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Search of human proteins with 71725367
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71725367 primary ciliary dyskinesia protein 1 [Homo sapiens]
(554 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71725367 primary ciliary dyskinesia protein 1 [Homo sapiens] 1111 0.0
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 39 0.012
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 36 0.11
gi|148612831 kinesin family member 18A [Homo sapiens] 35 0.18
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 35 0.23
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 35 0.23
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 35 0.23
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 35 0.23
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 35 0.23
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 35 0.23
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 35 0.23
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 35 0.23
gi|221219020 NYD-SP11 protein [Homo sapiens] 34 0.40
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 34 0.40
gi|190341068 forkhead-associated (FHA) phosphopeptide binding do... 33 0.52
gi|4502805 chromogranin A precursor [Homo sapiens] 33 0.68
gi|148746195 trichohyalin [Homo sapiens] 33 0.68
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] 33 0.89
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 33 0.89
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 33 0.89
gi|8922950 meiosis-specific nuclear structural 1 [Homo sapiens] 33 0.89
gi|148839339 nexilin (F actin binding protein) [Homo sapiens] 33 0.89
gi|148806891 hypothetical protein LOC54906 [Homo sapiens] 33 0.89
gi|222537750 ankyrin repeat domain 30B [Homo sapiens] 32 1.2
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 32 1.2
gi|118498362 kinectin 1 isoform b [Homo sapiens] 32 1.5
gi|238908495 similar to pleckstrin homology domain protein (5V32... 32 1.5
gi|46852174 kinesin family member 3A [Homo sapiens] 32 1.5
gi|45439327 periplakin [Homo sapiens] 32 1.5
gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo... 32 2.0
>gi|71725367 primary ciliary dyskinesia protein 1 [Homo sapiens]
Length = 554
Score = 1111 bits (2873), Expect = 0.0
Identities = 554/554 (100%), Positives = 554/554 (100%)
Query: 1 MHINFHRPPAKPKPQKVKEIEYQNLRFPVDLSNPFAVATVLNQEPGKLKIKELREVLDQG 60
MHINFHRPPAKPKPQKVKEIEYQNLRFPVDLSNPFAVATVLNQEPGKLKIKELREVLDQG
Sbjct: 1 MHINFHRPPAKPKPQKVKEIEYQNLRFPVDLSNPFAVATVLNQEPGKLKIKELREVLDQG 60
Query: 61 TEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELTEEWQKACAKY 120
TEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELTEEWQKACAKY
Sbjct: 61 TEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELTEEWQKACAKY 120
Query: 121 KLDRGDPILDEEFQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNTWLSRSRAQKRFQQ 180
KLDRGDPILDEEFQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNTWLSRSRAQKRFQQ
Sbjct: 121 KLDRGDPILDEEFQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNTWLSRSRAQKRFQQ 180
Query: 181 VARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFFLRRISQDDYTSRF 240
VARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFFLRRISQDDYTSRF
