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Search of human proteins with 72534660
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|72534660 splicing factor, arginine/serine-rich 7 [Homo
sapiens]
(238 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 481 e-136
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens] 162 3e-40
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 131 6e-31
gi|148612890 serine-arginine repressor protein [Homo sapiens] 114 7e-26
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 113 1e-25
gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens] 112 4e-25
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens] 112 4e-25
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 110 8e-25
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 103 1e-22
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 103 1e-22
gi|169161980 PREDICTED: similar to FUS interacting protein (seri... 94 1e-19
gi|5730079 FUS interacting protein (serine-arginine rich) 1 isof... 91 7e-19
gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Ho... 89 3e-18
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 82 3e-16
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 82 4e-16
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 80 1e-15
gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo s... 78 6e-15
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 78 6e-15
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 77 2e-14
gi|119226260 calcium homeostasis endoplasmic reticulum protein [... 75 4e-14
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 75 7e-14
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 73 2e-13
gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens] 73 2e-13
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 71 7e-13
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 71 7e-13
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 71 9e-13
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 71 9e-13
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 69 4e-12
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 69 4e-12
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 69 4e-12
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 481 bits (1238), Expect = e-136
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA 60
MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
Sbjct: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA 60
Query: 61 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH 120
EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH
Sbjct: 61 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH 120
Query: 121 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR 180
RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR
Sbjct: 121 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR 180
Query: 181 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD 238
SGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD
Sbjct: 181 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD 238
>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
Length = 164
Score = 162 bits (409), Expect = 3e-40
Identities = 99/165 (60%), Positives = 107/165 (64%), Gaps = 14/165 (8%)
Query: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG 69
+ KVYVGNLG K ELERAF YYGPLR+VW+ARNPPGFAFVEFEDPRDA DAVR LDG
Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDG 68
Query: 70 KVICGSRVRVELSTGMPRRSRFDRPP---ARRPFDPNDRCYECGEKGHYAYDCHRYSRRR 126
+ +CG RVRVELS G +RSR PP RRP D R + R S RR
Sbjct: 69 RTLCGCRVRVELSNG-EKRSRNRGPPPSWGRRPRDDYRR---------RSPPPRRRSPRR 118
Query: 127 RSRSRSRSHSRSRGRRYSRSRSRSRGRR-SRSASPRRSRSISLRR 170
RS SRSRS S SR RR RS SR R + SRS S RSRS S R
Sbjct: 119 RSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNER 163
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 131 bits (329), Expect = 6e-31
Identities = 101/229 (44%), Positives = 126/229 (55%), Gaps = 32/229 (13%)
Query: 9 GETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDA 63
G T + V NL L R F YG + V+I R+ GFAFV F D RDAEDA
Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 64 VRGLDGKVICGSRVRVELSTGMPRRSRFDRPP----ARRPFDPNDRCYECGEKGHYAYDC 119
+ +DG V+ G +RV+++ R+ RPP +RR P R Y G G +
Sbjct: 72 MDAMDGAVLDGRELRVQMA-------RYGRPPDSHHSRR--GPPPRRYGGGGYGRRSRSP 122
Query: 120 HRYSRRRRSRSRSRSHSRSRGR-RYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRR 178
R RRRSRSRSRS SRSR R RYSRS+SRSR RSRS S +SRS +S+S+S+ R
Sbjct: 123 RR---RRRSRSRSRSRSRSRSRSRYSRSKSRSR-TRSRSRSTSKSRSARRSKSKSSSVSR 178
Query: 179 SRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGS 227
SRS +S SRSRSRS R S+S+SRS SP +S G+
Sbjct: 179 SRS---------RSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGA 218
>gi|148612890 serine-arginine repressor protein [Homo sapiens]
Length = 261
Score = 114 bits (285), Expect = 7e-26
Identities = 92/237 (38%), Positives = 124/237 (52%), Gaps = 31/237 (13%)
Query: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
MSRY R T +++ N+ +L R F YGP+ V+I R P GFA+V+FE
Sbjct: 1 MSRYTR-PPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFE 59
Query: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHY 115
D RDAEDA+ L+ K +CG ++ ++ + G + + R P P+D
Sbjct: 60 DVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSD----------- 108
Query: 116 AYDCHRYSRR-RRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSA 174
HR SR + R+RSRS S R RR S S SR RR S S +SRS SL R RS
Sbjct: 109 ----HRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRF-SYSQSKSRSKSLPR-RST 162
Query: 175 SLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRS 231
S R+SR+ R F SR RSRS+S+ + S KS+S SP++ S SG+ RS
Sbjct: 163 SARQSRT----PRRNF--GSRGRSRSKSLQKRSKSIGKSQSSSPQKQTS-SGTKSRS 212
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 113 bits (283), Expect = 1e-25
Identities = 103/281 (36%), Positives = 132/281 (46%), Gaps = 69/281 (24%)
Query: 12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 71
+VY+G L A + ++ER F YG + V + G+ FVEF+D RDA+DAV L+GK
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKN---GYGFVEFDDLRDADDAVYELNGKD 59
Query: 72 ICGSRVRVELSTGMP--------------RRSRFDR--PPARRPF--------------D 101
+CG RV VE + G RRS D+ PP R + D
Sbjct: 60 LCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQD 119
Query: 102 PNDRCYECGE----------KGHYAYDCHRYSRRRRSRSR---------------SRSHS 136
D + GE K + YS +R+ + + S
Sbjct: 120 LKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGS 179
Query: 137 RSRGRRYSRSRSRSRGR-RSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSR 195
R R R YSRSRS SR R RSR + RSRS S + S S S RSRSG S SR
Sbjct: 180 RRR-RSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSG---------SRSR 229
Query: 196 SRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
S+SRSRS SR RS + KSRSPS ++SRS S S +S S +
Sbjct: 230 SKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSK 270
Score = 80.1 bits (196), Expect = 2e-15
Identities = 57/116 (49%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Query: 123 SRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSA-SPRRSRSISLRRSRSASLRRSRS 181
SRRRRS SRSRSHSRSR R +SRSR S+S+ S RSRS S RSRS S RS+S
Sbjct: 179 SRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQS 238
Query: 182 GSIKGSRYFQSPSRSRSRSRSISRPRS-SRSKSRSPSPKRSRSPSGSPRRSASPER 236
S +SPS+ +SRSRS S +S S+SK ++ ++ G P +S SP R
Sbjct: 239 RSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKP-KSRSPSR 293
Score = 77.4 bits (189), Expect = 1e-14
Identities = 74/244 (30%), Positives = 102/244 (41%), Gaps = 20/244 (8%)
Query: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG 69
E ++ V NL + +L+ G + + +EF D + A+ LDG
Sbjct: 103 EYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDG 162
Query: 70 KVICGSRVR-VELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRS 128
+ G ++R VE G RR + R + R + R RS
Sbjct: 163 TEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRS 222
Query: 129 RSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASL----RRSRSGSI 184
RS SRS S+SR R SRSRS+ RS S RSRS S +SRS S + ++
Sbjct: 223 RSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDN 282
Query: 185 KGSRYFQSPSRSRSRSRSISRPRS---------------SRSKSRSPSPKRSRSPSGSPR 229
G +SPSR +S+S+S SR + S+ KS S RSRS GS
Sbjct: 283 VGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRS 342
Query: 230 RSAS 233
RS S
Sbjct: 343 RSRS 346
Score = 67.8 bits (164), Expect = 8e-12
Identities = 57/148 (38%), Positives = 73/148 (49%), Gaps = 35/148 (23%)
Query: 124 RRRRSRSRSRSHSRSRGRRYSRSRSRSRGR---RSRSASPRRSRSISLRRSRSASLRRSR 180
R+ RSRSRS+ SRSR R S+S+ + +GR R S S RSRS S R + S R S+
Sbjct: 328 RQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSK 387
Query: 181 SGSIKGSRYFQSP-SRSRSRSRSISRPR-----------------------SSRSKSRS- 215
+GS K + + S+SRS SRS+S+ R +RS+SRS
Sbjct: 388 AGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSN 447
Query: 216 -------PSPKRSRSPSGSPRRSASPER 236
PS RSRS S S RS S R
Sbjct: 448 SKSKPNLPSESRSRSKSASKTRSRSKSR 475
Score = 66.6 bits (161), Expect = 2e-11
Identities = 56/128 (43%), Positives = 70/128 (54%), Gaps = 13/128 (10%)
Query: 121 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR 180
R R +S+S+SRS S+ R + S SRGR S+ S R+SRS S + S S RSR
Sbjct: 289 RSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGR-SQEKSLRQSRSRSRSKGGSRSRSRSR 347
Query: 181 SGSI---KGSRYFQSPSRSRSRSRSIS---RPRSSRSKSRSPSPKRS------RSPSGSP 228
S S KG + + SRSRSRSRS S R R S+ S++ S K+ RS S SP
Sbjct: 348 SKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSP 407
Query: 229 RRSASPER 236
RS S ER
Sbjct: 408 SRSVSKER 415
Score = 65.5 bits (158), Expect = 4e-11
Identities = 58/146 (39%), Positives = 69/146 (47%), Gaps = 37/146 (25%)
Query: 127 RSRSRSRSHS------RSRGRRYSRSRSRSRGR--------------------------- 153
RSRSRSRS S R R R SRSRSRSR +
Sbjct: 341 RSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTD 400
Query: 154 RSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPR---SSR 210
RS+S SP RS S ++S S +R G + + Q +RSRSRS S S+P SR
Sbjct: 401 RSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQE-TRSRSRSNSKSKPNLPSESR 459
Query: 211 SKSRSPSPKRSRSPSGSPRRSASPER 236
S+S+S S RSRS S S S SP R
Sbjct: 460 SRSKSASKTRSRSKSRSRSASRSPSR 485
Score = 65.5 bits (158), Expect = 4e-11
Identities = 55/137 (40%), Positives = 67/137 (48%), Gaps = 29/137 (21%)
Query: 125 RRRSRSRSRSHSRSRGRRYSRS-RSRSRGR------------------RSRSASPRRSRS 165
+R+ R RSR SRSR R S+S RSR RG RS+S SP RS S
Sbjct: 353 KRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVS 412
Query: 166 ISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPR---------SSRSKSRSP 216
++S S +R G + + Q +RSRSRS S S+P S SK+RS
Sbjct: 413 KEREHAKSESSQREGRGESENAGTNQE-TRSRSRSNSKSKPNLPSESRSRSKSASKTRSR 471
Query: 217 SPKRSRSPSGSPRRSAS 233
S RSRS S SP RS S
Sbjct: 472 SKSRSRSASRSPSRSRS 488
Score = 52.0 bits (123), Expect = 5e-07
Identities = 50/142 (35%), Positives = 68/142 (47%), Gaps = 16/142 (11%)
Query: 87 RRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRR---RSRSRSRSHSRSRGRRY 143
+RSR + R ++R + G K + ++ RS+SRS S S S+ R +
Sbjct: 358 KRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREH 417
Query: 144 SRSRSRSRGRRSRSASP-------RRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRS 196
++S S R R S + RSRS S + S RSRS S +R SRS
Sbjct: 418 AKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTR-----SRS 472
Query: 197 RSRSRSISR-PRSSRSKSRSPS 217
+SRSRS SR P SRS+S S S
Sbjct: 473 KSRSRSASRSPSRSRSRSHSRS 494
>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 112 bits (279), Expect = 4e-25
Identities = 97/261 (37%), Positives = 124/261 (47%), Gaps = 44/261 (16%)
Query: 12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 71
