Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 71979925
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo
sapiens]
(90 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo sa... 191 1e-49
gi|4758790 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa... 33 0.037
gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] 29 0.69
gi|4758528 hepatocyte growth factor-regulated tyrosine kinase su... 29 0.90
gi|54792138 helicase with zinc finger domain [Homo sapiens] 29 0.90
gi|42558252 coiled-coil-helix-coiled-coil-helix domain containin... 28 1.5
gi|110556640 DNA helicase HEL308 [Homo sapiens] 27 4.5
gi|4503611 ets variant 6 [Homo sapiens] 26 5.9
gi|8923390 coiled-coil-helix-coiled-coil-helix domain containing... 26 5.9
gi|58743365 ring finger protein 157 [Homo sapiens] 26 5.9
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 26 5.9
gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens] 26 5.9
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 26 5.9
gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens] 26 5.9
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 26 5.9
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is... 26 5.9
gi|219879802 hypothetical protein LOC91574 [Homo sapiens] 26 7.7
gi|22748627 hypothetical protein LOC91574 [Homo sapiens] 26 7.7
gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens] 26 7.7
gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens] 26 7.7
gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens] 26 7.7
gi|58761520 coiled-coil-helix-coiled-coil-helix domain containin... 26 7.7
gi|58761514 coiled-coil-helix-coiled-coil-helix domain containin... 26 7.7
gi|64464338 coiled-coil-helix-coiled-coil-helix domain containin... 26 7.7
gi|4758104 cytochrome P450, family 7, subfamily B, polypeptide 1... 25 10.0
>gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo
sapiens]
Length = 90
Score = 191 bits (485), Expect = 1e-49
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MSTAMNFGTKSFQPRPPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKEYLE 60
MSTAMNFGTKSFQPRPPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKEYLE
Sbjct: 1 MSTAMNFGTKSFQPRPPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKEYLE 60
Query: 61 CRMERKLMLQEPLEKLGFGDLTSGKSEAKK 90
CRMERKLMLQEPLEKLGFGDLTSGKSEAKK
Sbjct: 61 CRMERKLMLQEPLEKLGFGDLTSGKSEAKK 90
>gi|4758790 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
Length = 106
Score = 33.5 bits (75), Expect = 0.037
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 20 GSFPLDHLGECKSFKEKFMKCLHNNNFENA--LCRKESKEYLECRMERKLM 68
G P G C +F++++++C H + A C+ E +++EC + +K M
Sbjct: 23 GEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQKTM 73
>gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens]
Length = 84
Score = 29.3 bits (64), Expect = 0.69
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 32 SFKEKFMKCLHNNNFENALCRKESKEYLECRMERKLMLQ 70
S K ++C+ N+ A C+K + YL CR + LQ
Sbjct: 20 SGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQ 58
>gi|4758528 hepatocyte growth factor-regulated tyrosine kinase
substrate [Homo sapiens]
Length = 777
Score = 28.9 bits (63), Expect = 0.90
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 13 QPRPPDKGSF--PLDHLGECKSFKEKFMKCLHN 43
QP PP G F P H GE + E+F+K L N
Sbjct: 382 QPIPPSGGPFSEPQFHNGESEESHEQFLKALQN 414
>gi|54792138 helicase with zinc finger domain [Homo sapiens]
Length = 1942
Score = 28.9 bits (63), Expect = 0.90
