGFATQ 183
            Q HG    ++  + ++   A ++  LE K +  T    +         +  L+DN  A +
Sbjct: 914  QRHGFEEEIMEYKEQIKQHAQTIVSLEEKLQKVTQHHKK-----IEGEIATLKDNDPAPK 968

Query: 184  QAEIIVSALVKILEANM-DIVYKDMVTKM---QQEITFQQVMSQIANVKKDMIILEKSEF 239
            +       +  + E++  D+ Y+ ++  +   Q+EI  QQ +  I  ++KD+     S  
Sbjct: 969  EERPQDPLVAPMTESSAKDMAYEHLIDDLLAAQKEILSQQEV--IMKLRKDLTEAH-SRM 1025

Query: 240  SALRAE-NEKIKLELHQLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRT 298
            S LR E NEK K+EL Q        V+ V+  +K + ++ K ++ ++ SL EKK  EL+ 
Sbjct: 1026 SDLRGELNEKQKMELEQ-------NVVLVQQQSK-ELSVLKEKMAQMSSLVEKKDRELKA 1077

Query: 299  EIVALHAQQDRALTQTDRKIE 319
               AL A Q++   Q + + E
Sbjct: 1078 LEEALRASQEKHRLQLNTEKE 1098


>gi|81295816 nasopharyngeal epithelium specific protein 1 [Homo
           sapiens]
          Length = 551

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 41/203 (20%)

Query: 148 QLERKRRDFTSSGSRKLYFDTHALVCLLEDNGFATQQAEIIVSALVKILEANMDIVYKDM 207
           +LERKRR+    G R++      +    E+     +Q E     +++ +E   +   KDM
Sbjct: 245 ELERKRREERIRGRRQI---VEQMEKNQEERSLLAEQREQEKEQMLEYMEQLQEEDLKDM 301

Query: 208 VTKMQQEITFQQVMSQIANVKKDMIILEKSEFSALRAENEKIKLEL---HQLKQQVMDEV 264
             + QQ++  Q                  +E   +  EN+K K EL    +L  Q++ E 
Sbjct: 302 ERRQQQKLKMQ------------------AEIKRINDENQKQKAELLAQEKLADQMVMEF 343

Query: 265 IKVRTDTKLDFNLEKSRV-----KELYSLN--EKKLLELRTEIVALHAQQDRALTQTD-- 315
            K +   + +F  E+ R+     KE+  L   ++K  + + E  AL A++++ +   +  
Sbjct: 344 TKKKMAREAEFEAEQERIRREKEKEIARLRAMQEKAQDYQAEQDALRAKRNQEVADREWR 403

Query: 316 --------RKIETEVAGLKTMLE 330
                   +K+ETE    K+ LE
Sbjct: 404 RKEKENARKKMETEAELRKSRLE 426


>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
          Length = 2230

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 11/134 (8%)

Query: 214  EITFQQVMSQIANVKKDMIIL--EKSEFSA----LRAENEKIKLELHQLKQQVMDEVIKV 267
            EI  Q+   ++A +K+ +++   EK E +     L+ E  K    L++L++Q+  +   V
Sbjct: 1063 EIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEEGVKQDTTLNELQEQLKQKSAHV 1122

Query: 268  RT----DTKLDFNLEKSRVKELYSLNEKKLL-ELRTEIVALHAQQDRALTQTDRKIETEV 322
             +    +TKL  +LEK  V    SL E   L E   E+  L  +  R +++   K++T  
Sbjct: 1123 NSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKTTD 1182

Query: 323  AGLKTMLESHKLDN 336
               +++  SH+  N
Sbjct: 1183 EEFQSLKSSHEKSN 1196


>gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]
          Length = 1946

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 242  LRAENEKIKLELHQLKQQV---------MDEVIKVRTDTKLDFNLEKSRVKELYSLNEKK 292
            LR EN+ ++ E+  L  QV         M++V K+  + K +  +     +     NE K
Sbjct: 1510 LRRENKNLQEEISNLTNQVREGTKNLTEMEKVKKLIEEEKTEVQVTLEETEGALERNESK 1569

Query: 293  LLELRTEIVALHAQQDRALTQTDRKIE 319
            +L  + E++   A+ +R L++ D +IE
Sbjct: 1570 ILHFQLELLEAKAELERKLSEKDEEIE 1596



 Score = 32.3 bits (72), Expect = 0.67
 Identities = 46/211 (21%), Positives = 92/211 (43%), Gaps = 11/211 (5%)