+V++G L A + ++ER F YG +R + + R GF FVEFEDPRDA+DAV LDGK
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKE 61
Query: 72 ICGSRVRVE------------------LSTGMPRRSRFDRPPARRPF------------- 100
+C RV +E S+ PR R + PP R
Sbjct: 62 LCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSW 121
Query: 101 -DPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSR--S 157
D D + GE D HR + S+ + S GR+ +
Sbjct: 122 QDLKDFMRQAGEVTFA--DAHR-PKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
Query: 158 ASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPS 217
S R SRS S RSR+ S RSRS S SR +S SRSRSRSRS SR + SRS SRSP
Sbjct: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSR--KSYSRSRSRSRSRSRSK-SRSVSRSPV 235
Query: 218 PKRSRSPSGSPRRSASPERMD 238
P++S+ GS RS SP +D
Sbjct: 236 PEKSQK-RGSSSRSKSPASVD 255
Score = 65.9 bits (159), Expect = 3e-11
Identities = 66/196 (33%), Positives = 84/196 (42%), Gaps = 36/196 (18%)
Query: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG 69
E ++ V NL + +L+ G + R VEF D ++A+ L G
Sbjct: 107 ENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSG 166
Query: 70 KVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSR 129
K I G +++ L G R SR R R RS
Sbjct: 167 KEINGRKIK--LIEGSKRHSR---------------------------SRSRSRSRTRSS 197
Query: 130 SRSRSHSRSRGRR-YSRSRSRSRGR-RSRSASPRRSRSISLRRSRSASLRRSRSGSIKGS 187
SRSRS SRSR R+ YSRSRSRSR R RS+S S RS + R +S R S+
Sbjct: 198 SRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQ 257
Query: 188 RYFQSPSRSRSRSRSI 203
R SRSRSRSRS+
Sbjct: 258 R-----SRSRSRSRSV 268
>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 112 bits (279), Expect = 4e-25
Identities = 97/261 (37%), Positives = 124/261 (47%), Gaps = 44/261 (16%)
Query: 12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 71
+V++G L A + ++ER F YG +R + + R GF FVEFEDPRDA+DAV LDGK
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKE 61
Query: 72 ICGSRVRVE------------------LSTGMPRRSRFDRPPARRPF------------- 100
+C RV +E S+ PR R + PP R
Sbjct: 62 LCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSW 121
Query: 101 -DPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSR--S 157
D D + GE D HR + S+ + S GR+ +
Sbjct: 122 QDLKDFMRQAGEVTFA--DAHR-PKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
Query: 158 ASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPS 217
S R SRS S RSR+ S RSRS S SR +S SRSRSRSRS SR + SRS SRSP
Sbjct: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSR--KSYSRSRSRSRSRSRSK-SRSVSRSPV 235
Query: 218 PKRSRSPSGSPRRSASPERMD 238
P++S+ GS RS SP +D
Sbjct: 236 PEKSQK-RGSSSRSKSPASVD 255
Score = 65.9 bits (159), Expect = 3e-11
Identities = 66/196 (33%), Positives = 84/196 (42%), Gaps = 36/196 (18%)
Query: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG 69
E ++ V NL + +L+ G + R VEF D ++A+ L G
Sbjct: 107 ENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSG 166
Query: 70 KVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSR 129
K I G +++ L G R SR R R RS
Sbjct: 167 KEINGRKIK--LIEGSKRHSR---------------------------SRSRSRSRTRSS 197
Query: 130 SRSRSHSRSRGRR-YSRSRSRSRGR-RSRSASPRRSRSISLRRSRSASLRRSRSGSIKGS 187
SRSRS SRSR R+ YSRSRSRSR R RS+S S RS + R +S R S+
Sbjct: 198 SRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQ 257
Query: 188 RYFQSPSRSRSRSRSI 203
R SRSRSRSRS+
Sbjct: 258 R-----SRSRSRSRSV 268
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 110 bits (276), Expect = 8e-25
Identities = 99/273 (36%), Positives = 133/273 (48%), Gaps = 55/273 (20%)
Query: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
MSRY R T ++V N+ +L R F YGP+ V++ R P GFA+V+FE
Sbjct: 1 MSRYLR-PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
Query: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHY 115
D RDAEDA+ LD K ICG ++ ++ + G + + R + R +
Sbjct: 60 DVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSR--------YD 111
Query: 116 AYDCHRYSR-----RRRSRS-----------------------RSRSHS-----RSRGRR 142
YD +R SR RRRSRS RSRSHS + R R
Sbjct: 112 DYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRS 171
Query: 143 YSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSR-YFQSPSRSRSRSR 201
+SRS+S S RSRS S + + RSRSAS ++R S S+ +++S SR SR
Sbjct: 172 FSRSKSNS---RSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESR 228
Query: 202 SISRPRS---SRSKSRSPSPKRSRSPSGSPRRS 231
PRS SRS+SRS S RSRS + SP+ S
Sbjct: 229 KKEPPRSKSQSRSQSRSRSKSRSRSWT-SPKSS 260
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 103 bits (258), Expect = 1e-22
Identities = 96/246 (39%), Positives = 116/246 (47%), Gaps = 18/246 (7%)
Query: 9 GETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPP-----GFAFVEFEDPRDAEDA 63
G + V NL L R F YG + V+I R P GFAFV F D RDA+DA
Sbjct: 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDA 71
Query: 64 VRGLDGKVICGSRVRVELSTGMPR---RSRFDRPPAR-RPFDPNDRCYECGEKGHYAYDC 119
+DG + G +RV+++ R RSR P R R R G +
Sbjct: 72 EAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRR 131
Query: 120 HRYSRRRRSRSRSRSHSRSRGRRYSRSR-SRSRGRRSRSASPRRSRSISLRRSRSASLRR 178
HR R S SRSRS SR RG RYSRS SRS RSR + SRS R SR
Sbjct: 132 HRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRS-RYRESRYGGSHY 190
Query: 179 SRSG--SIKGSRYFQSPSRSRSRSRSISRPRS-----SRSKSRSPSPKRSRSPSGSPRRS 231
S SG + + SRY S S S+S S + SR S S +S+S S RSRS S S +
Sbjct: 191 SSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMT 250
Query: 232 ASPERM 237
SP R+
Sbjct: 251 RSPPRV 256
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 103 bits (257), Expect = 1e-22
Identities = 95/272 (34%), Positives = 120/272 (44%), Gaps = 61/272 (22%)
Query: 12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 71
+VY+G L + +++R FS YG L V + G+ FVEFED RDA+DAV L+GK
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKN---GYGFVEFEDSRDADDAVYELNGKE 59
Query: 72 ICGSRVRVELSTGMPRRSRFD-----------------------RPPARRPF-------- 100
+CG RV VE + G PRR R PP R +
Sbjct: 60 LCGERVIVEHARG-PRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 101 ------DPNDRCYECGEKGHYAYDCHR------------YSRRRRSRSR-SRSHSRSRGR 141
D D + GE + D H+ YS +R+ + + R
Sbjct: 119 SRCSWQDLKDFMRQAGEVTY--ADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
Query: 142 RYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSR 201
R + R+ RRS S S RSRS RSRS RSRS SI SR SRSRSRS+
Sbjct: 177 RLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSR-----SRSRSRSK 231
Query: 202 SISRPRSSRSKSRSPSPKRSRSPSGSPRRSAS 233
SR RS KSRS S + +S GS S S
Sbjct: 232 GRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRS 263
Score = 82.4 bits (202), Expect = 3e-16
Identities = 82/240 (34%), Positives = 108/240 (45%), Gaps = 24/240 (10%)
Query: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG 69
E ++ V NL + +L+ G + + +EF D + A+ LDG
Sbjct: 109 EYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDG 168
Query: 70 KVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSR 129
I G +R L PR S RR + + + R S R RSR
Sbjct: 169 TEINGRNIR--LIEDKPRTSH------RRSYSGSRSRSRSRRRSRSR---SRRSSRSRSR 217
Query: 130 SRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRR----------SRSIS---LRRSRSASL 176
S S+S SRSR R RSRSRS+GR+SRS S + SRS S +SRS S
Sbjct: 218 SISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSR 277
Query: 177 RRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
RS + KG +S SRS+SRS S S+++S SP PKR+ S S S RS S R
Sbjct: 278 SRSPKENGKGDIKSKSRSRSQSRSNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSR 337
Score = 45.1 bits (105), Expect = 6e-05
Identities = 36/83 (43%), Positives = 44/83 (53%), Gaps = 19/83 (22%)
Query: 120 HRYSRRR------RSRSRSRSHS---RSRGRRYSRSRSRSRGR----------RSRSASP 160
H +SR R +SRSRSRS S +G S+SRSRS+ R ++RS SP
Sbjct: 258 HSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSRSNSPLPVPPSKARSVSP 317
Query: 161 RRSRSISLRRSRSASLRRSRSGS 183
R+ S RSRS S RSRS S
Sbjct: 318 PPKRATSRSRSRSRSKSRSRSRS 340
Score = 30.4 bits (67), Expect = 1.4
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 126 RRSRSRSRSHSRSRGRRYSRSRSR 149
+R+ SRSRS SRS+ R SRS SR
Sbjct: 320 KRATSRSRSRSRSKSRSRSRSSSR 343
Score = 30.0 bits (66), Expect = 1.8
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Query: 124 RRRRSRSRSRSHSRSRGRRYSRSRSRSR 151
+R SRSRSRS S+SR SRSRS SR
Sbjct: 320 KRATSRSRSRSRSKSR----SRSRSSSR 343
Score = 29.3 bits (64), Expect = 3.1
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 131 RSRSHSRSRGRRYSRSRSRSRGR 153
R+ S SRSR R SRSRSRS R
Sbjct: 321 RATSRSRSRSRSKSRSRSRSSSR 343
Score = 28.9 bits (63), Expect = 4.1
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 20/53 (37%)
Query: 127 RSRSRSRSHSRS-------------------RGRRYSRSRSRSRGR-RSRSAS 159
+S+SRSRS SRS R SRSRSRS+ R RSRS+S
Sbjct: 290 KSKSRSRSQSRSNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSRSRSSS 342
>gi|169161980 PREDICTED: similar to FUS interacting protein
(serine-arginine rich) 1, partial [Homo sapiens]
Length = 181
Score = 93.6 bits (231), Expect = 1e-19
Identities = 66/173 (38%), Positives = 88/173 (50%), Gaps = 20/173 (11%)
Query: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
MSRY R T ++V N+ +L R F YGP+ V++ R P GFA+V+FE
Sbjct: 1 MSRYLR-PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
Query: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHY 115
D RDAEDA+ LD K ICG ++ ++ + G DR PN + G +
Sbjct: 60 DVRDAEDALHNLDRKWICGRQIEIQFAQG-------DRK------TPNQMKAKEGRNVYS 106
Query: 116 AYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSR-SASPRRSRSIS 167
+ Y R RRSRSRS RSR R + + RS R+R + PRRSRS S
Sbjct: 107 SSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHS 159
Score = 33.5 bits (75), Expect = 0.17
Identities = 25/51 (49%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 187 SRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRS----PSGSPRRSAS 233
SRY RSRSRS R R SRS+S + +RS S P+G PRRS S
Sbjct: 108 SRYDDYDRYRRSRSRSYER-RRSRSRSFDYNYRRSYSPRNRPTGRPRRSRS 157
>gi|5730079 FUS interacting protein (serine-arginine rich) 1 isoform
1 [Homo sapiens]
Length = 183
Score = 91.3 bits (225), Expect = 7e-19
Identities = 67/174 (38%), Positives = 87/174 (50%), Gaps = 21/174 (12%)
Query: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
MSRY R T ++V N+ +L R F YGP+ V++ R P GFA+V+FE
Sbjct: 1 MSRYLR-PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
Query: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHY 115
D RDAEDA+ LD K ICG ++ ++ + G DR PN + G +
Sbjct: 60 DVRDAEDALHNLDRKWICGRQIEIQFAQG-------DRK------TPNQMKAKEGRNVYS 106
Query: 116 AYDCHRYSRRRRSRSRS--RSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSIS 167
+ Y R RRSRSRS R SRSR Y+ RS S + PRRSRS S
Sbjct: 107 SSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHS 160
Score = 37.0 bits (84), Expect = 0.015
Identities = 28/53 (52%), Positives = 31/53 (58%), Gaps = 8/53 (15%)
Query: 187 SRYFQSPSRSRSRSRSISRPRSSRSKS------RSPSPKRSRSPSGSPRRSAS 233
SRY RSRSRS R R SRS+S RS SP+ SR P+G PRRS S
Sbjct: 108 SRYDDYDRYRRSRSRSYER-RRSRSRSFDYNYRRSYSPRNSR-PTGRPRRSRS 158
>gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Homo
sapiens]
Length = 248
Score = 89.4 bits (220), Expect = 3e-18
Identities = 87/250 (34%), Positives = 107/250 (42%), Gaps = 73/250 (29%)
Query: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIA--RNPPGFAFVEFEDPRDAEDAVRGL 67
+ ++YVGNL ++E F YG +R + + R P FAFVEFEDPRDAEDAV G
Sbjct: 15 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 74
Query: 68 DGKVICGSRVRVELST----------------------GMPRRSRFDR------PPARRP 99
DG G R+RVE G P R +R PP+
Sbjct: 75 DGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSW 134
Query: 100 FDPNDRCYECGEKGHYAYDCHR---------------YSRRRRSRSRSRSHSRS------ 138
D D E G+ + D +R Y+ R+ ++ RSH