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 27 LGECKSFKEKFMKCLHNNNFENALCRKESKEYLECRMERKLMLQEPL 73
+G C+ F E+F+ H N+ + + ++ K LE +K + PL
Sbjct: 1057 IGRCRKFWERFIALCHENSSLHGITFEQIKAQLEALELKKTYVLNPL 1103
>gi|42558252 coiled-coil-helix-coiled-coil-helix domain containing
1 [Homo sapiens]
Length = 118
Score = 28.1 bits (61), Expect = 1.5
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 30 CKSFKEKFMKCLHNNNFENALCRKESKEYLEC--RMERKLMLQEPLEKLG 77
C + M C N F + CRKE + +L+C R + ++ E LG
Sbjct: 45 CITEMSVMMACWKQNEFRDDACRKEIQGFLDCAARAQEARKMRSIQETLG 94
>gi|110556640 DNA helicase HEL308 [Homo sapiens]
Length = 1101
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 40 CLHNNNFENA---LCRKESKEYLECRMERKLMLQEPLEKLGFGDL 81
C N EN +C+ SKEYL+ + + K + + L+ +G G+L
Sbjct: 584 CPSKKNCENVAEMICKFLSKEYLKHKEKEKCEVIKNLKNIGNGNL 628
>gi|4503611 ets variant 6 [Homo sapiens]
Length = 452
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 16 PPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKE 57
PP++ + P+ + +C+ + + L ++ +EN + R E KE
Sbjct: 324 PPEEHAMPIGRIADCRLLWDYVYQLLSDSRYENFI-RWEDKE 364
>gi|8923390 coiled-coil-helix-coiled-coil-helix domain containing 3
[Homo sapiens]
Length = 227
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 30 CKSFKEKFMKCLHNNNFENALCRKESKEYLECRMERKLMLQEPLEKLG 77
C + K ++C N + C + +Y+ C K Q LEK G
Sbjct: 183 CADLQAKILQCYRENTHQTLKCSALATQYMHCVNHAK---QSMLEKGG 227
>gi|58743365 ring finger protein 157 [Homo sapiens]
Length = 679
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 16 PPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKEYLECRMERKLMLQEP 72
PP + PLD L + S K K L + +N+ E ++ C + Q P
Sbjct: 408 PPVRTISPLDRLSDSSSQGLKLKKSLSKSTSQNSSVLHEEEDEHSCSESETQLSQRP 464
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 16 PPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKE 57
PP KG LD L E F K + N E CR+ +E
Sbjct: 2556 PPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRKEE 2597
>gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens]
Length = 1668
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 16 PPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKE 57
PP KG LD L E F K + N E CR+ +E
Sbjct: 891 PPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRKEE 932
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 16 PPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKE 57
PP KG LD L E F K + N E CR+ +E
Sbjct: 2500 PPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRKEE 2541
>gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens]
Length = 1724
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 16 PPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKE 57
PP KG LD L E F K + N E CR+ +E
Sbjct: 947 PPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRKEE 988
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 24 LDHLGECKSFKEKFMKCLHNNNFENALCRKE--SKEYLECRMERKLMLQEPLEKL 76
LDH +C K+ +CL + + + +E +K E ER+ + +E +E+L
Sbjct: 495 LDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRKLYEEEMEEL 549
>gi|37622896 LON peptidase N-terminal domain and ring finger 3
isoform 2 [Homo sapiens]
Length = 718
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 24 LDHLGECKSFKEKFMKCLHNNNFENALCRKE--SKEYLECRMERKLMLQEPLEKL 76
LDH +C K+ +CL + + + +E +K E ER+ + +E +E+L
Sbjct: 454 LDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRKLYEEEMEEL 508
>gi|219879802 hypothetical protein LOC91574 [Homo sapiens]
Length = 166
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 45 NFENALCRKESKEYLECRMERKLMLQEPLEK 75