Sbjct: 181 VARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFFLRRISQDDYTSRF 240
Query: 241 SVSPKEVLPFAFPDCSPPQDSNELAPDGLGLVPIKSSEVQIKQSYSFFNLQVPQLYKIKR 300
SVSPKEVLPFAFPDCSPPQDSNELAPDGLGLVPIKSSEVQIKQSYSFFNLQVPQLYKIKR
Sbjct: 241 SVSPKEVLPFAFPDCSPPQDSNELAPDGLGLVPIKSSEVQIKQSYSFFNLQVPQLYKIKR 300
Query: 301 YQPFSVHKSSTSYRPQKLARALKQGAEDEVTTITALPKQDSTTQLSGKTSILSMKPPEAL 360
YQPFSVHKSSTSYRPQKLARALKQGAEDEVTTITALPKQDSTTQLSGKTSILSMKPPEAL
Sbjct: 301 YQPFSVHKSSTSYRPQKLARALKQGAEDEVTTITALPKQDSTTQLSGKTSILSMKPPEAL 360
Query: 361 AMSLDYDPLYVFNPNPGLFAVMHPLTYAETLIDYHLCSHPKYKFTKESRHGSSIPVTQKQ 420
AMSLDYDPLYVFNPNPGLFAVMHPLTYAETLIDYHLCSHPKYKFTKESRHGSSIPVTQKQ
Sbjct: 361 AMSLDYDPLYVFNPNPGLFAVMHPLTYAETLIDYHLCSHPKYKFTKESRHGSSIPVTQKQ 420
Query: 421 FLHHTDIIPGIMHWKSFQSLVLSSLPDPSKMETTKSCDSFNSFMLPIDVPAILDALPEED 480
FLHHTDIIPGIMHWKSFQSLVLSSLPDPSKMETTKSCDSFNSFMLPIDVPAILDALPEED
Sbjct: 421 FLHHTDIIPGIMHWKSFQSLVLSSLPDPSKMETTKSCDSFNSFMLPIDVPAILDALPEED 480
Query: 481 RLETVERELCEQNVEVMLTPEMIKVEFPMLNYKDIRKEKEVKDQAQPAEKAGEKLLEEMR 540
RLETVERELCEQNVEVMLTPEMIKVEFPMLNYKDIRKEKEVKDQAQPAEKAGEKLLEEMR
Sbjct: 481 RLETVERELCEQNVEVMLTPEMIKVEFPMLNYKDIRKEKEVKDQAQPAEKAGEKLLEEMR 540
Query: 541 NLRGKALNTYLILE 554
NLRGKALNTYLILE
Sbjct: 541 NLRGKALNTYLILE 554
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 38.9 bits (89), Expect = 0.012
Identities = 44/187 (23%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 26 RFPVDLSNPFAVATVLNQEPGKLKIKELREVLDQGTEISKTRQMKEALFEQKVRQDIHEE 85
R V+LS L +E +++ K + + + ++ + R+ KE Q ++ +I++
Sbjct: 362 RIHVELSEKGEATQKLKEELSEVETK-YQHLKAEFKQLQQQREEKEQHGLQ-LQSEINQL 419
Query: 86 MENHLKWQVHLG------KDPMSFKLKKELTEEWQKACAKYKLDRGDPILDEEFQRLKTE 139
L+ + LG K+ +K + +E Q A + KL R L+E+ LK +
Sbjct: 420 HSKLLETERQLGEAHGRLKEQRQLSSEKLMDKEQQVADLQLKLSR----LEEQ---LKEK 472
Query: 140 VSHKRVVRNQEEKIKEFHPTFDPLINNTWLSRSRAQKRFQQVARKVMIQGRLFNMLSAVR 199
V++ +++Q +K K+ H L +T AQ +QV R++ + + L A+
Sbjct: 473 VTNSTELQHQLDKTKQQHQEQQALQQSTTAKLREAQNDLEQVLRQIGDKDQKIQNLEALL 532
Query: 200 EMDKESI 206
+ KE+I
Sbjct: 533 QKSKENI 539
>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
sapiens]
Length = 1940
Score = 35.8 bits (81), Expect = 0.11
Identities = 72/373 (19%), Positives = 161/373 (43%), Gaps = 57/373 (15%)
Query: 15 QKVKEIE--YQNLRFPVDLSNPFAVATVLNQEPGKLKIKELREVLDQGTEISKTR----Q 68
+K+KE++ + L ++ T + +++EL E L++ ++ T+ +
Sbjct: 1107 KKIKELQARIEELEEEIEAERATRAKTEKQRSDYARELEELSERLEEAGGVTSTQIELNK 1166
Query: 69 MKEALFEQKVRQDI------HEEM-----ENHLKWQVHLGKDPMSFKLKKELTEEWQKAC 117
+EA F K+R+D+ HE M + H LG+ + + K+ E K
Sbjct: 1167 KREAEF-LKLRRDLEEATLQHEAMVAALRKKHADSVAELGEQIDNLQRVKQKLE---KEK 1222
Query: 118 AKYKLDRGDPILDEEFQRL-KTEVSHKRVVRNQEEKIKEFHPTFDPLINNTWLSRSRAQK 176
+++KL+ D L + + K++ + +++ R E+++ E N + RS ++
Sbjct: 1223 SEFKLEIDD--LSSSMESVSKSKANLEKICRTLEDQLSEARG------KNEEIQRSLSEL 1274
Query: 177 RFQQVARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFFLRRISQDDY 236
Q+ +R G L L +KESI+ ++ ++KQ+ Q+ K R++ +++
Sbjct: 1275 TTQK-SRLQTEAGELSRQLE-----EKESIVSQLSRSKQAFTQQTEELK---RQLEEENK 1325
Query: 237 TSRFSVSPKEVLPFAFPDCSPPQDSNELAPDGLGLVPIKSSEVQIKQSYSFFNLQVPQLY 296
+ L + DC ++ E +G + +++++ S N +V Q
Sbjct: 1326 AKN---ALAHALQSSRHDCDLLREQYEEEQEG---------KAELQRALSKANSEVAQWR 1373
Query: 297 KIKRYQPFSVHKSSTSYRPQKLARALKQGAEDEVTTITA----LPKQDSTTQLSGKTSIL 352