Sbjct: 135 QDLKDHMREAGDVCY--ADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 192
Query: 139 -----RGRRYSRSRSRSRGR-RSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQS 192
R Y RSRSRSR R RSRS S RSRS S RRSR + RY S
Sbjct: 193 KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGS------------PRY--S 238
Query: 193 PSRSRSRSRS 202
P SRSRSR+
Sbjct: 239 PRHSRSRSRT 248
Score = 32.3 bits (72), Expect = 0.37
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 206 PRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
P RS+SRS S RSRS S S RS SP R
Sbjct: 200 PSYGRSRSRSRSRSRSRSRSNSRSRSYSPRR 230
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 82.4 bits (202), Expect = 3e-16
Identities = 72/262 (27%), Positives = 96/262 (36%), Gaps = 61/262 (23%)
Query: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGL 67
++V + + +L R F YGP++ + + + P G+AF+E+E RD A +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 68 DGKVICGSRVRVELSTG------MPRR-------------------------SRFDRPPA 96
DGK I G RV V++ G PRR SR+D P
Sbjct: 165 DGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPG 224
Query: 97 RRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSR 156
P DR + R R R RSR + R RR SRSR R R RSR
Sbjct: 225 PSPLPHRDRDRD---------------RERERRERSRERDKERERRRSRSRDRRRRSRSR 269
Query: 157 SASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSP 216
R RRSR S + R + SR + R R R + R P
Sbjct: 270 DKEER-------RRSRERSKDKDRDRKRRSSRSRERARRERERKEEL---RGGGGDMAEP 319
Query: 217 SPKRSRSPSGSPRRSASPERMD 238
S P P P+ D
Sbjct: 320 SEAGDAPPDDGPPGELGPDGPD 341
Score = 28.1 bits (61), Expect = 7.0
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 110 GEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSR------SRGRR 154
GE G D R R R R RSH R RR R R R RG R
Sbjct: 333 GELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGER 383
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 82.0 bits (201), Expect = 4e-16
Identities = 68/128 (53%), Positives = 74/128 (57%), Gaps = 15/128 (11%)
Query: 120 HRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSR---GRRSRSASPRRSRSISLRRSRSASL 176
+R R RSRSRS S SRSR RRYSRSRSR R G SR R SRS + RR
Sbjct: 409 YRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGH-RYSRSPA-RRGGYGPR 466
Query: 177 RRSRSGSIKGSRY--------FQSPSRSRSR-SRSISRPRS-SRSKSRSPSPKRSRSPSG 226
RRSRS S G RY S SRSRS S S SR RS +RS+S SPSP +SRS S
Sbjct: 467 RRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSR 526
Query: 227 SPRRSASP 234
S +S SP
Sbjct: 527 SRSQSPSP 534
Score = 53.1 bits (126), Expect = 2e-07
Identities = 45/94 (47%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 147 RSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRP 206
R+ S RRS S+S S S R S S S RS S S +G Y++S +RSRSRS SR
Sbjct: 369 RNASARRRSSSSSSSSSAS---RTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRS 425
Query: 207 RS-SRSKSRSPSPKRSRSPSGS---PRRSASPER 236
RS SR SRS S R S GS R S SP R
Sbjct: 426 RSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPAR 459
Score = 53.1 bits (126), Expect = 2e-07
Identities = 54/130 (41%), Positives = 58/130 (44%), Gaps = 49/130 (37%)
Query: 118 DCHRYSR----------RRRSRSRSRSHSR-SRGRRYSRSRSRSRGRRSRSASP------ 160
D HRYSR RRRSRSRS S R RG R R S SR R S S SP
Sbjct: 449 DGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSL 508
Query: 161 RRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKR 220
RSRS S SPS+SRSRSR SRS+S SPSP R
Sbjct: 509 TRSRSHS-----------------------PSPSQSRSRSR-------SRSQSPSPSPAR 538
Query: 221 SR--SPSGSP 228
+ P+ SP
Sbjct: 539 EKLTRPAASP 548
Score = 43.5 bits (101), Expect = 2e-04
Identities = 61/232 (26%), Positives = 80/232 (34%), Gaps = 70/232 (30%)
Query: 75 SRVRVELSTGMPRRSRFDRPPARRP-FDPNDRC---------YECGEKG--HYAYDCHRY 122
SR R G R+ R PARR + P R Y G +G H++ R
Sbjct: 437 SRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSSRSRS 496
Query: 123 S-----RRRRSRSRSRSHSRSRGRRYSRSRSRSR-------------------------- 151
S R RS +RSRSHS S + SRSRSRS+
Sbjct: 497 SWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPAASPAVGEKLKK 556
Query: 152 -----GRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKG-------------------- 186
G+ + +A P+ + L+ +L R K
Sbjct: 557 TEPAAGKETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEKMIQQEHERQEREDELR 616
Query: 187 --SRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
+R + R R R +SRSPSP+ SR S S RRS S R
Sbjct: 617 AMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSRSR 668
Score = 33.5 bits (75), Expect = 0.17
Identities = 22/59 (37%), Positives = 25/59 (42%)
Query: 121 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRS 179
R R + R R R + R R+SRS SPR SR S R RS S RS
Sbjct: 611 REDELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSRSRS 669
Score = 31.6 bits (70), Expect = 0.63
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 118 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLR 177
D R R+ + + + H+++ ++ GRRSR R R LR + +
Sbjct: 234 DFVRMLRKDKEEAEAIKHAKA----LEEEKAMYSGRRSRRQR-REFREKRLRGRKISPPS 288
Query: 178 RSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKR 220
+R S Y +SPS S S SRS +SRSP+P R
Sbjct: 289 YARRDSPTYDPYKRSPSESSSESRS---------RSRSPTPGR 322
Score = 29.3 bits (64), Expect = 3.1
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 125 RRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSI 184
++ ++ + R R R+ +R R + R R S R+SRS S
Sbjct: 594 KKAAQEKMIQQEHERQEREDELRAMARKIRMKERERREKEREEWERQYS---RQSRSPSP 650
Query: 185 KGSR-YFQSPSRSRSRSRS 202
+ SR Y S RSRSRSRS
Sbjct: 651 RYSREYSSSRRRSRSRSRS 669
Score = 28.5 bits (62), Expect = 5.3
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 141 RRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRS 200
R + + + + A S RRSR R R ++G R PS +R S
Sbjct: 237 RMLRKDKEEAEAIKHAKALEEEKAMYSGRRSRRQR-REFREKRLRG-RKISPPSYARRDS 294
Query: 201 RSISRPRSSRSKSRSPSPKRSRSPS 225
+ + S S+S S S RSRSP+
Sbjct: 295 PTYDPYKRSPSESSSESRSRSRSPT 319
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 80.5 bits (197), Expect = 1e-15
Identities = 61/121 (50%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 123 SRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISL---RRSRSASLRRS 179
SRRRR+ S SR H RSR R RS S+SR RR RS SPRR RS S RRSRS S R
Sbjct: 255 SRRRRTPSSSR-HRRSRSRSRRRSHSKSRSRR-RSKSPRRRRSHSRERGRRSRSTSKTRD 312
Query: 180 RSGSIKGSRYFQSPSRSRS---RSRSISRP-RSSRSKSRSPSPKRSRSPSGSPRRSASPE 235
+ K + ++P +S S RSRS SR R RS+S + SPK+ RSP RS SP
Sbjct: 313 KKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPR 372
Query: 236 R 236
R
Sbjct: 373 R 373
Score = 76.3 bits (186), Expect = 2e-14
Identities = 55/121 (45%), Positives = 66/121 (54%), Gaps = 12/121 (9%)
Query: 124 RRRRSRSRSRSHSRSRGRRYS------RSRSRSRGRRSRSASPRRSRSISLRRSRSASLR 177
RR RSRSR RSHS+SR RR S RS SR RGRRSRS S R + + +
Sbjct: 267 RRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKK---KEDKEKKRS 323
Query: 178 RSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERM 237
++ S +R +S SR R R RS S RS + K RSP K SRSP SPRR ++
Sbjct: 324 KTPPKSYSTARRSRSASRERRRRRSRSGTRSPK-KPRSPKRKLSRSP--SPRRHKKEKKK 380
Query: 238 D 238
D
Sbjct: 381 D 381
Score = 64.7 bits (156), Expect = 7e-11
Identities = 52/118 (44%), Positives = 65/118 (55%), Gaps = 22/118 (18%)
Query: 141 RRYSRSRSRSRGRRSRSASP-RRSRSISLRRS--RSASLRRSRSGSIKGSRYFQSPSRSR 197
RR+SRSRSRSR RR+ S+S RRSRS S RRS +S S RRS+S + S + RSR
Sbjct: 246 RRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSR 305
Query: 198 SRS-------------------RSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
S S +S S R SRS SR +RSRS + SP++ SP+R
Sbjct: 306 STSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKR 363
Score = 62.8 bits (151), Expect = 3e-10
Identities = 52/124 (41%), Positives = 65/124 (52%), Gaps = 35/124 (28%)
Query: 120 HRYSRRR---------RSRSRS------RSHSRSRGRRYSRSRSRSRGRRSRSASPRRSR 164
HR SR R RSR RS RSHSR RGRR SRS S++R ++ +RS+
Sbjct: 266 HRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRR-SRSTSKTRDKKKEDKEKKRSK 324
Query: 165 S-----ISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSK-SRSPSP 218
+ + RRSRSAS R R RSRS +RS +PRS + K SRSPSP
Sbjct: 325 TPPKSYSTARRSRSASRERRR-------------RRSRSGTRSPKKPRSPKRKLSRSPSP 371
Query: 219 KRSR 222
+R +
Sbjct: 372 RRHK 375
Score = 52.4 bits (124), Expect = 3e-07
Identities = 45/137 (32%), Positives = 60/137 (43%), Gaps = 35/137 (25%)
Query: 121 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSR---------------------GRRSRSAS 159
R RR +S R RSHSR RGRR SRS S++R RRSRSAS
Sbjct: 282 RSRRRSKSPRRRRSHSRERGRR-SRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSAS 340
Query: 160 PRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPK 219
R R RRSRSG+ + + +SP R SRS S R + + K +
Sbjct: 341 RERRR------------RRSRSGT-RSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERS 387
Query: 220 RSRSPSGSPRRSASPER 236
R + ++ S ++
Sbjct: 388 RDERERSTSKKKKSKDK 404
Score = 42.4 bits (98), Expect = 4e-04
Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Query: 75 SRVRVELSTGMPRRSR-FDRPPARRPFDPN---DRCYECGEKGHYAYDCHRYSRRRRSRS 130
S+ R + PRR R R RR + D+ E EK YS RRSRS
Sbjct: 279 SKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRS 338
Query: 131 RSRSHSRSRGRRYSRSRSRSRGRR---SRSASPRRSRSISLRRSRSASLRRSRSGSIKGS 187
SR R R R +RS + R + SRS SPRR + + + RSR
Sbjct: 339 ASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKK---EKKKDKDKERSRD-----E 390
Query: 188 RYFQSPSRSRSRSRSISRPRSSRS 211
R + + +S+ + R R S S
Sbjct: 391 RERSTSKKKKSKDKEKDRERKSES 414
Score = 40.4 bits (93), Expect = 0.001
Identities = 33/81 (40%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 159 SPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISR--PRSSR-SKSRS 215
S S+ I R + S +I+ + + SRSRSRS R P SSR +SRS
Sbjct: 212 SDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRS 271
Query: 216 PSPKRSRSPSGSPRRSASPER 236
S +RS S S S RRS SP R
Sbjct: 272 RSRRRSHSKSRSRRRSKSPRR 292
Score = 38.5 bits (88), Expect = 0.005
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 121 RYSRRRRSRSRSRSHSRSRG--RRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRR 178
R RRRRSRS +RS + R R+ SRS S R ++ + + RS R ++ ++
Sbjct: 341 RERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKK 400
Query: 179 SRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPR 229
S+ R +S + +R + ++ +GSP+
Sbjct: 401 SKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKKPIETGSPK 451
>gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo
sapiens]
Length = 375
Score = 78.2 bits (191), Expect = 6e-15
Identities = 54/117 (46%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 121 RYSRRRRSRSRSRSHSRSRGR-RYSRSRSRSRGR-RSRSASPRRSRSISLRRSRSASLRR 178
R+ R+ R SR RSHSRSR R R RSRSR R + RSRS ++SRS S R +S S R
Sbjct: 52 RHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSR 111
Query: 179 SRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKR-----SRSPSGSPRR 230
R I+ +S R R+RSRS +R RS K R P+R SR+PS P R
Sbjct: 112 ERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFR 168
Score = 71.6 bits (174), Expect = 6e-13
Identities = 57/136 (41%), Positives = 68/136 (50%), Gaps = 21/136 (15%)
Query: 84 GMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRY 143
G R R +R +R R E + H + R R RSR R +S SRSR R+
Sbjct: 49 GEDRHKRKERKSSRGRSHSRSRSRE---RRHRSRSRERKKSRSRSRERKKSRSRSRERKK 105
Query: 144 SRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSI 203
SRSRSR R RR RS RSRS S R R+ S R+R SRSR R + I
Sbjct: 106 SRSRSRERKRRIRS----RSRSRSRHRHRTRSRSRTR-------------SRSRDRKKRI 148
Query: 204 SRPRS-SRSKSRSPSP 218
+PR SRS SR+PSP
Sbjct: 149 EKPRRFSRSLSRTPSP 164
Score = 60.1 bits (144), Expect = 2e-09
Identities = 45/136 (33%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 101 DPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASP 160