Query: 121  GALPQYHGPAPALVSCRRELSLSAGSLQLERKRRDFTSSGSRKLYFDTHALVCLLEDNGF 180
            GAL Q      A ++C REL    G+L+L R+  +   S  R L  +       L     
Sbjct: 1048 GALEQER---KARMNCERELHKLEGNLKLNRESMENLESSQRHLAEELRKKELELSQMNS 1104

Query: 181  ATQQAEIIVSALVKILEANMDIVYKDMVTKMQQEITFQQVMS-QIANVKKDMIILEKSEF 239
              +  + +V+ L K ++  +    KD+  K++ E T +  M  + A++ +D+  L  +E 
Sbjct: 1105 KVENEKGLVAQLQKTVK-ELQTQIKDLKEKLEAERTTRAKMERERADLTQDLADL--NER 1161

Query: 240  SALRAENEKIKLELHQLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTE 299
                  +   +LE+ + ++    ++ +   +  L F    + +K+ ++     L EL  +
Sbjct: 1162 LEEVGGSSLAQLEITKKQETKFQKLHRDMEEATLHFETTSASLKKRHA---DSLAELEGQ 1218

Query: 300  IVALHAQQDRALTQTDRKIETEVAGLKTMLE 330
            +  L  Q  + L +    ++ EV  L T +E
Sbjct: 1219 VENLQ-QVKQKLEKDKSDLQLEVDDLLTRVE 1248


>gi|55770834 centromere protein F [Homo sapiens]
          Length = 3114

 Score = 37.7 bits (86), Expect = 0.016
 Identities = 40/193 (20%), Positives = 94/193 (48%), Gaps = 31/193 (16%)

Query: 176 EDNGFATQQAEIIVSALVKILEANMDIVYK---------DMVTKMQQEITFQQVMSQIAN 226
           ++N    ++ ++ V+ L K  + + D++ K         D ++K ++E   + ++S +  
Sbjct: 547 QENSLTLEKLKLAVADLEKQRDCSQDLLKKREHHIEQLNDKLSKTEKES--KALLSALEL 604

Query: 227 VKKDMIIL--EKSEFSALRAENEKIKLELHQLKQQVMDEVIKVRTDTKL------DFN-- 276
            KK+   L  EK+ FS  ++ENEK+  ++   K+ +  ++  + T  K       ++N  
Sbjct: 605 KKKEYEELKEEKTLFSCWKSENEKLLTQMESEKENLQSKINHLETCLKTQQIKSHEYNER 664

Query: 277 ---LEKSR------VKELYSLNEKKLLELRTEIVA-LHAQQDRALTQTDRKIETEVAGLK 326
              LE  R      ++ L+++ + K +E+ T+ +A +  QQ    +    + E E   LK
Sbjct: 665 VRTLEMDRENLSVEIRNLHNVLDSKSVEVETQKLAYMELQQKAEFSDQKHQKEIENMCLK 724

Query: 327 TMLESHKLDNIKY 339
           T   + +++++++
Sbjct: 725 TSQLTGQVEDLEH 737



 Score = 32.3 bits (72), Expect = 0.67
 Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 212 QQEITFQQVMSQIANVKKDMIILEKSE----FSALRAENEKIKLELHQLKQQVMDEVIKV 267
           +QE+T  +   QI     +    + S        L+A+N++++ ++++L+ ++     ++
Sbjct: 249 EQEVTPSRSTLQIGKRDANSSFFDNSSSPHLLDQLKAQNQELRNKINELELRLQGHEKEM 308

Query: 268 RTDT----KLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQQDRALTQ 313
           +       +L   LEK++V+ +    EK L + R E+V   AQ D+A T+
Sbjct: 309 KGQVNKFQELQLQLEKAKVELIEK--EKVLNKCRDELVRTTAQYDQASTK 356



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 22/97 (22%), Positives = 54/97 (55%), Gaps = 11/97 (11%)

Query: 208 VTKMQQEITFQQ-----VMSQIANVKKDMIILEKSEFSALRAENEKIKLELHQLKQQVMD 262
           ++K+Q++ +  Q      +S + N +K++ +L   +    +AE +++K   H L+  + +
Sbjct: 885 ISKLQEDTSAHQNVVAETLSALENKEKELQLLN-DKVETEQAEIQELKKSNHLLEDSLKE 943