+Y+ ++ ++ +K Q +E++V + A L K Q + ++
Sbjct: 1374 --TKYETDAIQRTEELEEAKKKLAQRLQDSEEQVEAVNAKCASLEKTKQRLQGEVEDLMV 1431
Query: 353 SMKPPEALAMSLD 365
++ +LA +LD
Sbjct: 1432 DVERANSLAAALD 1444
>gi|148612831 kinesin family member 18A [Homo sapiens]
Length = 898
Score = 35.0 bits (79), Expect = 0.18
Identities = 26/113 (23%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 59 QGTEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELTEEWQKACA 118
Q EI + +++ LF+ R++I +E +LK ++ L ++ + +++ ++ + C+
Sbjct: 415 QEKEIERFQEILNCLFQN--REEIRQE---YLKLEMLLKENELKSFYQQQCHKQIEMMCS 469
Query: 119 KYKLDRGDPILDEEFQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNTWLSR 171
+ K+++ D LKT S+ + + +EE++K+F N WL R
Sbjct: 470 EDKVEKATGKRDHRLAMLKTRRSY--LEKRREEELKQFDE------NTNWLHR 514
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 34.7 bits (78), Expect = 0.23
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 51 KELREVLDQGTEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELT 110
++LR+ +Q E ++ Q ++A QK D EME H K+ L+++
Sbjct: 2136 EKLRKEAEQ--EAARRAQAEQAALRQKQAADA--EMEKHKKFAEQT--------LRQKAQ 2183
Query: 111 EEWQKACAKYKLDRGDP---ILDEEFQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNT 167
E + + +L+ D +LDEE QRLK E + R+Q E+ F +
Sbjct: 2184 VEQELTTLRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEE-----ELFSVRVQME 2238
Query: 168 WLSRSRAQKRFQQVARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFF 227
LS+ +A R + R ++++ + E +K + + AQEA
Sbjct: 2239 ELSKLKA--RIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEA----AR 2292
Query: 228 LRRISQDDYTSRFSVSPK 245
LR+++++D + +++ K
Sbjct: 2293 LRQLAEEDLAQQRALAEK 2310
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 34.7 bits (78), Expect = 0.23
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 51 KELREVLDQGTEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELT 110
++LR+ +Q E ++ Q ++A QK D EME H K+ L+++
Sbjct: 2140 EKLRKEAEQ--EAARRAQAEQAALRQKQAADA--EMEKHKKFAEQT--------LRQKAQ 2187
Query: 111 EEWQKACAKYKLDRGDP---ILDEEFQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNT 167
E + + +L+ D +LDEE QRLK E + R+Q E+ F +
Sbjct: 2188 VEQELTTLRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEE-----ELFSVRVQME 2242
Query: 168 WLSRSRAQKRFQQVARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFF 227
LS+ +A R + R ++++ + E +K + + AQEA
Sbjct: 2243 ELSKLKA--RIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEA----AR 2296
Query: 228 LRRISQDDYTSRFSVSPK 245
LR+++++D + +++ K
Sbjct: 2297 LRQLAEEDLAQQRALAEK 2314
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 34.7 bits (78), Expect = 0.23
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 51 KELREVLDQGTEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELT 110
++LR+ +Q E ++ Q ++A QK D EME H K+ L+++
Sbjct: 2136 EKLRKEAEQ--EAARRAQAEQAALRQKQAADA--EMEKHKKFAEQT--------LRQKAQ 2183
Query: 111 EEWQKACAKYKLDRGDP---ILDEEFQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNT 167
E + + +L+ D +LDEE QRLK E + R+Q E+ F +
Sbjct: 2184 VEQELTTLRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEE-----ELFSVRVQME 2238
Query: 168 WLSRSRAQKRFQQVARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFF 227
LS+ +A R + R ++++ + E +K + + AQEA