D + + ++ E + + R S + + R+ SR RS SR R
Sbjct: 18 DKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHR 77
Query: 161 RRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKR 220
RSR RSRS ++SRS +S R +SRSRS R R RS+SRS S R
Sbjct: 78 SRSRERKKSRSRSRERKKSRS---------RSRERKKSRSRSRERKRRIRSRSRSRSRHR 128
Query: 221 SRSPSGSPRRSASPER 236
R+ S S RS S +R
Sbjct: 129 HRTRSRSRTRSRSRDR 144
Score = 46.2 bits (108), Expect = 2e-05
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 139 RGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRS 198
+GRR+ S+ +S + + S R L S +G + R + SR RS
Sbjct: 10 QGRRHESKDKSSKKHKSEEHNDKEHSSDKGRER----LNSSENGEDRHKRKERKSSRGRS 65
Query: 199 RSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
SRS SR R RS+SR RSRS RS S ER
Sbjct: 66 HSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRER 103
Score = 45.8 bits (107), Expect = 3e-05
Identities = 40/114 (35%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 126 RRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIK 185
RR S+ +S + + ++ S R R S R+ R +S RS S S
Sbjct: 12 RRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRS 71
Query: 186 GSRYFQSPSRSR--SRSRSISRPRSSRSKSRSPSPKRSRSPSGSPR-RSASPER 236
R +S SR R SRSRS R + SRS+SR RSRS R RS S R
Sbjct: 72 RERRHRSRSRERKKSRSRSRER-KKSRSRSRERKKSRSRSRERKRRIRSRSRSR 124
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 78.2 bits (191), Expect = 6e-15
Identities = 54/117 (46%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 121 RYSRRRRSRSRSRSHSRSRGR-RYSRSRSRSRGR-RSRSASPRRSRSISLRRSRSASLRR 178
R+ R+ R SR RSHSRSR R R RSRSR R + RSRS ++SRS S R +S S R
Sbjct: 111 RHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSR 170
Query: 179 SRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKR-----SRSPSGSPRR 230
R I+ +S R R+RSRS +R RS K R P+R SR+PS P R
Sbjct: 171 ERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFR 227
Score = 71.6 bits (174), Expect = 6e-13
Identities = 57/136 (41%), Positives = 68/136 (50%), Gaps = 21/136 (15%)
Query: 84 GMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRY 143
G R R +R +R R E + H + R R RSR R +S SRSR R+
Sbjct: 108 GEDRHKRKERKSSRGRSHSRSRSRE---RRHRSRSRERKKSRSRSRERKKSRSRSRERKK 164
Query: 144 SRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSI 203
SRSRSR R RR RS RSRS S R R+ S R+R SRSR R + I
Sbjct: 165 SRSRSRERKRRIRS----RSRSRSRHRHRTRSRSRTR-------------SRSRDRKKRI 207
Query: 204 SRPRS-SRSKSRSPSP 218
+PR SRS SR+PSP
Sbjct: 208 EKPRRFSRSLSRTPSP 223
Score = 62.8 bits (151), Expect = 3e-10
Identities = 51/126 (40%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 120 HRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSR-GRR--SRSASPRRSRSISLRRSRSAS- 175
H YSR R SRSR R R RSRSRS+ GRR S+ S ++ +S +S
Sbjct: 38 HHYSRSR-SRSRERKRKSDNEGRKHRSRSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSD 96
Query: 176 -----LRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRR 230
L S +G + R + SR RS SRS SR R RS+SR RSRS R
Sbjct: 97 KGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSR 156
Query: 231 SASPER 236
S S ER
Sbjct: 157 SRSRER 162
Score = 62.4 bits (150), Expect = 3e-10
Identities = 53/163 (32%), Positives = 70/163 (42%), Gaps = 11/163 (6%)
Query: 76 RVRVELSTGMPRRSRFDRPPARR--PFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSR 133
R R + G RSR RR D + + ++ E + + R S
Sbjct: 50 RKRKSDNEGRKHRSRSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGE 109
Query: 134 SHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSP 193
+ + R+ SR RS SR R RSR RSRS ++SRS +S
Sbjct: 110 DRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRS---------RSR 160
Query: 194 SRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
R +SRSRS R R RS+SRS S R R+ S S RS S +R
Sbjct: 161 ERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDR 203
Score = 35.0 bits (79), Expect = 0.057
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 181 SGSIKGSRYFQSPSRSRSRSR---SISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERM 237
S S + S++ S SRSRSR R S + R RS+SRS +R S S ++ S E
Sbjct: 30 SVSPRASKHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRHESKDKSSKKHKSEEHN 89
Query: 238 D 238
D
Sbjct: 90 D 90
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 76.6 bits (187), Expect = 2e-14
Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 7/121 (5%)
Query: 121 RYSRRRRSRSRSRSHSRSRGR---RYSRSRSRSRGRR-SRSASPRRSRSISLRRSRSASL 176
R RRRSRSR+ + RSR R R RSRSR+ RR SR+ SP R RS S +R +
Sbjct: 587 RTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGR 646
Query: 177 RRSRSGSIKGSRYFQSPSR-SRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPE 235
RSR+ + +G ++P+R RSRSR+ +R RS RS+SR+P+ +R RS S +PRR S
Sbjct: 647 SRSRTPARRGRSRSRTPARRGRSRSRTPAR-RSGRSRSRTPA-RRGRSRSRTPRRGRSRS 704
Query: 236 R 236
R
Sbjct: 705 R 705
Score = 72.8 bits (177), Expect = 2e-13
Identities = 57/114 (50%), Positives = 72/114 (63%), Gaps = 16/114 (14%)
Query: 124 RRRRSRS--RSRSHSRS---RGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRR 178
RR RSRS R RSHSRS RGR SRSR+ +R RSRS +P R RS RSR+ + RR
Sbjct: 550 RRGRSRSARRGRSHSRSPATRGR--SRSRTPARRGRSRSRTPARRRS----RSRTPTRRR 603
Query: 179 SRS--GSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRR 230
SRS + +G ++P+R RSR+RS P RS+SRSP+ + RS S +P R
Sbjct: 604 SRSRTPARRGRSRSRTPARRRSRTRS---PVRRRSRSRSPARRSGRSRSRTPAR 654
Score = 72.4 bits (176), Expect = 3e-13
Identities = 61/148 (41%), Positives = 79/148 (53%), Gaps = 37/148 (25%)
Query: 123 SRRRRSRSRS---RSHSRSRGRRYSRSRS-------RSRGRRSRSASP------------ 160
++R RSRSR+ R HSRSR ++ RSRS RS RR RS SP
Sbjct: 490 AKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQ 549
Query: 161 RRSRSISLRRSRSASLR-------RSRSGSIKGSRYFQSPSRSRSRSRSISRPRS----- 208
RR RS S RR RS S RSR+ + +G ++P+R RSRSR+ +R RS
Sbjct: 550 RRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTP 609
Query: 209 ---SRSKSRSPSPKRSRSPSGSPRRSAS 233
RS+SR+P+ +RSR+ S RRS S
Sbjct: 610 ARRGRSRSRTPARRRSRTRSPVRRRSRS 637
Score = 70.1 bits (170), Expect = 2e-12
Identities = 56/125 (44%), Positives = 73/125 (58%), Gaps = 13/125 (10%)
Query: 120 HRYSRRRRSRSRSRS---HSRSRGRRYSRSRSRSR---GRRSRSASP-RRSRSISLRRSR 172
H S R RSRSR+ RSR R +R RSRSR RRSRS +P RR RS RSR
Sbjct: 563 HSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRS----RSR 618
Query: 173 SASLRRSRSGS-IKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRS 231
+ + RRSR+ S ++ +SP+R RSRS + R RS+SR+P+ +R RS S +P R
Sbjct: 619 TPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPA-RRGRSRSRTPARR 677
Query: 232 ASPER 236
+ R
Sbjct: 678 SGRSR 682
Score = 69.3 bits (168), Expect = 3e-12
Identities = 64/129 (49%), Positives = 80/129 (62%), Gaps = 20/129 (15%)
Query: 121 RYSRRRRSRSRS-----RSHSRSRGRRYSRSRSRSRG-RRSRSASPRRSRSIS---LRRS 171
R +RR RS SRS RS SR+ RR RSRSR+ RRSRS +P R RS S RR
Sbjct: 555 RSARRGRSHSRSPATRGRSRSRTPARR-GRSRSRTPARRRSRSRTPTRRRSRSRTPARRG 613
Query: 172 RSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPK---RSRSPSGSP 228
RS RSR+ + + SR +SP R RSRSRS +R RS RS+SR+P+ + RSR+P+
Sbjct: 614 RS----RSRTPARRRSR-TRSPVRRRSRSRSPAR-RSGRSRSRTPARRGRSRSRTPARRG 667
Query: 229 R-RSASPER 236
R RS +P R
Sbjct: 668 RSRSRTPAR 676
Score = 68.6 bits (166), Expect = 5e-12
Identities = 57/127 (44%), Positives = 73/127 (57%), Gaps = 14/127 (11%)
Query: 121 RYSRRRRSRSRS-----RSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSAS 175
R RRRSRSR+ RS SR+ RR SR+RS R RRSRS SP R S RSR+ +
Sbjct: 597 RTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVR-RRSRSRSPARRSGRS--RSRTPA 653
Query: 176 LR---RSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPR--- 229
R RSR+ + +G ++P+R RSRS + R RS+SR+P RSRS S R
Sbjct: 654 RRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRS 713
Query: 230 RSASPER 236
S +P+R
Sbjct: 714 HSRTPQR 720
Score = 68.6 bits (166), Expect = 5e-12
Identities = 65/160 (40%), Positives = 83/160 (51%), Gaps = 15/160 (9%)
Query: 75 SRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRS 134
+R R + + RRSR R PARR R +G + RR RSRSR+
Sbjct: 621 ARRRSRTRSPVRRRSR-SRSPARR--SGRSRSRTPARRGR----SRSRTPARRGRSRSRT 673
Query: 135 HSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPS 194
+R GR SRSR+ +R RSRS +PRR RS RSRS +RR RS S R +S S
Sbjct: 674 PARRSGR--SRSRTPARRGRSRSRTPRRGRS----RSRSL-VRRGRSHSRTPQRRGRSGS 726
Query: 195 RSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASP 234
S +++S + R SRS S SP K+SR S R +SP
Sbjct: 727 SSERKNKSRTSQRRSRSNS-SPEMKKSRISSRRSRSLSSP 765
Score = 65.9 bits (159), Expect = 3e-11
Identities = 63/139 (45%), Positives = 78/139 (56%), Gaps = 24/139 (17%)
Query: 121 RYSRRRRSRSRS-----RSHSRS---RGRRYSRS----RSRSRGRRSRS-ASPRRSRS-I 166
R RR RSRSRS RSHSR+ RGR S S +SR+ RRSRS +SP +S I
Sbjct: 695 RTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRI 754
Query: 167 SLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRS-------KSRSPSPK 219
S RRSRS S RS++ S R S S + +S + PR SRS KSR+P P+
Sbjct: 755 SSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTP-PR 813
Query: 220 RSRSPSGSP--RRSASPER 236
RSRS S P ++S +P R
Sbjct: 814 RSRSSSSPPPKQKSKTPSR 832
Score = 62.8 bits (151), Expect = 3e-10
Identities = 67/149 (44%), Positives = 80/149 (53%), Gaps = 40/149 (26%)
Query: 125 RRRSRSR----SRSHSRSR----GRRYSRSRSRSRGRRSRSASP----RRSRS----ISL 168
RRRSRSR SR SRSR RR SRSR+ + RRSRS +P RRSRS ++
Sbjct: 1908 RRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTR 1967
Query: 169 RRSRS----ASLRRSRSGSI----KGSRYFQSP---SRSRSRSRSISRPRS--------- 208
RRSRS + RRSRS + + SR SP RSRSR+ ++R RS
Sbjct: 1968 RRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIR 2027
Query: 209 SRSKSRSPSPKRSRSPSGSP----RRSAS 233
RS+SR+P R RS S SP RRS S
Sbjct: 2028 RRSRSRTPLLPRKRSRSRSPLAIRRRSRS 2056
Score = 62.8 bits (151), Expect = 3e-10
Identities = 53/124 (42%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 125 RRRSRSRS----RSHSRSRGRRYSRSRSRSRG-----RRSRSASPRRSRSISLRRSRSAS 175
RRRSRSR+ R SRSR +R RSRSR RRSRS +P R S RS A
Sbjct: 1991 RRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAI 2050
Query: 176 LRRSRSGSIKGSRYFQSPSRSRS--RSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSAS 233
RRSRS + + +R +S +RS R RS S S RS+S +P R+ S S +P + +
Sbjct: 2051 RRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALN 2110
Query: 234 PERM 237
RM
Sbjct: 2111 SSRM 2114
Score = 62.0 bits (149), Expect = 4e-10
Identities = 67/163 (41%), Positives = 78/163 (47%), Gaps = 32/163 (19%)
Query: 93 RPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRS-RGRRYS-----RS 146
R P R P+ E EK R SRRRRS S R+ + S RGR S
Sbjct: 1719 RTPPRHRRSPSVSSPEPAEKS-------RSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQ 1771
Query: 147 RSRSRGRRSRSASPRR------SRSISLRRSRSAS----LRRSRSGSIKGSRYFQSPSRS 196
RSRSR RR ++ + RR S+S S RR RS S RR R GS SR SP+R
Sbjct: 1772 RSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSR---SPARQ 1828
Query: 197 RSRSRSISRPRSSRSKSRSPSPKRSRS-----PSGSPRRSASP 234
S SR+ SR R RS++ S KRSRS P R ASP
Sbjct: 1829 ES-SRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASP 1870
Score = 61.2 bits (147), Expect = 7e-10
Identities = 50/146 (34%), Positives = 65/146 (44%), Gaps = 35/146 (23%)
Query: 123 SRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSAS-------PRRSRSISLRRSRSA- 174
+R R +SHS + RR RSRS + +R RS S RSRS RRSRSA
Sbjct: 461 NRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQ 520
Query: 175 ---------------------------SLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPR 207
+ RR RS S + R +R RSRS + R
Sbjct: 521 RWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPAR 580
Query: 208 SSRSKSRSPSPKRSRSPSGSPRRSAS 233
RS+SR+P+ +RSRS + + RRS S
Sbjct: 581 RGRSRSRTPARRRSRSRTPTRRRSRS 606
Score = 61.2 bits (147), Expect = 7e-10