Query: 263 EVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTE 299
             +++ ++T    +LEK  +  + SLN++++ EL  E
Sbjct: 944 --LQLLSET---LSLEKKEMSSIISLNKREIEELTQE 975


>gi|7657138 golgi integral membrane protein 4 [Homo sapiens]
          Length = 696

 Score = 37.4 bits (85), Expect = 0.021
 Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 24/155 (15%)

Query: 196 LEANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILE--------------KSEFSA 241
           L A + +VY+    + + E + Q+   +    K+D ++ +               S +SA
Sbjct: 57  LSAQLQVVYEH---RSRLEKSLQKERLEHKKAKEDFLVYKLEAQETLNKGRQDSNSRYSA 113

Query: 242 LRAENEKIKLELHQLKQQVMD---EVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRT 298
           L  +++ +K +  +LK+Q  D   E  K   D    FN  K +  +L    E++L +L+ 
Sbjct: 114 LNVQHQMLKSQHEELKKQHSDLEEEHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKE 173

Query: 299 EIVALHAQQDRALTQTDRKIETEVAGLKTMLESHK 333
            +  L  +++R L +  + I T++  +K   + HK
Sbjct: 174 TVYNLR-EENRQLRKAHQDIHTQLQDVK---QQHK 204


>gi|169178850 PREDICTED: similar to coiled-coil domain containing 29
           [Homo sapiens]
          Length = 197

 Score = 37.0 bits (84), Expect = 0.027
 Identities = 31/137 (22%), Positives = 72/137 (52%), Gaps = 5/137 (3%)

Query: 193 VKILEANMDIVYKDMVTKMQQEITFQQ-VMSQIANVKKDMIILEKSEFSALRAENEKIKL 251
           +K  +  MDI+ K +  K    +  ++ V S+  N+ KD  ++++   S  + + E  KL
Sbjct: 20  LKTDQLKMDILIKKLKQKFDDLMAEEEAVSSKCVNLSKDNQVIQQELLSMKKVQQECEKL 79

Query: 252 ELHQLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQQD-RA 310
           E +Q  + + +E++ ++T  + +  +E S+++E  S  +++ ++   ++  +H Q +   
Sbjct: 80  EENQ--KMLEEEILNLKTHME-NSMVELSKLQEYKSELDERAMQAVEKLKEIHLQMELDC 136

Query: 311 LTQTDRKIETEVAGLKT 327
           + Q  R+ +  VA L T
Sbjct: 137 VEQIIRETKRTVAVLDT 153


>gi|31542661 transmembrane protein 57 [Homo sapiens]
          Length = 664

 Score = 37.0 bits (84), Expect = 0.027
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 13/158 (8%)

Query: 191 ALVKILEANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKSEFSALRAENEKIK 250
           ALV+ LE ++  +  D+    Q E   +  +S +++ ++ +    +SE   LR ENE ++
Sbjct: 382 ALVR-LEQDIKKLKADLQASRQVEQELRSQISSLSSTERGI----RSEMGQLRQENELLQ 436

Query: 251 LELH---QLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRT--EIVALHA 305
            +LH   Q+KQ+    + ++    K +        K+L    ++K LE  T    VA  A
Sbjct: 437 NKLHNAVQMKQKDKQNISQLEKKLKAEQEARSFVEKQLMEEKKRKKLEEATAARAVAFAA 496

Query: 306 QQDRALTQT--DRKIETEVAGLK-TMLESHKLDNIKYL 340
                 T+T  +R  E E  G K TM    K D I+ L
Sbjct: 497 ASRGECTETLRNRIRELEAEGKKLTMDMKVKEDQIREL 534


>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
            transmembrane signal), 1 [Homo sapiens]
          Length = 3259

 Score = 37.0 bits (84), Expect = 0.027
 Identities = 33/149 (22%), Positives = 71/149 (47%), Gaps = 20/149 (13%)

Query: 197  EANMDIVYKDMVTKMQQEITFQQ---VMSQIANVKKDMIILEKSE------FSALRAENE 247
            + N  I  KD   K   E+  QQ   + ++ A +++ +   E++       F+AL+ E +
Sbjct: 2539 DLNQVITIKDSQQKQLLEVQLQQNKELENKYAKLEEKLKESEEANEDLRRSFNALQEEKQ 2598