Sbjct: 2239 ELSKLKA--RIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEA----AR 2292
Query: 228 LRRISQDDYTSRFSVSPK 245
LR+++++D + +++ K
Sbjct: 2293 LRQLAEEDLAQQRALAEK 2310
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 34.7 bits (78), Expect = 0.23
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 51 KELREVLDQGTEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELT 110
++LR+ +Q E ++ Q ++A QK D EME H K+ L+++
Sbjct: 2104 EKLRKEAEQ--EAARRAQAEQAALRQKQAADA--EMEKHKKFAEQT--------LRQKAQ 2151
Query: 111 EEWQKACAKYKLDRGDP---ILDEEFQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNT 167
E + + +L+ D +LDEE QRLK E + R+Q E+ F +
Sbjct: 2152 VEQELTTLRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEE-----ELFSVRVQME 2206
Query: 168 WLSRSRAQKRFQQVARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFF 227
LS+ +A R + R ++++ + E +K + + AQEA
Sbjct: 2207 ELSKLKA--RIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEA----AR 2260
Query: 228 LRRISQDDYTSRFSVSPK 245
LR+++++D + +++ K
Sbjct: 2261 LRQLAEEDLAQQRALAEK 2278
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 34.7 bits (78), Expect = 0.23
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 51 KELREVLDQGTEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELT 110
++LR+ +Q E ++ Q ++A QK D EME H K+ L+++
Sbjct: 2273 EKLRKEAEQ--EAARRAQAEQAALRQKQAADA--EMEKHKKFAEQT--------LRQKAQ 2320
Query: 111 EEWQKACAKYKLDRGDP---ILDEEFQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNT 167
E + + +L+ D +LDEE QRLK E + R+Q E+ F +
Sbjct: 2321 VEQELTTLRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEE-----ELFSVRVQME 2375
Query: 168 WLSRSRAQKRFQQVARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFF 227
LS+ +A R + R ++++ + E +K + + AQEA
Sbjct: 2376 ELSKLKA--RIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEA----AR 2429
Query: 228 LRRISQDDYTSRFSVSPK 245
LR+++++D + +++ K
Sbjct: 2430 LRQLAEEDLAQQRALAEK 2447
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 34.7 bits (78), Expect = 0.23
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 51 KELREVLDQGTEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELT 110
++LR+ +Q E ++ Q ++A QK D EME H K+ L+++
Sbjct: 2114 EKLRKEAEQ--EAARRAQAEQAALRQKQAADA--EMEKHKKFAEQT--------LRQKAQ 2161
Query: 111 EEWQKACAKYKLDRGDP---ILDEEFQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNT 167
E + + +L+ D +LDEE QRLK E + R+Q E+ F +
Sbjct: 2162 VEQELTTLRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEE-----ELFSVRVQME 2216
Query: 168 WLSRSRAQKRFQQVARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFF 227
LS+ +A R + R ++++ + E +K + + AQEA
Sbjct: 2217 ELSKLKA--RIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEA----AR 2270
Query: 228 LRRISQDDYTSRFSVSPK 245
LR+++++D + +++ K
Sbjct: 2271 LRQLAEEDLAQQRALAEK 2288
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 34.7 bits (78), Expect = 0.23
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 51 KELREVLDQGTEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELT 110
++LR+ +Q E ++ Q ++A QK D EME H K+ L+++
Sbjct: 2122 EKLRKEAEQ--EAARRAQAEQAALRQKQAADA--EMEKHKKFAEQT--------LRQKAQ 2169
Query: 111 EEWQKACAKYKLDRGDP---ILDEEFQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNT 167
E + + +L+ D +LDEE QRLK E + R+Q E+ F +