Identities = 59/139 (42%), Positives = 76/139 (54%), Gaps = 24/139 (17%)
Query: 121 RYSRRRRSRS---RSRSHSRSRGRRYSRSRSRSRGRRSRSASPR---RSRSISLRRSRS- 173
R S R RSR+ R RS SR+ R SRSRS R RS S +P+ RS S S R+++S
Sbjct: 676 RRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSR 735
Query: 174 ASLRRSRSGS---IKGSRYFQSPSRSRSRSRSISRPRSS------------RSKSRSPSP 218
S RRSRS S +K SR SRS S RS ++ R S + KS++P P
Sbjct: 736 TSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTP-P 794
Query: 219 KRSRSPSGSPR-RSASPER 236
+RSRS S P+ +S +P R
Sbjct: 795 RRSRSGSSQPKAKSRTPPR 813
Score = 60.5 bits (145), Expect = 1e-09
Identities = 63/130 (48%), Positives = 74/130 (56%), Gaps = 26/130 (20%)
Query: 125 RRRSRSRS---RSHSRSRGRRYSRSRSRSRG-----RRSRS-ASP---RRSRS----ISL 168
RRRSRSR+ R SRSR +R RSRSR RRSRS SP RRSRS ++
Sbjct: 1932 RRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTR 1991
Query: 169 RRSRS----ASLRRSRSGSI----KGSRYFQSPS-RSRSRSRSISRPRSSRSKSRSPSPK 219
RRSRS + RRSRS + + SR P+ R RSRSR+ PR RS+SRSP
Sbjct: 1992 RRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRK-RSRSRSPLAI 2050
Query: 220 RSRSPSGSPR 229
R RS S +PR
Sbjct: 2051 RRRSRSRTPR 2060
Score = 58.5 bits (140), Expect = 5e-09
Identities = 66/160 (41%), Positives = 79/160 (49%), Gaps = 46/160 (28%)
Query: 120 HRYSR-------RRRSRSR---------------SRSHSRSRGRRYSRSRSRSR-----G 152
HR SR RRRSRSR +R SRSR SR RSRSR
Sbjct: 1873 HRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTR 1932
Query: 153 RRSRSASP---RRSRS----ISLRRSRS----ASLRRSRSGSI----KGSRYFQSP---S 194
RRSRS +P RRSRS ++ RRSRS + RRSRS + + SR SP
Sbjct: 1933 RRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRR 1992
Query: 195 RSRSRSRSISRPRS-SRSKSRSPSPKRSRSPSGSPRRSAS 233
RSRSR+ ++R RS SR+ + RSR+P RRS S
Sbjct: 1993 RSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRS 2032
Score = 57.4 bits (137), Expect = 1e-08
Identities = 52/125 (41%), Positives = 65/125 (52%), Gaps = 21/125 (16%)
Query: 130 SRSRSHSRS-RGRRYSRSRSRSRGRRSRSASPRRSRSISL-------RRSRSASLRRSRS 181
S++RSH R+ R + +S + SR GR A+ +R RS S RSRS RRSRS
Sbjct: 459 SKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRS 518
Query: 182 GSIKGSRYFQSPSRSRSRSRSISRPRSSRSKS-----RSPSPKRSRSPSGSP-----RRS 231
G +SP R R RSRS RP SRS++ RS S +R RS S SP RS
Sbjct: 519 AQRWGRS--RSPQR-RGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRS 575
Query: 232 ASPER 236
+P R
Sbjct: 576 RTPAR 580
Score = 57.4 bits (137), Expect = 1e-08
Identities = 58/130 (44%), Positives = 66/130 (50%), Gaps = 25/130 (19%)
Query: 121 RYSRRRRSRSRSRS------HSRSRGRRYSRSRSRSR-----GRRSRSASPRRSRSISLR 169
R S R RSRSR+ SRSR +R RSRSR RRSRS +P R S
Sbjct: 1973 RTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRS-- 2030
Query: 170 RSRSASLRRSRSGSIKGSRYFQSP--SRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGS 227
RSR+ L R RS S +SP R RSRSR+ R RS +RSP R RS SGS
Sbjct: 2031 RSRTPLLPRKRSRS-------RSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGS 2083
Query: 228 P---RRSASP 234
RSA+P
Sbjct: 2084 SSDRSRSATP 2093
Score = 56.2 bits (134), Expect = 2e-08
Identities = 54/128 (42%), Positives = 68/128 (53%), Gaps = 19/128 (14%)
Query: 124 RRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRS---ISLRRSRS----ASL 176
+R RSR+ +H RSR R SR RSR R S S RRSRS ++ RRSRS S
Sbjct: 1862 KRSRSRASPATHRRSRSRTPLISRRRSRSRTS-PVSRRRSRSRTSVTRRRSRSRASPVSR 1920
Query: 177 RRSRSGSI----KGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSP----KRSRSPSGSP 228
RRSRS + + SR +R RSRSR+ P +R +SRS +P +RSRS +
Sbjct: 1921 RRSRSRTPPVTRRRSRSRTPTTRRRSRSRT---PPVTRRRSRSRTPPVTRRRSRSRTSPI 1977
Query: 229 RRSASPER 236
R S R
Sbjct: 1978 TRRRSRSR 1985
Score = 55.8 bits (133), Expect = 3e-08
Identities = 53/119 (44%), Positives = 61/119 (51%), Gaps = 19/119 (15%)
Query: 125 RRRSRSRS----RSHSRSRGRRYSRSRSRSRG-----RRSRSASPRRSRSI-SLRRSRSA 174
RRRSRSR+ R SRSR R RSRSR RRSRS +PR +R SL RS A
Sbjct: 2015 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPA 2074
Query: 175 SLRRSRSGSIKGSRYFQSPSRSRSRSRSISRP---RSSRSK-----SRSPSP-KRSRSP 224
RRS SGS +P +R+ S S + P SSR S SP+P R RSP
Sbjct: 2075 IRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSSRMSCFSRPSMSPTPLDRCRSP 2133
Score = 55.5 bits (132), Expect = 4e-08
Identities = 73/186 (39%), Positives = 89/186 (47%), Gaps = 41/186 (22%)
Query: 88 RSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRR------SRSRSRSHSRSRGR 141
RSR ++ R D + + + R +RRRR SRS +R S
Sbjct: 1776 RSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSS 1835
Query: 142 RYSR--------SRSRSRGR-------RSRS-ASP---RRSRS----ISLRRSRS----A 174
R R SR RSR R RSRS ASP RRSRS IS RRSRS
Sbjct: 1836 RRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPV 1895
Query: 175 SLRRSRSGSI---KGSRYFQSP-SRSRSRSRSISRPRSSRSKSRSPSPK---RSRSPSGS 227
S RRSRS + + SR SP SR RSRSR+ R RS+SR+P+ + RSR+P +
Sbjct: 1896 SRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTR-RRSRSRTPTTRRRSRSRTPPVT 1954
Query: 228 PRRSAS 233
RRS S
Sbjct: 1955 RRRSRS 1960
Score = 54.3 bits (129), Expect = 9e-08
Identities = 52/131 (39%), Positives = 66/131 (50%), Gaps = 15/131 (11%)
Query: 121 RYSRRRRSRSRSRS------HSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRS- 173
R S RSRSR+ SRSR SR RSRSR +R S R+ +S RRSRS
Sbjct: 1867 RASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSR 1926
Query: 174 ---ASLRRSRSGSIKGSRYFQS--PSRSRSRSRSISRP---RSSRSKSRSPSPKRSRSPS 225
+ RRSRS + R +S P +R RSRS + P R SRS++ + +RSRS +
Sbjct: 1927 TPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRT 1986
Query: 226 GSPRRSASPER 236
R S R
Sbjct: 1987 SPVTRRRSRSR 1997
Score = 53.9 bits (128), Expect = 1e-07
Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 33/126 (26%)
Query: 123 SRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRS---ISLRRSRSASL--- 176
SR + RSRS S + +SR RRSRS S RS++ +SLRRS S S
Sbjct: 734 SRTSQRRSRSNSSPEMK-------KSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCP 786
Query: 177 --------RRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSP 228
RRSRSGS S+ +++S + PR SRS S P ++S++PS
Sbjct: 787 KQKSQTPPRRSRSGS------------SQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQS 834
Query: 229 RRSASP 234
S+SP
Sbjct: 835 HSSSSP 840
Score = 52.4 bits (124), Expect = 3e-07
Identities = 56/154 (36%), Positives = 68/154 (44%), Gaps = 42/154 (27%)
Query: 121 RYSRRRRSRSRS---RSHSRSRGRRYSR-------SRSRSRGRRSRSASPR--------- 161
R SRR RS S S RS + R RR +SRS RR ++SPR
Sbjct: 1702 RLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGR 1761
Query: 162 ----------RSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSR------------ 199
RSRS S R + RR RSGS + + + SRSRSR
Sbjct: 1762 SPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYH 1821
Query: 200 SRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSAS 233
SRS +R SSR+ SR RSR+P S +RS S
Sbjct: 1822 SRSPARQESSRTSSRR-RRGRSRTPPTSRKRSRS 1854
Score = 52.0 bits (123), Expect = 5e-07
Identities = 62/176 (35%), Positives = 76/176 (43%), Gaps = 26/176 (14%)
Query: 76 RVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSH 135
R R S P + R RR + R +G R +R RSRSR R
Sbjct: 1723 RHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSR-REK 1781
Query: 136 SRSRGRR--------YSRSRSRSRG-----RRSRSASPRRSRSISLRRSRSASLRRSRSG 182
+R+ RR SR R RSR RR R S SRS + + S S RR R
Sbjct: 1782 TRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGR 1841
Query: 183 SIKGSRYFQSPSRSRSRSRSISRPRS-SRSKSR-SPSP---KRSRSPSGSPRRSAS 233
S ++P SR RSRS + P RS+SR SP+ RSR+P S RRS S
Sbjct: 1842 S-------RTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRS 1890
Score = 50.8 bits (120), Expect = 1e-06
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 124 RRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASP---RRSRSISLRRSRSAS----L 176
RR S S R +S ++ RS S S+ R+ RS +P R+S+ +RSRS +
Sbjct: 198 RRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKS 257
Query: 177 RRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSG---------- 226
RR+ + S SRSRSRS + ++ ++ RSPSP R G
Sbjct: 258 RRAHRSTSADSASSSDTSRSRSRS-AAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTT 316
Query: 227 SPRRSASPE 235
S +R +SPE
Sbjct: 317 STQRPSSPE 325
Score = 49.3 bits (116), Expect = 3e-06
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 131 RSRSHSRS-RGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRY 189
R S SRS ++ + + + RGRRS S+SPRR R +S+ ++ RS S R
Sbjct: 175 RESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERK------KSSKKKKHRSESESKKRK 228
Query: 190 FQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSAS 233
+SP+ +S+ +S + R RS+S +P+PK R+ + SAS
Sbjct: 229 HRSPT-PKSKRKSKDKKRK-RSRSTTPAPKSRRAHRSTSADSAS 270
Score = 47.4 bits (111), Expect = 1e-05
Identities = 69/228 (30%), Positives = 89/228 (39%), Gaps = 48/228 (21%)
Query: 55 EDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFD-----RPPARRPFDPNDRCYEC 109
+ PR A A G D + +PRRSR R P+ + E
Sbjct: 1606 DKPRAAPRAQSGSDSS----PEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEH 1661
Query: 110 GEKGHYAYDCHRYSRRRRSRSRS--RSHSRSRGRRYSRSRSRSRGRRSRSASP------- 160
K A R S +++SR+ R S +R SR RS S+SP
Sbjct: 1662 PPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTP 1721
Query: 161 ---RRSRSI----------SLRRSRSASLRRSRSGSIKGSRYFQSP---SRSRSRSR--- 201
RRS S+ S RR RSAS R+++ S +G P RSRSRSR
Sbjct: 1722 PRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREK 1781
Query: 202 ---SISRPRSSRSKSRSPSPKRSRSPS--------GSPRRSASPERMD 238
+ R RS S+S S +RSRS S GS S SP R +
Sbjct: 1782 TRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQE 1829
Score = 47.4 bits (111), Expect = 1e-05
Identities = 42/115 (36%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 124 RRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGS 183
R+RRS S S S S S S S S S S S+S S S S S + ++
Sbjct: 2603 RKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKP 2662
Query: 184 IKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPR--RSASPER 236
+ RSRS + I R SRS S SP +R SP SPR +S+S ER
Sbjct: 2663 ASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSER 2717
Score = 44.3 bits (103), Expect = 9e-05
Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 127 RSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKG 186
+S S S + + SR S S + +P R IS S S RS + +
Sbjct: 414 QSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREIS---SSPTSKNRSHGRAKRD 470
Query: 187 SRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSP--RRSASPER 236
+ +PSR RSRS + + RS+SR+P+ KR S S SP RRS S +R
Sbjct: 471 KSHSHTPSRRMGRSRSPATAKRGRSRSRTPT-KRGHSRSRSPQWRRSRSAQR 521
Score = 43.9 bits (102), Expect = 1e-04
Identities = 54/171 (31%), Positives = 70/171 (40%), Gaps = 42/171 (24%)
Query: 93 RPPARRPFDP--NDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRS 150
RP +R P P N++C +R RS S S ++ R RSRS
Sbjct: 1494 RPRSRSPSSPELNNKCLT--------------PQRERSGSESSVDQKTVARTPLGQRSRS 1539
Query: 151 RGRRSR----SASPRR-----SRSISLRRSRSASLRRSRSGSIK--GSRYFQSPSRSRSR 199
+ SASP+ S S ++R+ +RSRSGS S+ SP RSRS
Sbjct: 1540 GSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSG 1599
Query: 200 S------RSISRPRSSRSKSRSPSPK---------RSRSPSGSPRRSASPE 235
S + + PR+ SP PK RSRS S S R SPE
Sbjct: 1600 SSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPE 1650
Score = 42.4 bits (98), Expect = 4e-04
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 126 RRSRSRSRSHSRSRGRRYSRSR--SRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGS 183
RRSRS S + + + SR S S + +S +P R SI+ ++ S+ R
Sbjct: 813 RRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSC 872
Query: 184 IKGSRYFQSPSRSRSRS----------RSISRPRSSRSKSRSPSPK-------RSRSPSG 226
+ S + SR+ SR +S + PR S S+S SP PK R RS SG
Sbjct: 873 FESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSG 932
Query: 227 SPRRSASPERM 237
S S SP R+