Query: 248  KIKLELHQLK---QQVMDEVIKVRTDTKLDFNLEKSRVKE--------LYSLNEKKLLEL 296
             +  E+  LK    Q+  +V  ++ +  L     + +VKE        L+S ++K++ EL
Sbjct: 2599 DLSKEIESLKVSISQLTRQVTALQEEGTLGLYHAQLKVKEEEVHRLSALFSSSQKRIAEL 2658

Query: 297  RTEIVALHAQQDRALTQTDRKIETEVAGL 325
              E+V +  +  + + + + K++ E+  L
Sbjct: 2659 EEELVCVQKEAAKKVGEIEDKLKKELKHL 2687



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 17/154 (11%)

Query: 189  VSALVKILEANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDM-------IILEKSEFSA 241
            +SAL + ++A   + +    ++   EIT + +   + + KK         ++L+ ++  A
Sbjct: 2035 ISALERTVKA---LEFVQTESQKDLEITKENLAQAVEHRKKAQAELASFKVLLDDTQSEA 2091

Query: 242  LR--AENEKIKLELHQLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLN--EKKLLELR 297
             R  A+N K+K EL   K+ V  ++   + D  L+  LE++  K L      ++KL  LR
Sbjct: 2092 ARVLADNLKLKKELQSNKESVKSQM--KQKDEDLERRLEQAEEKHLKEKKNMQEKLDALR 2149

Query: 298  TEIVALHAQQDRALTQTDRKIETEVAGLKTMLES 331
             E V L  +    +  T  K + EV  L+  L+S
Sbjct: 2150 REKVHLE-ETIGEIQVTLNKKDKEVQQLQENLDS 2182


>gi|58530842 desmoplakin isoform II [Homo sapiens]
          Length = 2272

 Score = 36.6 bits (83), Expect = 0.036
 Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 28/198 (14%)

Query: 139  ELSLSAGSLQLERKRRDFTSSGSRKLYFDTHALVC---LLEDNGFATQQAEIIVSALVKI 195
            E ++     ++ER R      G+RK  ++         + E     TQ  +   S LVKI
Sbjct: 1161 EKAIKEKEYEIERLRVLLQEEGTRKREYENELAKASNRIQESKNQCTQVVQERESLLVKI 1220

Query: 196  LEANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKSEFSALRAENEKIKLELHQ 255
                 D   K  + +++ E+          N  K  +  E      L  E ++I+ +L+Q
Sbjct: 1221 KVLEQD---KARLQRLEDEL----------NRAKSTLEAETRVKQRLECEKQQIQNDLNQ 1267

Query: 256  LKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQQDRALTQTD 315
             K Q   +   +R   K++   EKS         E++   LR+EI  L A+  R   +  
Sbjct: 1268 WKTQYSRKEEAIR---KIESEREKS---------EREKNSLRSEIERLQAEIKRIEERCR 1315

Query: 316  RKIETEVAGLKTMLESHK 333
            RK+E      ++ LE+ +
Sbjct: 1316 RKLEDSTRETQSQLETER 1333


>gi|15431310 keratin 14 [Homo sapiens]
          Length = 472

 Score = 36.6 bits (83), Expect = 0.036
 Identities = 31/147 (21%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 204 YKDMVTKMQQE-----ITFQQVMSQIANVKKDMIILEKSEFSALRAENEKIKLELHQLKQ 258
           Y+ M  K +++      T  + +++      +++   KSE S LR   + +++EL Q + 
Sbjct: 291 YEKMAEKNRKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIEL-QSQL 349

Query: 259 QVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQQDRALTQTDRKI 318
            +   +     +TK  + ++ ++++E+    E++L +LR E+   + Q+ + L     ++
Sbjct: 350 SMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQN-QEYKILLDVKTRL 408

Query: 319 ETEVAGLKTMLESH--KLDNIKYLAGS 343
           E E+A  + +LE     L + ++ +GS
Sbjct: 409 EQEIATYRRLLEGEDAHLSSSQFSSGS 435


>gi|151101151 coiled-coil domain containing 2 isoform b [Homo
           sapiens]
          Length = 372

 Score = 36.2 bits (82), Expect = 0.047
 Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 15/142 (10%)

Query: 199 NMDIVYKDMVTKMQQ----EITFQQVMSQIANVKKDMIILEKSEFSALRAENEKIKLELH 254
           ++D+++ +   K +Q    E   +Q      ++ K+M    + ++  ++  NEK+  EL 
Sbjct: 186 SLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQELD 245