N EN+ KE +E + + ERK +E LEK
Sbjct: 121 NGENSPVHKEKREAAKKKQERKKRAKETLEK 151
>gi|22748627 hypothetical protein LOC91574 [Homo sapiens]
Length = 166
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 45 NFENALCRKESKEYLECRMERKLMLQEPLEK 75
N EN+ KE +E + + ERK +E LEK
Sbjct: 121 NGENSPVHKEKREAAKKKQERKKRAKETLEK 151
>gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]
Length = 1179
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 30 CKSFKEKFMKCLHNNNFENALCRKESKEYLECRMERKLM-LQE 71
CKS + F + N + C KE+K+ L R +K+ LQE
Sbjct: 826 CKSDIKNFCSAVQYGNAQIIECLKENKKQLSTRCHQKVFKLQE 868
Score = 25.4 bits (54), Expect = 10.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 39 KCLHNNNFENALCRKESKEYLECRMERKLMLQEPLEKLGFGDLTSGKSEAKK 90
KCL N+ FE ++ K +E L R +KL+ Q+ K+ + S KS+ KK
Sbjct: 336 KCLFNHKFEESMSEK-CREALTTR--QKLIAQD--YKVSYSLAKSCKSDLKK 382
>gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens]
Length = 1192
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 30 CKSFKEKFMKCLHNNNFENALCRKESKEYLECRMERKLM-LQE 71
CKS + F + N + C KE+K+ L R +K+ LQE
Sbjct: 815 CKSDIKNFCSAVQYGNAQIIECLKENKKQLSTRCHQKVFKLQE 857
Score = 25.4 bits (54), Expect = 10.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 39 KCLHNNNFENALCRKESKEYLECRMERKLMLQEPLEKLGFGDLTSGKSEAKK 90
KCL N+ FE ++ K +E L R +KL+ Q+ K+ + S KS+ KK
Sbjct: 325 KCLFNHKFEESMSEK-CREALTTR--QKLIAQD--YKVSYSLAKSCKSDLKK 371
>gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens]
Length = 1203
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 30 CKSFKEKFMKCLHNNNFENALCRKESKEYLECRMERKLM-LQE 71
CKS + F + N + C KE+K+ L R +K+ LQE
Sbjct: 826 CKSDIKNFCSAVQYGNAQIIECLKENKKQLSTRCHQKVFKLQE 868
Score = 25.4 bits (54), Expect = 10.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 39 KCLHNNNFENALCRKESKEYLECRMERKLMLQEPLEKLGFGDLTSGKSEAKK 90
KCL N+ FE ++ K +E L R +KL+ Q+ K+ + S KS+ KK
Sbjct: 336 KCLFNHKFEESMSEK-CREALTTR--QKLIAQD--YKVSYSLAKSCKSDLKK 382
>gi|58761520 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform f [Homo sapiens]
Length = 85
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 27 LGECKSFKEKFMKCLHNNNFENALCRKESKEYLECR 62
+ C S + +CL NN++ C Y CR
Sbjct: 13 INPCLSESDASTRCLDENNYDRERCSTYFLRYKNCR 48
>gi|58761514 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform b [Homo sapiens]
Length = 110
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 27 LGECKSFKEKFMKCLHNNNFENALCRKESKEYLECR 62
+ C S + +CL NN++ C Y CR
Sbjct: 38 INPCLSESDASTRCLDENNYDRERCSTYFLRYKNCR 73
>gi|64464338 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform d [Homo sapiens]
Length = 97
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 27 LGECKSFKEKFMKCLHNNNFENALCRKESKEYLECR 62
+ C S + +CL NN++ C Y CR
Sbjct: 25 INPCLSESDASTRCLDENNYDRERCSTYFLRYKNCR 60
>gi|4758104 cytochrome P450, family 7, subfamily B, polypeptide 1
[Homo sapiens]
Length = 506
Score = 25.4 bits (54), Expect = 10.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 21 SFPLDHLGECKSFKEKFMKC 40
+ P++ LG KS +EK +KC
Sbjct: 229 NIPIELLGNVKSIREKIIKC 248
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,998,175
Number of Sequences: 37866
Number of extensions: 159173
Number of successful extensions: 447
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 28
length of query: 90
length of database: 18,247,518
effective HSP length: 62
effective length of query: 28
effective length of database: 15,899,826
effective search space: 445195128
effective search space used: 445195128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.