Sbjct: 933 S--SSPSPSRV 941
Score = 40.8 bits (94), Expect = 0.001
Identities = 47/161 (29%), Positives = 64/161 (39%), Gaps = 48/161 (29%)
Query: 123 SRRRRSRSRSRSHSRSR---------GRRYSRSRSRSRGRRSRSAS----------PRRS 163
SRR RS S RS ++SR + +S++ RRSRS S PRRS
Sbjct: 756 SRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRS 815
Query: 164 RSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRS------------ 211
RS S + S SR S + + S + R SI+ P+++
Sbjct: 816 RSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFES 875
Query: 212 ------KSRSPSP-----------KRSRSPSGSPRRSASPE 235
KSR+PS K S P SP RS+SP+
Sbjct: 876 SPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQ 916
Score = 39.3 bits (90), Expect = 0.003
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 30/144 (20%)
Query: 123 SRRRRSRSRSRSHSRSRGRRYSRSRSRSRGR---RSRSASP-----RRSRSISLRRSRSA 174
S++++ RS S S R +S+ +S+ + RSRS +P R RS S + S+
Sbjct: 213 SKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSS 272
Query: 175 SLRRSRSGSIKGSRYF-----QSPSRSRSR------------SRSISRPRSSRSKSRSPS 217
RSRS S + +SPS + R + S RP S + ++ PS
Sbjct: 273 DTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPS 332
Query: 218 -----PKRSRSPSGSPRRSASPER 236
+ + + R S SPER
Sbjct: 333 SPYEDKDKDKKEKSATRPSPSPER 356
Score = 39.3 bits (90), Expect = 0.003
Identities = 53/156 (33%), Positives = 64/156 (41%), Gaps = 30/156 (19%)
Query: 76 RVRVELSTGMPRRSRFDRPPA-------RRPFDPNDRCYECGEKGHYAYDCHRYSRRRRS 128
R R S RRSR PPA R P P R + RRRS
Sbjct: 2005 RSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSP----------LAIRRRS 2054
Query: 129 RSRS-------RSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRS 181
RSR+ RS +RS RS S S RSRSA+P +R+ S R+ +L SR
Sbjct: 2055 RSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSSRM 2114
Query: 182 GSIKGSRYFQSPS-RSRSRSRSISRPRSSRSKSRSP 216
SR SP+ R RS + P S SR+P
Sbjct: 2115 SCF--SRPSMSPTPLDRCRSPGMLEPLGS---SRTP 2145
Score = 38.1 bits (87), Expect = 0.007
Identities = 46/151 (30%), Positives = 53/151 (35%), Gaps = 39/151 (25%)
Query: 125 RRRSRSRSRSHSRSRGRRYSRSRSRSRGRRS-----------------RSASPRRSRSIS 167
RR S S S S S S S S S S G S R SP + +
Sbjct: 2530 RRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEA 2589
Query: 168 LR-----------RSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSP 216
+R R R +S S S S S S S S S S S S SS S S SP
Sbjct: 2590 VREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSP 2649
Query: 217 SPKRS-----------RSPSGSPRRSASPER 236
SP + + P RRS SP +
Sbjct: 2650 SPAKPGPQALPKPASPKKPPPGERRSRSPRK 2680
Score = 37.4 bits (85), Expect = 0.012
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Query: 131 RSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYF 190
R RSHS S SR SR+ RRSRS SP + L R S SGS
Sbjct: 926 RQRSHSGSSSPSPSRVTSRTTPRRSRSVSPCSNVESRLLP------RYSHSGS------- 972
Query: 191 QSPSRSRSRSRSISRPRSSRSKSRSPSPK-RSRSPSG 226
S ++ + + PR S S S SP PK ++++P G
Sbjct: 973 ---SSPDTKVKPETPPRQSHSGSISPYPKVKAQTPPG 1006
Score = 36.6 bits (83), Expect = 0.020
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 19/106 (17%)
Query: 147 RSRSRGRRSRSASPRRSRSISL---RRSRSASLRRSRSGSIKGSRYF------------Q 191
R+ SR R S ++SP + RRSRS S R GS SR+ +
Sbjct: 1412 RTPSRERSSSASSPEMKDGLPRTPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPR 1471
Query: 192 SPSRSRSRSRSISRPR----SSRSKSRSPSPKRSRSPSGSPRRSAS 233
+PSR RS S P+ + R +SRSPS + +P+R S
Sbjct: 1472 TPSRGRSECDSSPEPKALPQTPRPRSRSPSSPELNNKCLTPQRERS 1517
Score = 35.8 bits (81), Expect = 0.033
Identities = 40/117 (34%), Positives = 48/117 (41%), Gaps = 22/117 (18%)
Query: 125 RRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSI 184
+ R+ SR S R S + R RS S P+ IS R+ RS SGS
Sbjct: 882 KSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQ-------RSHSGS- 933
Query: 185 KGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPS------PKRSRSPSGSPRRSASPE 235
SPS SR SR+ PR SRS S + P+ S S S SP PE
Sbjct: 934 ------SSPSPSRVTSRTT--PRRSRSVSPCSNVESRLLPRYSHSGSSSPDTKVKPE 982
Score = 31.2 bits (69), Expect = 0.82
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 133 RSHSRSRGRRYSRSRSRSRGRRSRSASP---RRSRS-ISLRRSRSASLRRSRSGSIKGSR 188
+SHS S + S+S++ +G RSRS+SP SRS I R ++ +SG
Sbjct: 1078 QSHSESPSLQ-SKSQTSPKGGRSRSSSPVTELASRSPIRQDRGEFSASPMLKSGMSPEQS 1136
Query: 189 YFQSPSRSRSR--SRSI---SRPRSSRSKSRSPSPKRSRSPSGSPRR 230
FQS S S S S+ SR ++ SK + P + + + PR+
Sbjct: 1137 RFQSDSSSYPTVDSNSLLGQSRLETAESKEKMALPPQEDATASPPRQ 1183
Score = 30.4 bits (67), Expect = 1.4
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 120 HRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRS 179
HR + + S S SRSR + GR AS RR
Sbjct: 261 HRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEG-------------D 307
Query: 180 RSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSAS 233
S G+ Q PS + ++ S P + K + K + PS SP RS++
Sbjct: 308 APFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDK--KEKSATRPSPSPERSST 359
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 192 SPSRSRSRSRSISR-PRSSRSKSRSPSP---KRSRSPSGSP 228
SP+R RS +S + P+SS S+S PSP K SR S SP
Sbjct: 398 SPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSP 438
Score = 30.0 bits (66), Expect = 1.8
Identities = 45/184 (24%), Positives = 67/184 (36%), Gaps = 12/184 (6%)
Query: 62 DAVRGLDGKVICGSRVRVELSTGMPR----RSRFDRPPARRPFDPNDRCYECGEKGHYAY 117
DAV + S E+ G+PR RSR P R +
Sbjct: 1408 DAVPRTPSRERSSSASSPEMKDGLPRTPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMK 1467
Query: 118 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGR---RSRSASPRRSRSISLRRSRSA 174
D R R RS S ++ + R RSRS ++ +P+R RS S S+
Sbjct: 1468 DIPRTPSRGRSECDSSPEPKALPQT-PRPRSRSPSSPELNNKCLTPQRERS----GSESS 1522
Query: 175 SLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASP 234
+++ + + G R S+ S S S S S S ++R+P RS S
Sbjct: 1523 VDQKTVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSS 1582
Query: 235 ERMD 238
+D
Sbjct: 1583 PEVD 1586
Score = 29.3 bits (64), Expect = 3.1
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 85 MPRRSRFDRPP-----ARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSR 139
+P+ + +PP +R P P D + + + R S + R + S S
Sbjct: 2659 LPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERG 2718
Query: 140 GRRYSR--SRSRSRGRRSRSASPRRSRSISLR 169
RR R SRS S RR + SPR R S R
Sbjct: 2719 SRRGQRGDSRSPSHKRRRETPSPRPMRHRSSR 2750
Score = 28.9 bits (63), Expect = 4.1
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 155 SRSASPRRSRSISLRRSRSASLRRS---RSGSIKGSRYF---------QSPSRSRSRSRS 202
S+S P+ SL +S SL +S + G YF QS + RS +
Sbjct: 1012 SKSPCPQEKSKDSLVQSCPGSLSLCAGVKSSTPPGESYFGVSSLQLKGQSQTSPDHRSDT 1071
Query: 203 IS-RPRSSRSKSRSPSPKRSRSPSGSPRRSASP 234
S R S S+S S K SP G RS+SP
Sbjct: 1072 SSPEVRQSHSESPSLQSKSQTSPKGGRSRSSSP 1104
>gi|119226260 calcium homeostasis endoplasmic reticulum protein
[Homo sapiens]
Length = 916
Score = 75.5 bits (184), Expect = 4e-14
Identities = 56/111 (50%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
Query: 124 RRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGS 183
+R SRSRS S+SRGR SRS SRS + S S S RSRS S SRS S RSRS S
Sbjct: 731 KRNSGPSRSRSRSKSRGRSSSRSNSRS-SKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRS 789
Query: 184 IKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASP 234
+ +S S+SRSRS+S S R RS+SRSP+P S +G SA P
Sbjct: 790 SRS----RSRSQSRSRSKSYSPGRRRRSRSRSPTPP---SSAGLGSNSAPP 833
Score = 68.6 bits (166), Expect = 5e-12
Identities = 50/109 (45%), Positives = 60/109 (55%), Gaps = 16/109 (14%)
Query: 122 YSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRS 181
+ + R+R R R+ G SRSRS+SRGR S ++ R S+S S S RSRS
Sbjct: 717 FRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSNSRSSKS-------SGSYSRSRS 769
Query: 182 GSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRR 230
+S SRS SRSRS SR RS S+SRS S RSRS S SP R
Sbjct: 770 ---------RSCSRSYSRSRSRSRSRSRSSRSRSRSQSRSRSKSYSPGR 809
Score = 50.4 bits (119), Expect = 1e-06
Identities = 46/106 (43%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 86 PRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSR 145
P RSR R +R G Y+ R R SRSRSRS SRSR R SR
Sbjct: 736 PSRSR-SRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSR-SR 793
Query: 146 SRSRSRGRRSRSASP---RRSRSISLRRSRSASLRRSRSGSIKGSR 188
SRS+SR RS+S SP RRSRS S SA L + + I SR
Sbjct: 794 SRSQSRS-RSKSYSPGRRRRSRSRSPTPPSSAGLGSNSAPPIPDSR 838
Score = 48.9 bits (115), Expect = 4e-06
Identities = 35/69 (50%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 119 CHRYSRRRRSRSRSRSHS-RSRGRRYSRSRSRS----RGRRSRSASPRRSRSISLRRSRS 173
C R R RSRSRSRS S RSR R SRSRS+S R RRSRS SP S L + +
Sbjct: 772 CSRSYSRSRSRSRSRSRSSRSRSRSQSRSRSKSYSPGRRRRSRSRSPTPPSSAGLGSNSA 831
Query: 174 ASLRRSRSG 182
+ SR G
Sbjct: 832 PPIPDSRLG 840
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 74.7 bits (182), Expect = 7e-14
Identities = 62/126 (49%), Positives = 70/126 (55%), Gaps = 12/126 (9%)
Query: 118 DCHRYSRRRRSRSRSRS-HSRSRGRRYS----RSRSRSRGRRSRSASPRRSRSISLRRSR 172
D ++ RRSRS+SRS HSRS R S RSRSRSR RS S+S RSRS S RSR
Sbjct: 192 DSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRS-RSSSSSQSRSRSSSRERSR 250
Query: 173 S-ASLRRSRSGSIKGS-----RYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSG 226
S S RS S S +GS R + S S S R+R SR RSS S R RSRSP
Sbjct: 251 SRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPER 310
Query: 227 SPRRSA 232
R S+
Sbjct: 311 RHRSSS 316
Score = 72.0 bits (175), Expect = 4e-13
Identities = 53/115 (46%), Positives = 66/115 (57%), Gaps = 13/115 (11%)
Query: 125 RRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSI 184
R RSRSRS S S+SR R SR RSRSRG +SRS+S R R +S R RS S
Sbjct: 226 RSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSS---------RSHRGSSSPRKRSYSS 276
Query: 185 KGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPR---RSASPER 236
S ++ RSRSRS S + R++SRSP +R RS SGS RS+S ++
Sbjct: 277 SSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPE-RRHRSSSGSSHSGSRSSSKKK 330
Score = 68.6 bits (166), Expect = 5e-12
Identities = 62/126 (49%), Positives = 67/126 (53%), Gaps = 20/126 (15%)
Query: 123 SRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSG 182
S +++S RSRS SRS S SRS SR S S S RSRS S RS S+S RSRS
Sbjct: 193 SNKKKSNRRSRSKSRS-----SHSRSSSR---SSSPSSSRSRSRSRSRSSSSSQSRSRSS 244
Query: 183 SIKGSRYFQSPSRSRSRS-RSISRPRSSRSKSRSPSP----KRSRSPSGSP-------RR 230
S + SR S SRS SRS R S PR S S SP KRSRS S S R
Sbjct: 245 SRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTR 304
Query: 231 SASPER 236
S SPER
Sbjct: 305 SRSPER 310
Score = 41.2 bits (95), Expect = 8e-04
Identities = 33/78 (42%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 123 SRRRRSRSRSRSH---SRSRGRRYS---------RSRSRSRGRRSRSASPRRSRSISLRR 170
SR +SRS SRSH S R R YS R RSRSR S RR+RS S R
Sbjct: 251 SRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPER 310
Query: 171 SRSASLRRSRSGSIKGSR 188
+S S SGS S+
Sbjct: 311 RHRSSSGSSHSGSRSSSK 328
Score = 35.8 bits (81), Expect = 0.033
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 75 SRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRS 134
SR R S+ RSR R R +G + YS S R+R
Sbjct: 227 SRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRK 286
Query: 135 HSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR 180
SRSR S S + RR+RS SP R S S S S S+
Sbjct: 287 RSRSR----SSSSGDRKKRRTRSRSPERRHRSSSGSSHSGSRSSSK 328
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 73.2 bits (178), Expect = 2e-13
Identities = 60/118 (50%), Positives = 67/118 (56%), Gaps = 12/118 (10%)
Query: 118 DCHRYSRRRRSRSRSRS-HSRSRGRRYS----RSRSRSRGRRSRSASPRRSRSISLRRSR 172
D ++ RRSRS+SRS HSRS R S RSRSRSR RS S+S RSRS S RSR
Sbjct: 192 DSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRS-RSSSSSQSRSRSSSRERSR 250