Query: 255 QLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQQDRALTQT 314
            L+QQ+  + +K  +   L+  +  S+VK+   L  +KL EL +     H  Q   +   
Sbjct: 246 TLQQQLDSQNMKKES---LEAEIAHSQVKQEAVLLHEKLYELES-----HRDQ---MIAE 294

Query: 315 DRKIETEVAGLKTMLESHKLDN 336
           D+ I + +   + +L+  K DN
Sbjct: 295 DKSIGSPMEEREKLLKQIKDDN 316


>gi|151101140 coiled-coil domain containing 2 isoform a [Homo
           sapiens]
          Length = 600

 Score = 36.2 bits (82), Expect = 0.047
 Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 15/142 (10%)

Query: 199 NMDIVYKDMVTKMQQ----EITFQQVMSQIANVKKDMIILEKSEFSALRAENEKIKLELH 254
           ++D+++ +   K +Q    E   +Q      ++ K+M    + ++  ++  NEK+  EL 
Sbjct: 186 SLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQELD 245

Query: 255 QLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQQDRALTQT 314
            L+QQ+  + +K  +   L+  +  S+VK+   L  +KL EL +     H  Q   +   
Sbjct: 246 TLQQQLDSQNMKKES---LEAEIAHSQVKQEAVLLHEKLYELES-----HRDQ---MIAE 294

Query: 315 DRKIETEVAGLKTMLESHKLDN 336
           D+ I + +   + +L+  K DN
Sbjct: 295 DKSIGSPMEEREKLLKQIKDDN 316


>gi|151105223 coiled-coil domain containing 2 isoform a [Homo
           sapiens]
          Length = 600

 Score = 36.2 bits (82), Expect = 0.047
 Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 15/142 (10%)

Query: 199 NMDIVYKDMVTKMQQ----EITFQQVMSQIANVKKDMIILEKSEFSALRAENEKIKLELH 254
           ++D+++ +   K +Q    E   +Q      ++ K+M    + ++  ++  NEK+  EL 
Sbjct: 186 SLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQELD 245

Query: 255 QLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQQDRALTQT 314
            L+QQ+  + +K  +   L+  +  S+VK+   L  +KL EL +     H  Q   +   
Sbjct: 246 TLQQQLDSQNMKKES---LEAEIAHSQVKQEAVLLHEKLYELES-----HRDQ---MIAE 294

Query: 315 DRKIETEVAGLKTMLESHKLDN 336
           D+ I + +   + +L+  K DN
Sbjct: 295 DKSIGSPMEEREKLLKQIKDDN 316


>gi|151105229 coiled-coil domain containing 2 isoform a [Homo
           sapiens]
          Length = 600

 Score = 36.2 bits (82), Expect = 0.047
 Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 15/142 (10%)

Query: 199 NMDIVYKDMVTKMQQ----EITFQQVMSQIANVKKDMIILEKSEFSALRAENEKIKLELH 254
           ++D+++ +   K +Q    E   +Q      ++ K+M    + ++  ++  NEK+  EL 
Sbjct: 186 SLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQELD 245

Query: 255 QLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQQDRALTQT 314
            L+QQ+  + +K  +   L+  +  S+VK+   L  +KL EL +     H  Q   +   
Sbjct: 246 TLQQQLDSQNMKKES---LEAEIAHSQVKQEAVLLHEKLYELES-----HRDQ---MIAE 294

Query: 315 DRKIETEVAGLKTMLESHKLDN 336
           D+ I + +   + +L+  K DN
Sbjct: 295 DKSIGSPMEEREKLLKQIKDDN 316


>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
          Length = 1498

 Score = 35.8 bits (81), Expect = 0.061
 Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 18/211 (8%)

Query: 137  RRELSLSAGSLQLERKRRDFTSSGSRKLYFDTHALVCLLEDNGFATQQAEIIVSALVKI- 195
            R+ ++   G LQ  +K RD   +  + L FD   +V + E N    +Q E +     K  
Sbjct: 912  RQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAI 971

Query: 196  ---------LEANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKSEFSALRAE- 245
                     L +++    K+M TK +       ++S+             +E   LRA+ 
Sbjct: 972  TEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQG 1031

Query: 246  -NEKIKLELHQLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVAL- 303
             +    L LH+  Q +  E+  V     L   LEK  ++E+ +L  ++L E R +++ L 
Sbjct: 1032 GSSDSSLALHERIQALEAELQAVSHSKTL---LEK-ELQEVIALTSQELEESREKVLELE 1087