Sbjct: 2170 VEQELTTLRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEE-----ELFSVRVQME 2224
Query: 168 WLSRSRAQKRFQQVARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFF 227
LS+ +A R + R ++++ + E +K + + AQEA
Sbjct: 2225 ELSKLKA--RIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEA----AR 2278
Query: 228 LRRISQDDYTSRFSVSPK 245
LR+++++D + +++ K
Sbjct: 2279 LRQLAEEDLAQQRALAEK 2296
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 34.7 bits (78), Expect = 0.23
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 51 KELREVLDQGTEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELT 110
++LR+ +Q E ++ Q ++A QK D EME H K+ L+++
Sbjct: 2163 EKLRKEAEQ--EAARRAQAEQAALRQKQAADA--EMEKHKKFAEQT--------LRQKAQ 2210
Query: 111 EEWQKACAKYKLDRGDP---ILDEEFQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNT 167
E + + +L+ D +LDEE QRLK E + R+Q E+ F +
Sbjct: 2211 VEQELTTLRLQLEETDHQKNLLDEELQRLKAEATEAARQRSQVEE-----ELFSVRVQME 2265
Query: 168 WLSRSRAQKRFQQVARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFF 227
LS+ +A R + R ++++ + E +K + + AQEA
Sbjct: 2266 ELSKLKA--RIEAENRALILRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEA----AR 2319
Query: 228 LRRISQDDYTSRFSVSPK 245
LR+++++D + +++ K
Sbjct: 2320 LRQLAEEDLAQQRALAEK 2337
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 33.9 bits (76), Expect = 0.40
Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 41 LNQEPGKLK--IKELREVLDQGTEIS----KTRQMKEALFEQKVRQDIHEEMENHLKWQV 94
L++EP KL +K L+++ +++ K +MK ALF ++ R I + + +W
Sbjct: 2066 LSKEPAKLNKILKALQKLTRDERKLTQEEIKMTKMKRALFVKERRLSIEQSKLDIKEWDF 2125
Query: 95 HLGKDPMSFKLKKELTEEWQKACAKYK--LDRGDPILDEEFQRLKTEVSHKRVVRNQEEK 152
+ ++ K +K+L + +K K + +++ + + +EE K H V+ + EE+
Sbjct: 2126 SEKRSELT-KDEKKLARKQRKLANKMRRMINKEEKMTEEE---SKLARKHSEVILDDEEE 2181
Query: 153 IKEFHPTFDPLINNTWLSRSRAQK 176
P + W R A++
Sbjct: 2182 GGIEEEEVIPFLKRRWRKRKEAKR 2205
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 33.9 bits (76), Expect = 0.40
Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 8/151 (5%)
Query: 70 KEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELTEEWQKACAKYKLDRGDPIL 129
++ L EQK + HE+M+ K Q K K++K+ E+ +K + K+ R + +
Sbjct: 657 QQRLPEQKEKLWEHEKMQEQEKMQEQEEKIWEQEKMEKKTQEQEKKTWDQEKM-REEESM 715
Query: 130 DEEFQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNTWLSRSRAQKRFQQVARKVMIQG 189
E ++++ E + ++R QEEK++E W + +K ++Q K+ Q
Sbjct: 716 REREKKMREE---EEMMREQEEKMQEQEEKMQEQEEEMW---EQEEKMWEQ-EEKMWEQQ 768
Query: 190 RLFNMLSAVREMDKESILRKIGQAKQSIAQE 220
RL + E +K KI + ++ + +
Sbjct: 769 RLPEQKEKLWEHEKMQEQEKIWEQEEKMRDQ 799
Score = 30.8 bits (68), Expect = 3.4
Identities = 16/68 (23%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 478 EEDRLETVERELCEQNVEVMLTPEMIKVEFPMLNY--KDIRKEKEVKDQAQPAEKAGEKL 535
+E+RL E ++ EQ ++ + ++ + L K++R++KE+++Q + ++ EK+
Sbjct: 298 QEERLREQEGKMREQEEKMWRQEKRLREQEKELREQEKELREQKELREQEEQMQEQEEKM 357
Query: 536 LEEMRNLR 543
E+ +R
Sbjct: 358 WEQEEKMR 365
>gi|190341068 forkhead-associated (FHA) phosphopeptide binding
domain 1 [Homo sapiens]
Length = 1412
Score = 33.5 bits (75), Expect = 0.52
Identities = 44/215 (20%), Positives = 94/215 (43%), Gaps = 35/215 (16%)
Query: 36 AVATVLNQEPGKLK---------IKELREVLDQGTEISKT------RQMKEALFEQKVRQ 80