Query: 173 S-ASLRRSRSGSIKGS-----RYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSP 224
S S RS S S +GS R + S S S R+R SR RSS S R RSRSP
Sbjct: 251 SRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSP 308
Score = 68.2 bits (165), Expect = 6e-12
Identities = 57/115 (49%), Positives = 66/115 (57%), Gaps = 10/115 (8%)
Query: 123 SRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSG 182
S +++S RSRS SRS S SRS SR S S S RSRS S RS S+S RSRS
Sbjct: 193 SNKKKSNRRSRSKSRS-----SHSRSSSR---SSSPSSSRSRSRSRSRSSSSSQSRSRSS 244
Query: 183 SIKGSRYFQSPSRSRSRS-RSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
S + SR S SRS SRS R S PR S S SP+R+R S S R S+S +R
Sbjct: 245 SRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRS-RSSSSGDR 298
Score = 30.4 bits (67), Expect = 1.4
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 75 SRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRS 134
SR R S+ RSR R R +G + YS S R+R
Sbjct: 227 SRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRK 286
Query: 135 HSRSRGRRYSRSRSRSRGRRSRSASP 160
SRSR S S + RR+RS SP
Sbjct: 287 RSRSR----SSSSGDRKKRRTRSRSP 308
>gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens]
Length = 221
Score = 72.8 bits (177), Expect = 2e-13
Identities = 66/194 (34%), Positives = 85/194 (43%), Gaps = 48/194 (24%)
Query: 9 GETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPG---FAFVEFEDPRDAEDAVR 65
G+ ++YVGNL T + +LE F YG +R + + +N G FAFV FEDPRDAEDA+
Sbjct: 12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIEL-KNRHGLVPFAFVRFEDPRDAEDAIY 70
Query: 66 GLDGKVICGSRVRVELST------GMPRRSRFDRPPARRPF------------------- 100
G +G R+RVE G PR R P R F
Sbjct: 71 GRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 101 --DPNDRCYECGEK---GHYAY---DCHRYSRRRRSRSRSRSH-----------SRSRGR 141
+ D CY +K G Y + Y+ R+ ++ RSH RS
Sbjct: 131 MREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSTSY 190
Query: 142 RYSRSRSRSRGRRS 155
YSRSRS SRGR S
Sbjct: 191 GYSRSRSGSRGRDS 204
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 71.2 bits (173), Expect = 7e-13
Identities = 72/235 (30%), Positives = 101/235 (42%), Gaps = 24/235 (10%)
Query: 13 VYVGNLGTGAGKGE-LERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLD 68
VYVGNL + + L F G ++ V +A + P FAFVEF D A+ +
Sbjct: 184 VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL-AFN 242
Query: 69 GKVICGSRVRVELSTGMPRRSRFDRPPARRPF-------DPNDRCYECGEKGHYAYDCHR 121
G + +++ S + +PP P + R E A +
Sbjct: 243 GVMFGDRPLKINHSN-----NAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPES 297
Query: 122 YSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRS 181
R RSRSH+RS+ SRS S+S RR RS S RSRS + RSR RRS+S
Sbjct: 298 GKSNERKGGRSRSHTRSK----SRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKS 353
Query: 182 GSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
K S+ S R +SRSRS SR + ++ + +R + R ER
Sbjct: 354 PHKKRSK---SRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKER 405
Score = 52.4 bits (124), Expect = 3e-07
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Query: 89 SRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRS 148
SR R R +R E + + R + R +++ R R + R + +
Sbjct: 373 SRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKD 432
Query: 149 RSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRS 208
R R R + R + + + + RS I R + +SR+ RS + R
Sbjct: 433 RER-EREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKR--KKDKKSRTPPRSYNASRR 489
Query: 209 SRSKSRSPSPKRSRSPSGSPRRSASPER 236
SRS SR +RSRS S SPR S + +R
Sbjct: 490 SRSSSRERRRRRSRSSSRSPRTSKTIKR 517
Score = 49.3 bits (116), Expect = 3e-06
Identities = 33/110 (30%), Positives = 50/110 (45%)
Query: 126 RRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIK 185
++SR+ RS++ SR R S R R RS S SPR S++I + SRS S R K
Sbjct: 475 KKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKK 534
Query: 186 GSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPE 235
+ S R R RS S +SS + +++ + + P+
Sbjct: 535 REKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPD 584
Score = 45.8 bits (107), Expect = 3e-05
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 118 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLR 177
D + + R R R + H + R + + + + + R RS+ I +R +
Sbjct: 424 DREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREK-----DRSKEIDEKRKKDKK-S 477
Query: 178 RSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
R+ S SR +S SR R R RS S RS R+ S++ K SRSPS R +R
Sbjct: 478 RTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRT-SKTIKRKSSRSPSPRSRNKKDKKR 535
Score = 44.7 bits (104), Expect = 7e-05
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 20/132 (15%)
Query: 118 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRS------RGRRSRSASPRRSRSISLRRS 171
D R + + R + + + + R + RS R + +S +P RS + S RRS
Sbjct: 432 DREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNAS-RRS 490
Query: 172 RSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSP----------SPKRS 221
RS+S R R S SR SP S++ R SR S RS+++ S +R
Sbjct: 491 RSSSRERRRRRSRSSSR---SPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRE 547
Query: 222 RSPSGSPRRSAS 233
R S S R+S++
Sbjct: 548 RERSTSMRKSSN 559
Score = 41.2 bits (95), Expect = 8e-04
Identities = 44/129 (34%), Positives = 52/129 (40%), Gaps = 21/129 (16%)
Query: 104 DRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRS-------RGRRSR 156
DR E EK R + RSRS SR R RR SRS SRS + + SR
Sbjct: 462 DRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSR 521
Query: 157 SASPR-RSRSISLR------------RSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSI 203
S SPR R++ R R RS S+R+S S G + S S
Sbjct: 522 SPSPRSRNKKDKKREKERDHISERRERERSTSMRKS-SNDRDGKEKLEKNSTSLKEKEHN 580
Query: 204 SRPRSSRSK 212
P SS SK
Sbjct: 581 KEPDSSVSK 589
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 71.2 bits (173), Expect = 7e-13
Identities = 72/235 (30%), Positives = 101/235 (42%), Gaps = 24/235 (10%)
Query: 13 VYVGNLGTGAGKGE-LERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLD 68
VYVGNL + + L F G ++ V +A + P FAFVEF D A+ +
Sbjct: 68 VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL-AFN 126
Query: 69 GKVICGSRVRVELSTGMPRRSRFDRPPARRPF-------DPNDRCYECGEKGHYAYDCHR 121
G + +++ S + +PP P + R E A +
Sbjct: 127 GVMFGDRPLKINHSN-----NAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPES 181
Query: 122 YSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRS 181
R RSRSH+RS+ SRS S+S RR RS S RSRS + RSR RRS+S
Sbjct: 182 GKSNERKGGRSRSHTRSK----SRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKS 237
Query: 182 GSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
K S+ S R +SRSRS SR + ++ + +R + R ER
Sbjct: 238 PHKKRSK---SRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKER 289
Score = 52.4 bits (124), Expect = 3e-07
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Query: 89 SRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRS 148
SR R R +R E + + R + R +++ R R + R + +
Sbjct: 257 SRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKD 316
Query: 149 RSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRS 208
R R R + R + + + + RS I R + +SR+ RS + R
Sbjct: 317 RER-EREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKR--KKDKKSRTPPRSYNASRR 373
Query: 209 SRSKSRSPSPKRSRSPSGSPRRSASPER 236
SRS SR +RSRS S SPR S + +R
Sbjct: 374 SRSSSRERRRRRSRSSSRSPRTSKTIKR 401
Score = 49.3 bits (116), Expect = 3e-06
Identities = 33/110 (30%), Positives = 50/110 (45%)
Query: 126 RRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIK 185
++SR+ RS++ SR R S R R RS S SPR S++I + SRS S R K
Sbjct: 359 KKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKK 418
Query: 186 GSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPE 235
+ S R R RS S +SS + +++ + + P+
Sbjct: 419 REKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPD 468
Score = 45.8 bits (107), Expect = 3e-05
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 118 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLR 177
D + + R R R + H + R + + + + + R RS+ I +R +
Sbjct: 308 DREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREK-----DRSKEIDEKRKKDKK-S 361
Query: 178 RSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
R+ S SR +S SR R R RS S RS R+ S++ K SRSPS R +R
Sbjct: 362 RTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRT-SKTIKRKSSRSPSPRSRNKKDKKR 419
Score = 44.7 bits (104), Expect = 7e-05
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 20/132 (15%)
Query: 118 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRS------RGRRSRSASPRRSRSISLRRS 171
D R + + R + + + + R + RS R + +S +P RS + S RRS
Sbjct: 316 DREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNAS-RRS 374
Query: 172 RSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSP----------SPKRS 221
RS+S R R S SR SP S++ R SR S RS+++ S +R
Sbjct: 375 RSSSRERRRRRSRSSSR---SPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRE 431
Query: 222 RSPSGSPRRSAS 233
R S S R+S++
Sbjct: 432 RERSTSMRKSSN 443
Score = 41.2 bits (95), Expect = 8e-04
Identities = 44/129 (34%), Positives = 52/129 (40%), Gaps = 21/129 (16%)
Query: 104 DRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRS-------RGRRSR 156
DR E EK R + RSRS SR R RR SRS SRS + + SR
Sbjct: 346 DRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSR 405
Query: 157 SASPR-RSRSISLR------------RSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSI 203
S SPR R++ R R RS S+R+S S G + S S
Sbjct: 406 SPSPRSRNKKDKKREKERDHISERRERERSTSMRKS-SNDRDGKEKLEKNSTSLKEKEHN 464
Query: 204 SRPRSSRSK 212
P SS SK
Sbjct: 465 KEPDSSVSK 473
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 70.9 bits (172), Expect = 9e-13
Identities = 67/147 (45%), Positives = 81/147 (55%), Gaps = 36/147 (24%)
Query: 120 HRYSRRRRSRSR-----SRSHSRSRGRR-------------YSRSRSRSRGR-------- 153
HR R RSRSR SRS S+SRGRR S+SR R R R
Sbjct: 1857 HRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRK 1916
Query: 154 --RSRSASP-RRSRS-ISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSS 209
R+RS +P RRSRS RR RS S+ R RS SI SR ++PSR RSR+ S R R+
Sbjct: 1917 TVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSR-RSRTPS-RRSRTP 1974
Query: 210 RSKSRSPSPKRSRSPSGSPRRSASPER 236
+SR+PS +RSR+PS RRS +P R
Sbjct: 1975 SRRSRTPS-RRSRTPS---RRSRTPSR 1997
Score = 65.5 bits (158), Expect = 4e-11
Identities = 58/138 (42%), Positives = 73/138 (52%), Gaps = 28/138 (20%)
Query: 123 SRRRRSRSRSRSHSRSRGRRYSRS--RSRSRGRRSRSASPRRSRSISLR----------- 169
SR+R S SRSR+ RS + RS RSRSR RR R +S RS+S R
Sbjct: 1836 SRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSP 1895
Query: 170 --RSRSASLRRSRSGSIKGSRYFQSPSRS---RSRSRSISRPRSSRSKSR------SPSP 218
RS+S +R RS S + ++ SR+ RSRS + SR R SRS R SPS
Sbjct: 1896 KHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPS- 1954
Query: 219 KRSRSPSGSPRRSASPER 236
+RSR+PS RRS +P R
Sbjct: 1955 RRSRTPS---RRSRTPSR 1969
Score = 61.6 bits (148), Expect = 6e-10
Identities = 60/119 (50%), Positives = 68/119 (57%), Gaps = 17/119 (14%)
Query: 120 HRYSRRRRSRS----RSRSHSRSRGRRYSRSRSRSRGRRSRSAS------PRRSRSISLR 169
H SRRRRSRS RS S S SR R RSR+ RRSR+ S RRSR+ S R
Sbjct: 1932 HTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPS-R 1990
Query: 170 RSRSASLRRSRSGSIKGSRYFQ-SPSRSRSRSRSISRPRSSRS---KSRSPSPKRSRSP 224
RSR+ S RR RS S+ R F SP R R RSR+ R R SRS + RS S +R RSP
Sbjct: 1991 RSRTPS-RRRRSRSVVRRRSFSISPVRLR-RSRTPLRRRFSRSPIRRKRSRSSERGRSP 2047
Score = 61.2 bits (147), Expect = 7e-10
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 124 RRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRS-ASPRRSRSISLRRSRSASLRRSRSG 182
R R RS+S H + SRSR+R R +S+S S RSRS S RR RS+ R G
Sbjct: 1823 RSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRG 1882