Query: 304  -HAQQDRALTQTDRKIETEVAGLKTMLESHK 333
               Q+ R   +  +++E     L   LE  K
Sbjct: 1088 DELQESRGFRKKIKRLEESNKKLALELEHEK 1118


>gi|149363642 coiled-coil domain containing 144A [Homo sapiens]
          Length = 1427

 Score = 35.4 bits (80), Expect = 0.080
 Identities = 49/217 (22%), Positives = 102/217 (47%), Gaps = 33/217 (15%)

Query: 141  SLSAGSLQLERKRRDFTSSGSRKLYFDTHALVCLLEDNGFATQQAEI--IVSALVKILEA 198
            +L   SL LER +RD + +  +K   +T  +        +  +Q+++   ++    + E 
Sbjct: 992  ALGRESLILERVQRDLSQTQCQKK--ETEQM--------YQIEQSKLKKYIAKQESVEER 1041

Query: 199  NMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKSEFSA---LRAENEKIKLELHQ 255
               +  ++M+ + Q +   ++  SQ    +K    ++    SA   L+AE+EK  L L +
Sbjct: 1042 LSQLQSENMLLRQQLDDAHKKANSQ----EKTSSTIQDQFHSAAKNLQAESEKQILSLQE 1097

Query: 256  LKQQVMDEV--IKVRTD--------TKLDFNLEKSRVKE--LYSLNEKKLLELRTEIVAL 303
              +++MDE   +K R D         K+D    +  V    L+   E ++L+L+  + ++
Sbjct: 1098 KNKELMDEYNHLKERMDQCEKEKAGRKIDLTEAQETVPSRCLHLDAENEVLQLQQTLFSM 1157

Query: 304  HA--QQDRALTQTDRKIETEVAGLKTMLESHKLDNIK 338
             A  +Q   L +  ++++ EV  LK+ +E + L+  K
Sbjct: 1158 KAIQKQCETLQKNKKQLKQEVVNLKSYMERNMLERGK 1194



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 183  QQAEIIVSALVKILEANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKSE---F 239
            +QA +    LV++ E N   +      K Q E+T + + S+I+ +K       K+E   +
Sbjct: 1223 KQAAVSHEQLVQLREDNTTSI------KTQMELTIKDLESEISRIKTSQADFNKTELERY 1276

Query: 240  SALRAENEKIKLELHQLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYS 287
              L  E  K++  L     +  + + +V   T+L    E++R + L++
Sbjct: 1277 KELYLEEVKVRESLSNELSRTNEMIAEV--STQLTVEKEQTRSRSLFT 1322


>gi|215490011 small inducible cytokine subfamily E, member 1 isoform
           b precursor [Homo sapiens]
          Length = 336

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 198 ANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKS--EFSALRAENEKIKLELHQ 255
           AN D V K +  K  +     + + Q  ++ K+  IL+ +  E   LR EN K+K E+ +
Sbjct: 26  ANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKAILQATLREEKKLRVENAKLKKEIEE 85

Query: 256 LKQQVMDEVIK 266
           LKQ+++   I+
Sbjct: 86  LKQELIQAEIQ 96


>gi|215490009 small inducible cytokine subfamily E, member 1 isoform
           a precursor [Homo sapiens]
          Length = 312

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 198 ANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKS--EFSALRAENEKIKLELHQ 255
           AN D V K +  K  +     + + Q  ++ K+  IL+ +  E   LR EN K+K E+ +
Sbjct: 2   ANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKAILQATLREEKKLRVENAKLKKEIEE 61

Query: 256 LKQQVMDEVIK 266
           LKQ+++   I+
Sbjct: 62  LKQELIQAEIQ 72


>gi|45006986 small inducible cytokine subfamily E, member 1 isoform
           a precursor [Homo sapiens]
          Length = 312

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 198 ANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKS--EFSALRAENEKIKLELHQ 255
           AN D V K +  K  +     + + Q  ++ K+  IL+ +  E   LR EN K+K E+ +
Sbjct: 2   ANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKAILQATLREEKKLRVENAKLKKEIEE 61

Query: 256 LKQQVMDEVIK 266
           LKQ+++   I+
Sbjct: 62  LKQELIQAEIQ 72


>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
           sapiens]
          Length = 261

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 27  LSGRPGGSETSARRCLSALSDGLGALRPRAPAARGGVSRASPLLLLLLVPSPRLAAAAPR 86
           L GRPG  +    R LSA   G    RPR         R  PL L+L++  P L    P 
Sbjct: 137 LHGRPG-RDARPWRLLSACPSG----RPRP--------RPLPLPLMLMLMLPTLQPLPPP 183