A+A + QE ++K ++EL E L + E+ ++ R+ KEAL +K +
Sbjct: 725 ALAKSITQEKNRVKEALEEEQTRVQELEERLARQKEVLESSIAHEKRKAKEALESEKRKV 784
Query: 81 DIHEEMENHLKWQVHLGKDPMSFKLKKELTEEWQKACAKYKLDRGDPILDEEFQRLKTEV 140
+++ENHL Q + + ++++ K++ E +K K K+ + L ++ + L+ +
Sbjct: 785 ---QDLENHLTQQKEISESNIAYE-KRKAKEAMEK--EKKKVQDLENRLTKQKEELELKE 838
Query: 141 SHKRVVRN------------QEEKIKEF--HPTFDPLINNTWLSRSRAQKRFQQVARKVM 186
+ V+ N Q+ K E + +N T + + V +++
Sbjct: 839 QKEDVLNNKLSDALAMVEETQKTKATESLKAESLALKLNETLAELETTKTKMIMVEERLI 898
Query: 187 IQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEA 221
+Q ++ L +E + +I + K+ I Q A
Sbjct: 899 LQQKMVKALQDEQESQRHGFEEEIMEYKEQIKQHA 933
>gi|4502805 chromogranin A precursor [Homo sapiens]
Length = 457
Score = 33.1 bits (74), Expect = 0.68
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 478 EEDRLETVERELCEQNVEVMLTPEMIKVEFPMLNYKDIRKEKEVKDQAQPAEKAGEKLLE 537
EE+ E E E E+ V P ++ P L YK+IRK E + +A + AG+ E
Sbjct: 228 EEEEEEEEEAEAGEEAVPEEEGPTVVLNPHPSLGYKEIRK-GESRSEALAVDGAGKPGAE 286
Query: 538 EMRNLRGK 545
E ++ GK
Sbjct: 287 EAQDPEGK 294
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 33.1 bits (74), Expect = 0.68
Identities = 32/143 (22%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 51 KELREVLDQGTEISKTRQMKEALFEQKVRQDIHEE-MENHLKWQVHLGKDPMSFKLKKEL 109
++LR ++ E R+ +E EQ++R++ EE E L+ + L ++ + +++L
Sbjct: 337 QQLRREQEERREQQLRREQEEERREQQLRREQEEERREQQLRREQQLRRE-QQLRREQQL 395
Query: 110 TEEWQKACAKYKLDRGDPILDEE----FQRLKTEVSHKRVVRNQEEKIKEFHPTFDPLIN 165
E Q+ + +L R + E+ Q+L+ E +R + E++ +E +
Sbjct: 396 RRE-QQLRREQQLRREQQLRREQQLRREQQLRREQEEERHEQKHEQERREQRLKREQEER 454
Query: 166 NTWLSRSRAQKRFQQVARKVMIQ 188
WL R +R +Q RK ++
Sbjct: 455 RDWLKREEETERHEQERRKQQLK 477
>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
Length = 1217
Score = 32.7 bits (73), Expect = 0.89
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Query: 39 TVLNQEPGKLKIKELREVLDQGTEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGK 98
T+ NQE + + K + T K+RQ+++A + + + + E LK ++ K
Sbjct: 226 TIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMK 285
Query: 99 DPMSFKLKKELTEEWQ---KACAKYKL---DRGDPILDEEFQRLKTEVSHKRVVRNQEEK 152
+ K++L+ E Q K K +L D D + QR + ++++ EEK
Sbjct: 286 EE-----KEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEK 340
Query: 153 IKEFHPTFDPLINNTWLSRSRAQKRFQQVARK 184
KE T +P N+ R R Q ++
Sbjct: 341 QKELAET-EPKFNSVKEKEERGIARLAQATQE 371
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 32.7 bits (73), Expect = 0.89
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Query: 7 RPPAKPKPQKVKEIEYQNLRFPVDLSNPFAVATVLNQEPG--KLKIKELREVLDQGTEIS 64
+P + +++ + Q L V+LS+ AT L ++ K+ + EL+ L Q T++
Sbjct: 3116 KPSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKSELAQ-TKLE 3174
Query: 65 KTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELTEEWQKACAKYKLDR 124
+K K + E+++ +VHL D ++ + KK +W K KL R
Sbjct: 3175 LETTLKAQHKHLKELEAFRLEVKDKTD-EVHLLNDTLASEQKKSRELQWALEKEKAKLGR 3233
Query: 125 GDPILDEEFQRLKTEVSHKR 144
+ EE + LK + ++
Sbjct: 3234 SEERDKEELEDLKFSLESQK 3253
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 32.7 bits (73), Expect = 0.89
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Query: 7 RPPAKPKPQKVKEIEYQNLRFPVDLSNPFAVATVLNQEPG--KLKIKELREVLDQGTEIS 64