Query: 183 -------SIKGSRYFQSPSRSRSRSRSISRP--RSSRSKSRSPSPKRSRSPSGSPRR 230
K S +S SR R R RS SR ++ R++SR+PS +RSRS + S RR
Sbjct: 1883 RRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPS-RRSRSHTPSRRR 1938
Score = 60.8 bits (146), Expect = 1e-09
Identities = 59/135 (43%), Positives = 71/135 (52%), Gaps = 13/135 (9%)
Query: 87 RRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRS 146
RRSR P RR R G + ++ SRR R+ SR RS + SR R
Sbjct: 1927 RRSRSHTPSRRR------RSRSVGRRRSFSISP---SRRSRTPSR-RSRTPSRRSRTPSR 1976
Query: 147 RSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSR-SRSISR 205
RSR+ RRSR+ S RRSR+ S RR RS S+ R RS SI R +S + R R SRS R
Sbjct: 1977 RSRTPSRRSRTPS-RRSRTPS-RRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIR 2034
Query: 206 PRSSRSKSRSPSPKR 220
+ SRS R SPKR
Sbjct: 2035 RKRSRSSERGRSPKR 2049
Score = 58.9 bits (141), Expect = 4e-09
Identities = 45/130 (34%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 118 DCHRYSRRRRSRSRSR------SHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRS 171
D H S++ ++R + S RSR +R S +SR R S S S R RS +
Sbjct: 1798 DTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSH 1857
Query: 172 RSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPR-- 229
RS + RSRS + S +S SR R R RS + +S+S KR RS S R
Sbjct: 1858 RSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKT 1917
Query: 230 ---RSASPER 236
RS +P R
Sbjct: 1918 VRARSRTPSR 1927
Score = 58.2 bits (139), Expect = 6e-09
Identities = 65/139 (46%), Positives = 79/139 (56%), Gaps = 31/139 (22%)
Query: 120 HRYSRRRRSRS---RSRSHSRSRGRRYSRSRSRSRG-RRSRSASPRRSRSISLRRSRSAS 175
+R + R RSR+ RSRSH+ SR R RSRS G RRS S SP R RRSR+ S
Sbjct: 1914 NRKTVRARSRTPSRRSRSHTPSR-----RRRSRSVGRRRSFSISPSRRSRTPSRRSRTPS 1968
Query: 176 LRRSRSGSIKG---SRYFQSPSRSRSRSRSISRPRSSRS----KSRSPSP---KRSRSP- 224
RRSR+ S + SR ++PSR RSR+ SR R SRS +S S SP +RSR+P
Sbjct: 1969 -RRSRTPSRRSRTPSRRSRTPSR---RSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPL 2024
Query: 225 ----SGSP---RRSASPER 236
S SP +RS S ER
Sbjct: 2025 RRRFSRSPIRRKRSRSSER 2043
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 70.9 bits (172), Expect = 9e-13
Identities = 67/147 (45%), Positives = 81/147 (55%), Gaps = 36/147 (24%)
Query: 120 HRYSRRRRSRSR-----SRSHSRSRGRR-------------YSRSRSRSRGR-------- 153
HR R RSRSR SRS S+SRGRR S+SR R R R
Sbjct: 1857 HRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRK 1916
Query: 154 --RSRSASP-RRSRS-ISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSS 209
R+RS +P RRSRS RR RS S+ R RS SI SR ++PSR RSR+ S R R+
Sbjct: 1917 TVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSR-RSRTPS-RRSRTP 1974
Query: 210 RSKSRSPSPKRSRSPSGSPRRSASPER 236
+SR+PS +RSR+PS RRS +P R
Sbjct: 1975 SRRSRTPS-RRSRTPS---RRSRTPSR 1997
Score = 65.5 bits (158), Expect = 4e-11
Identities = 58/138 (42%), Positives = 73/138 (52%), Gaps = 28/138 (20%)
Query: 123 SRRRRSRSRSRSHSRSRGRRYSRS--RSRSRGRRSRSASPRRSRSISLR----------- 169
SR+R S SRSR+ RS + RS RSRSR RR R +S RS+S R
Sbjct: 1836 SRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSP 1895
Query: 170 --RSRSASLRRSRSGSIKGSRYFQSPSRS---RSRSRSISRPRSSRSKSR------SPSP 218
RS+S +R RS S + ++ SR+ RSRS + SR R SRS R SPS
Sbjct: 1896 KHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPS- 1954
Query: 219 KRSRSPSGSPRRSASPER 236
+RSR+PS RRS +P R
Sbjct: 1955 RRSRTPS---RRSRTPSR 1969
Score = 61.6 bits (148), Expect = 6e-10
Identities = 60/119 (50%), Positives = 68/119 (57%), Gaps = 17/119 (14%)
Query: 120 HRYSRRRRSRS----RSRSHSRSRGRRYSRSRSRSRGRRSRSAS------PRRSRSISLR 169
H SRRRRSRS RS S S SR R RSR+ RRSR+ S RRSR+ S R
Sbjct: 1932 HTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPS-R 1990
Query: 170 RSRSASLRRSRSGSIKGSRYFQ-SPSRSRSRSRSISRPRSSRS---KSRSPSPKRSRSP 224
RSR+ S RR RS S+ R F SP R R RSR+ R R SRS + RS S +R RSP
Sbjct: 1991 RSRTPS-RRRRSRSVVRRRSFSISPVRLR-RSRTPLRRRFSRSPIRRKRSRSSERGRSP 2047
Score = 61.2 bits (147), Expect = 7e-10
Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 124 RRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRS-ASPRRSRSISLRRSRSASLRRSRSG 182
R R RS+S H + SRSR+R R +S+S S RSRS S RR RS+ R G
Sbjct: 1823 RSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRG 1882
Query: 183 -------SIKGSRYFQSPSRSRSRSRSISRP--RSSRSKSRSPSPKRSRSPSGSPRR 230
K S +S SR R R RS SR ++ R++SR+PS +RSRS + S RR
Sbjct: 1883 RRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPS-RRSRSHTPSRRR 1938
Score = 60.8 bits (146), Expect = 1e-09
Identities = 59/135 (43%), Positives = 71/135 (52%), Gaps = 13/135 (9%)
Query: 87 RRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRS 146
RRSR P RR R G + ++ SRR R+ SR RS + SR R
Sbjct: 1927 RRSRSHTPSRRR------RSRSVGRRRSFSISP---SRRSRTPSR-RSRTPSRRSRTPSR 1976
Query: 147 RSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSR-SRSISR 205
RSR+ RRSR+ S RRSR+ S RR RS S+ R RS SI R +S + R R SRS R
Sbjct: 1977 RSRTPSRRSRTPS-RRSRTPS-RRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIR 2034
Query: 206 PRSSRSKSRSPSPKR 220
+ SRS R SPKR
Sbjct: 2035 RKRSRSSERGRSPKR 2049
Score = 58.9 bits (141), Expect = 4e-09
Identities = 45/130 (34%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 118 DCHRYSRRRRSRSRSR------SHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRS 171
D H S++ ++R + S RSR +R S +SR R S S S R RS +
Sbjct: 1798 DTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSH 1857
Query: 172 RSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPR-- 229
RS + RSRS + S +S SR R R RS + +S+S KR RS S R
Sbjct: 1858 RSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKT 1917
Query: 230 ---RSASPER 236
RS +P R
Sbjct: 1918 VRARSRTPSR 1927
Score = 58.2 bits (139), Expect = 6e-09
Identities = 65/139 (46%), Positives = 79/139 (56%), Gaps = 31/139 (22%)
Query: 120 HRYSRRRRSRS---RSRSHSRSRGRRYSRSRSRSRG-RRSRSASPRRSRSISLRRSRSAS 175
+R + R RSR+ RSRSH+ SR R RSRS G RRS S SP R RRSR+ S
Sbjct: 1914 NRKTVRARSRTPSRRSRSHTPSR-----RRRSRSVGRRRSFSISPSRRSRTPSRRSRTPS 1968
Query: 176 LRRSRSGSIKG---SRYFQSPSRSRSRSRSISRPRSSRS----KSRSPSP---KRSRSP- 224
RRSR+ S + SR ++PSR RSR+ SR R SRS +S S SP +RSR+P
Sbjct: 1969 -RRSRTPSRRSRTPSRRSRTPSR---RSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPL 2024
Query: 225 ----SGSP---RRSASPER 236
S SP +RS S ER
Sbjct: 2025 RRRFSRSPIRRKRSRSSER 2043
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 68.9 bits (167), Expect = 4e-12
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 121 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGR-RSRSASPRRSRSISLRRSRSASLRRS 179
R +R++S+SRSRSH R R + R RSR R R +S+S +RSRS RRSRS S R
Sbjct: 31 RSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRR 90
Query: 180 RSGSIKGSRYFQSPSRSRSRSRSISRPRS---SRSKSRSPSP-KRSRSPSGSPRRSASPE 235
G + + P + + I P S SR +SRS SP ++ +SP P + +PE
Sbjct: 91 FRGRYRSP--YSGPKFNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPE 148
Query: 236 RMD 238
D
Sbjct: 149 ERD 151
Score = 48.9 bits (115), Expect = 4e-06
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 34/137 (24%)
Query: 122 YSRRRRSRSRSRSHS-RSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR 180
Y + S + H RS+ R+ S+SRSRS +RS+S +RSR ++S+
Sbjct: 15 YKKDENKLSSANGHEERSKKRKKSKSRSRSH-------ERKRSKSKERKRSRDRERKKSK 67
Query: 181 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSP--SPK------------------R 220
S K SR S+ R RSRS SR R R + RSP PK R
Sbjct: 68 SRERKRSR-----SKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSR 122
Query: 221 SRSPSGSP-RRSASPER 236
RS S SP R+ SP R
Sbjct: 123 RRSRSKSPFRKDKSPVR 139
Score = 30.8 bits (68), Expect = 1.1
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 9 GETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPP-----GFAFVEFEDPRDAEDA 63
G ++YVG+L + L F +G + ++ + + G+ F+ F D A+ A
Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 64 VRGLDGKVICGSRVRV 79
+ L+G + G ++V
Sbjct: 308 LEQLNGFELAGRPMKV 323
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 68.9 bits (167), Expect = 4e-12
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 121 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGR-RSRSASPRRSRSISLRRSRSASLRRS 179
R +R++S+SRSRSH R R + R RSR R R +S+S +RSRS RRSRS S R
Sbjct: 31 RSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRR 90
Query: 180 RSGSIKGSRYFQSPSRSRSRSRSISRPRS---SRSKSRSPSP-KRSRSPSGSPRRSASPE 235
G + + P + + I P S SR +SRS SP ++ +SP P + +PE
Sbjct: 91 FRGRYRSP--YSGPKFNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPE 148
Query: 236 RMD 238
D
Sbjct: 149 ERD 151
Score = 48.9 bits (115), Expect = 4e-06
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 34/137 (24%)
Query: 122 YSRRRRSRSRSRSHS-RSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR 180
Y + S + H RS+ R+ S+SRSRS +RS+S +RSR ++S+
Sbjct: 15 YKKDENKLSSANGHEERSKKRKKSKSRSRSH-------ERKRSKSKERKRSRDRERKKSK 67
Query: 181 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSP--SPK------------------R 220
S K SR S+ R RSRS SR R R + RSP PK R
Sbjct: 68 SRERKRSR-----SKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSR 122
Query: 221 SRSPSGSP-RRSASPER 236
RS S SP R+ SP R
Sbjct: 123 RRSRSKSPFRKDKSPVR 139
Score = 30.8 bits (68), Expect = 1.1
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 9 GETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPP-----GFAFVEFEDPRDAEDA 63
G ++YVG+L + L F +G + ++ + + G+ F+ F D A+ A
Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 64 VRGLDGKVICGSRVRV 79
+ L+G + G ++V
Sbjct: 308 LEQLNGFELAGRPMKV 323
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 68.9 bits (167), Expect = 4e-12
Identities = 59/130 (45%), Positives = 66/130 (50%), Gaps = 29/130 (22%)
Query: 125 RRRSRSRSRSHSRSRGR------------RYSRSRSRSRGR-RSRSASPRRSRSIS---L 168
R+RS SR RS SRSR R R SRSR R R R RSRS RRSRS L
Sbjct: 9 RKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRL 68
Query: 169 RRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSP 228
RRSRS RSR + SRSR R RS SR R RS+S SP K ++ +
Sbjct: 69 RRSRSRERDRSRE---------RRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTEN--- 116
Query: 229 RRSASPERMD 238
RS S E+ D
Sbjct: 117 -RSRSKEKTD 125
Score = 64.7 bits (156), Expect = 7e-11
Identities = 44/115 (38%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 124 RRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGS 183
RR RSR R R RSR R RSRSR R R RS S R RS RRSRS RRSR
Sbjct: 38 RRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSR--- 94
Query: 184 IKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD 238
SRSR R S P + K+ + S + ++ G + ++ D
Sbjct: 95 ----------SRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGGESSKEKKKDKDD 139
Score = 59.3 bits (142), Expect = 3e-09
Identities = 48/111 (43%), Positives = 54/111 (48%), Gaps = 16/111 (14%)
Query: 127 RSRSRSRSHSRSRGRRYSRSRSRSRG-RRSRSASPRRSRSISLRRSRSASLRRSRSGSIK 185
R R S SRGR SRSRSRS +RS+ RRSRS R RR RS
Sbjct: 3 RESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRS------RDRDRRRERS---- 52
Query: 186 GSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
+S + RSRSR R R SRS+ R S +R RS S RRS S R
Sbjct: 53 -----RSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSR 98
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,218,118
Number of Sequences: 37866
Number of extensions: 538784
Number of successful extensions: 14747
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 479
Number of HSP's that attempted gapping in prelim test: 4722
Number of HSP's gapped (non-prelim): 3654
length of query: 238
length of database: 18,247,518
effective HSP length: 99
effective length of query: 139
effective length of database: 14,498,784
effective search space: 2015330976
effective search space used: 2015330976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.