Query: 87  RQLGDWERSRLGYA-APPAGRSSAWRCSPGVAAAAGALPQYHGPAPA 132
                  R R G   A PA  + + R  PG ++ + A   +  P+PA
Sbjct: 184 GSARRPRRGRAGRGGAAPAPPTGSMRAGPGPSSPSAAPTSHPPPSPA 230


>gi|239749325 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 4   GSVGGQRTQRLPGRQRLLFLPVGLSGRPGGSETSARRCLSALSDGLGALRPRAPAARGGV 63
           G+VG  R Q  PG   +  LP  L  +P G+ +       A+  G     P      G  
Sbjct: 30  GTVG--RQQGGPGHGNVDHLP-NLGRQPRGAGSRGASAPRAVRTGAA---PEVVVQSGHR 83

Query: 64  SRASPLLLLLLVPSPRLAAAAPRRQLGDWERSRLGYAAPPAGRSSAWRCSPGVAAAAGAL 123
           S AS    L    +P     + RR+ G  E SR G AA P GR+  +  + G A+   A 
Sbjct: 84  SHASKRRFLEEGEAPA-RRLSERRRGGGKEESRPGTAAAPGGRAGLYPRAAGPASREPAR 142

Query: 124 PQYHGPAP 131
           P +   AP
Sbjct: 143 PTHRPRAP 150


>gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo
           sapiens]
          Length = 261

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 27  LSGRPGGSETSARRCLSALSDGLGALRPRAPAARGGVSRASPLLLLLLVPSPRLAAAAPR 86
           L GRPG  +    R LSA   G    RPR         R  PL L+L++  P L    P 
Sbjct: 137 LHGRPG-RDARPWRLLSACPSG----RPRP--------RPLPLPLMLMLMLPTLQPLPPP 183

Query: 87  RQLGDWERSRLGYA-APPAGRSSAWRCSPGVAAAAGALPQYHGPAPA 132
                  R R G   A PA  + + R  PG ++ + A   +  P+PA
Sbjct: 184 GSARRPRRGRAGRGGAAPAPPTGSMRAGPGPSSPSAAPTSHPPPSPA 230


>gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo
           sapiens]
          Length = 636

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 57  PAARGGVSRASPLLLLLLVPSPRL---AAAAPRRQLGDWERSRLGYAAPPAGRSSAWRCS 113
           P  R G +   P  L    PSPRL       PRR+ G     R G   P A  ++A   +
Sbjct: 284 PPTRPGAADICPSRLFA-PPSPRLFPRPGFLPRRRRGVLAHRRRGVLLPAAAAAAAAAAA 342

Query: 114 PGVAAAAGALPQYHGPAPALVSC 136
              AAAA  L Q   P  A   C
Sbjct: 343 AAAAAAAFCLTQLFAPPTAAAFC 365


>gi|239509122 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 4   GSVGGQRTQRLPGRQRLLFLPVGLSGRPGGSETSARRCLSALSDGLGALRPRAPAARGGV 63
           G+VG  R Q  PG   +  LP  L  +P G+ +       A+  G     P      G  
Sbjct: 30  GTVG--RQQGGPGHGNVDHLP-NLGRQPRGAGSRGASAPRAVRTGAA---PEVVVQSGHR 83

Query: 64  SRASPLLLLLLVPSPRLAAAAPRRQLGDWERSRLGYAAPPAGRSSAWRCSPGVAAAAGAL 123
           S AS    L    +P     + RR+ G  E SR G AA P GR+  +  + G A+   A 
Sbjct: 84  SHASKRRFLEEGEAPA-RRLSERRRGGGKEESRPGTAAAPGGRAGLYPRAAGPASREPAR 142

Query: 124 PQYHGPAP 131
           P +   AP
Sbjct: 143 PTHRPRAP 150


>gi|4506967 v-ski sarcoma viral oncogene homolog [Homo sapiens]
          Length = 728

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 211 MQQEITFQQV-----MSQIANVKKDMIILEKSEFSALRAENEKIKLELHQLKQQVMDEVI 265
           + QE+ F +V     + +    K+++    + E   LRAENEK   E ++ + ++  E+ 
Sbjct: 587 LHQELEFLRVAKKEKLREATEAKRNL----RKEIERLRAENEKKMKEANESRLRLKRELE 642