+P + +++ + Q L V+LS+ AT L ++ K+ + EL+ L Q T++
Sbjct: 3108 KPSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKSELAQ-TKLE 3166
Query: 65 KTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELTEEWQKACAKYKLDR 124
+K K + E+++ +VHL D ++ + KK +W K KL R
Sbjct: 3167 LETTLKAQHKHLKELEAFRLEVKDKTD-EVHLLNDTLASEQKKSRELQWALEKEKAKLGR 3225
Query: 125 GDPILDEEFQRLKTEVSHKR 144
+ EE + LK + ++
Sbjct: 3226 SEERDKEELEDLKFSLESQK 3245
>gi|8922950 meiosis-specific nuclear structural 1 [Homo sapiens]
Length = 495
Score = 32.7 bits (73), Expect = 0.89
Identities = 35/201 (17%), Positives = 90/201 (44%), Gaps = 18/201 (8%)
Query: 23 QNLRFPVDLSNPFAVATVLNQEPGKLKIKELREVLDQGTEISKTRQMKEALFEQKVRQDI 82
QN +F +D+ A +E +LK +L++ E++K + E+L ++K+RQ +
Sbjct: 61 QNEQFELDMEEAIQKA----EENKRLKELQLKQEEKLAMELAKLKH--ESLKDEKMRQQV 114
Query: 83 HEEMENHLKWQVHLGKDPMSFKLKKELTEEWQKACAKYKLDRGDPILDEEFQRLKTEVSH 142
EN ++ + K ++ K+ + +K KY+ + D + + H
Sbjct: 115 R---ENSIELRELEKKLKAAYMNKERAAQIAEKDAIKYEQMKRDAEIAKTMME-----EH 166
Query: 143 KRVVRN----QEEKIKEFHPTFDPLINNTWLSRSRAQKRFQQVARKVMIQGRLFNMLSAV 198
KR+++ ++++ K + L + Q+ ++Q+ ++ ++ + +
Sbjct: 167 KRIIKEENAAEDKRNKAKAQYYLDLEKQLEEQEKKKQEAYEQLLKEKLMIDEIVRKIYEE 226
Query: 199 REMDKESILRKIGQAKQSIAQ 219
+++K+ L K+ ++ I +
Sbjct: 227 DQLEKQQKLEKMNAMRRYIEE 247
>gi|148839339 nexilin (F actin binding protein) [Homo sapiens]
Length = 675
Score = 32.7 bits (73), Expect = 0.89
Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 19/185 (10%)
Query: 45 PGKLKIKELREVLDQGTEISKTRQMKEA---------LFEQKVRQDIHEEMENHLKWQVH 95
PGKLK+ E+ Q E K + +EA FE+ RQ ++E+ EN ++
Sbjct: 244 PGKLKLT-FEELERQRQENRKKQAEEEARKRLEEEKRAFEEARRQMVNEDEENQDTAKIF 302
Query: 96 LGKDPMSFKLKKELTEEWQKACAKYKLDRGDPILDEEFQRLKTEVSHKRVVRNQEEKIKE 155
G P KL E E ++ K K + EE ++ E VV +
Sbjct: 303 KGYRPGKLKLSFEEMERQRREDEKRKAEEEARRRIEEEKKAFAEARRNMVVDDDS----- 357
Query: 156 FHPTFDPLINNTWLSRSRAQKRFQQVARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQ 215
P I+ +L+ + + F+++ ++ M + + +++ E ++ Q +Q
Sbjct: 358 --PEMYKTISQEFLTPGKLEINFEELLKQKMEEEKRRTEEERKHKLEMEK--QEFEQLRQ 413
Query: 216 SIAQE 220
+ +E
Sbjct: 414 EMGEE 418
>gi|148806891 hypothetical protein LOC54906 [Homo sapiens]
Length = 2430
Score = 32.7 bits (73), Expect = 0.89
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 448 PSKMETTKSCDSFNSFMLP-----IDVPAILDALPEEDRLETVERELCEQNVEVMLTPEM 502
P++ ++S NS+ ++V LD L E + V +C+ +++TP+
Sbjct: 248 PAEKCPSESLTQLNSYFSDPSAYILEVSTALDLLAEHPQSPCVSDGICDAGFSLVMTPD- 306
Query: 503 IKVEFPMLNYKDIRKEKEVKDQAQPAEKAGEKL--LEEMRNLR 543
EF +++ ++RKE E K ++ KA +++ L NLR
Sbjct: 307 --PEF-LVSEAEVRKETETKKDSEEMLKAKKRVFPLSPASNLR 346
>gi|222537750 ankyrin repeat domain 30B [Homo sapiens]
Length = 1392
Score = 32.3 bits (72), Expect = 1.2
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 472 ILDALPEEDRLETVERELCEQNVEVMLTPEMIKVEFPMLNYKDIRKEKEVKDQAQPAEKA 531
ILDALP +R ++++ CEQ M E K +F +L K++ + KE+K Q + +
Sbjct: 949 ILDALPSCERGRELKKDNCEQITAKM---EQTKNKFCVLQ-KELSEAKEIKSQLENQKAK 1004
Query: 532 GEKLLEEMR 540
E+ L +R
Sbjct: 1005 WEQELCSVR 1013
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 32.3 bits (72), Expect = 1.2
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 32/165 (19%)