Query: 266 KVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQQDRALTQTDRKIETE 321
           + R     D   E  R++  YS   + L     ++   HA+ DR   + D   E E
Sbjct: 643 QARQARVCDKGCEAGRLRAKYSAQIEDL-----QVKLQHAEADREQLRADLLRERE 693


>gi|239747109 PREDICTED: hypothetical protein XP_002344496 [Homo
           sapiens]
          Length = 146

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 25/115 (21%), Positives = 62/115 (53%), Gaps = 4/115 (3%)

Query: 193 VKILEANMDIVYKDMVTKMQQEITFQQ-VMSQIANVKKDMIILEKSEFSALRAENEKIKL 251
           +K  +  MDI+ K +  K    +  ++ V S+  N+ KD  ++++   S  + + E  KL
Sbjct: 20  LKTDQLKMDILIKKLKQKFDDLMAEEEAVSSKCVNLSKDNQVIQQELLSMKKVQQECEKL 79

Query: 252 ELHQLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQ 306
           E +Q  + + +E++ ++T  + +  +E S+++E  S  +++ ++   ++  +H Q
Sbjct: 80  EENQ--KMLEEEILNLKTHME-NSMVELSKLQEYKSELDERAMQAVEKLKEIHLQ 131


>gi|126362971 serine/threonine kinase 10 [Homo sapiens]
          Length = 968

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 30/150 (20%), Positives = 69/150 (46%), Gaps = 14/150 (9%)

Query: 194 KILEANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKSEFSALRAENE------ 247
           K+ +  +    K +V  ++  IT  +++S+     ++M  L + E   LR   +      
Sbjct: 521 KLYKKTLKRTRKFVVDGVEVSITTSKIISEDEKKDEEMRFLRRQELRELRLLQKEEHRNQ 580

Query: 248 -----KIKLELHQLKQQVMDEVIKVRT--DTKLDFNLEKSRVKELYSLNEKKLLELRTEI 300
                K +L+L Q+ ++   E+   +   DT+L+ NLE+ + +++  + +   +  R E 
Sbjct: 581 TQLSNKHELQLEQMHKRFEQEINAKKKFFDTELE-NLERQQKQQVEKMEQDHAVRRREEA 639

Query: 301 VALHAQQDRALTQTDRKIETEVAGLKTMLE 330
             +  +QDR  T+   +++     +K  +E
Sbjct: 640 RRIRLEQDRDYTRFQEQLKLMKKEVKNEVE 669



 Score = 30.0 bits (66), Expect = 3.3
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 33/203 (16%)

Query: 147 LQLERKRRDFTSS-GSRKLYFDTHALVCLLEDNGFATQQAEIIVSALVKILEANMDIVYK 205
           LQLE+  + F     ++K +FDT       E      QQ +      V+ +E +  +  +
Sbjct: 589 LQLEQMHKRFEQEINAKKKFFDT-------ELENLERQQKQ-----QVEKMEQDHAVRRR 636

Query: 206 DMVTK--MQQEITFQQVMSQIANVKKDMIILEKSEFSAL----RAENEKIKLELHQLKQQ 259
           +   +  ++Q+  + +   Q+  +KK++    K+E   L    R E+ K K+E H  K+Q
Sbjct: 637 EEARRIRLEQDRDYTRFQEQLKLMKKEV----KNEVEKLPRQQRKESMKQKMEEHTQKKQ 692

Query: 260 VMDE--VIKVRTDTKLDF------NLEKSRVKELYSLNEKKLLELRTEIVALHAQQDRAL 311
           ++D   V K + D +L        N  +   KE   L +K+ L LR    AL   ++  L
Sbjct: 693 LLDRDFVAKQKEDLELAMKRLTTDNRREICDKERECLMKKQEL-LRDREAALWEMEEHQL 751

Query: 312 TQTDRKIETEVAGLKTMLESHKL 334
            +  + ++ ++   +  L+ H+L
Sbjct: 752 QERHQLVKQQLKD-QYFLQRHEL 773


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,942,355
Number of Sequences: 37866
Number of extensions: 617065
Number of successful extensions: 3158
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 252
Number of HSP's that attempted gapping in prelim test: 2964
Number of HSP's gapped (non-prelim): 448
length of query: 359
length of database: 18,247,518
effective HSP length: 103
effective length of query: 256
effective length of database: 14,347,320
effective search space: 3672913920
effective search space used: 3672913920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press