Query: 17 VKEIEYQNLRFPVDLSNPFAVATVLNQEPGKLKIKELREVLDQGTEISKTRQMKEALFEQ 76
++E E + ++F D ++ + Q+ +L +E R+ L+ + I + + K +L EQ
Sbjct: 1296 LEEAEKKGIKFAKDAASLESQL----QDTQELLQEETRQKLNLSSRIRQLEEEKNSLQEQ 1351
Query: 77 KVRQDIHEEMENHLKWQV----------------HLGKDPMSFKLKKELTEEWQ------ 114
Q+ EE +L+ QV LG + KK+L ++ +
Sbjct: 1352 ---QEEEEEARKNLEKQVLALQSQLADTKKKVDDDLGTIESLEEAKKKLLKDAEALSQRL 1408
Query: 115 --KACAKYKLDRGDPILDEEFQRLKTEVSHKRVVR-NQEEKIKEF 156
KA A KL++ L +E L ++ H+R V N E+K K+F
Sbjct: 1409 EEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQKKF 1453
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 32.0 bits (71), Expect = 1.5
Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 35/224 (15%)
Query: 49 KIKELREVLDQGTEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKE 108
K++E + + DQ + Q + L ++ +D+ E+ME ++ + K +E
Sbjct: 696 KMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQMEKCIQ------EKDEKLKTVEE 749
Query: 109 LTEEW--QKACAKYKLD---RGDPILDEEFQRLKTEVSH-----------KRVVRNQEEK 152
L E Q A + +L+ + L +E Q LK + + K+V+ ++ K
Sbjct: 750 LLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGK 809
Query: 153 IKEFHPTFDPLINNTWLSRSRAQKRFQ-QVARKV-----MIQGR--LFNMLSAVREMDKE 204
IK + + L+ L + +K Q + KV +++G+ N + AV E +KE
Sbjct: 810 IK----SVEELLEAELLKVANKEKTVQLSITSKVQELQNLLKGKEEQMNTMKAVLE-EKE 864
Query: 205 SILRKIGQAKQSIAQEANFFKFFLRRISQDDYTSRFSVSPKEVL 248
L G+ Q + +E K ++ ++Q + S S E L
Sbjct: 865 KDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEASSASQFEEL 908
>gi|238908495 similar to pleckstrin homology domain protein (5V327)
[Homo sapiens]
Length = 506
Score = 32.0 bits (71), Expect = 1.5
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 41/180 (22%)
Query: 51 KELREVLDQGTEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKD-PMSFKLKKEL 109
KELR + + S + ++E E+K ++ EE ENHL+ + + P S L L
Sbjct: 234 KELRHLTE-----SLQQTLEELSIEKKKTLEMLEENENHLQTLANQSEQPPPSGGLHSNL 288
Query: 110 TEEWQKACAKYKLDRGDPILDEEFQRLKTE--VSHKRVVRNQE-----EKIKEFHPTFDP 162
+ ++E+ Q+L E ++ KR+ N+E E+ +EF+ +
Sbjct: 289 RQ-----------------IEEKMQQLLEEKLLAEKRMKENEERSRALEEEREFYSSQSQ 331
Query: 163 LINNTWLSRSRAQKRFQQVARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEAN 222
+ N+ L A+K QQ R++ + ++ MD E LR+ A +S+ Q N
Sbjct: 332 ALQNS-LQELTAEK--QQAERELKAEVKV--------RMDLERRLREAEGALRSLEQGLN 380
>gi|46852174 kinesin family member 3A [Homo sapiens]
Length = 699
Score = 32.0 bits (71), Expect = 1.5
Identities = 20/104 (19%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 51 KELREVLDQGTEISKTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELT 110
+E+ +L+ ++S+ +++ + + + +D E +EN++ W +G
Sbjct: 569 REIEGLLENIRQLSRELRLQMLIIDNFIPRDYQEMIENYVHWNEDIG------------- 615
Query: 111 EEWQKACAKY---KLDRGDPILD-EEFQRLKTEVSHKRVVRNQE 150
EWQ C Y + + P+ D +E + ++SH + +E
Sbjct: 616 -EWQLKCVAYTGNNMRKQTPVPDKKEKDPFEVDLSHVYLAYTEE 658
>gi|45439327 periplakin [Homo sapiens]
Length = 1756
Score = 32.0 bits (71), Expect = 1.5
Identities = 48/236 (20%), Positives = 103/236 (43%), Gaps = 28/236 (11%)
Query: 16 KVKEIEYQNLRFPVDLSNPFAVATVLNQEPGKLKIKEL--REVLDQGTEISKTRQMKEAL 73
+VKE+ + +++ D + + + K ++ E E+ EI + K +
Sbjct: 1227 EVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQV 1286
Query: 74 FEQKVRQDIHEEMEN-HLKWQVHLGKDPMSFKLKKELTEEWQKACAKYKLDRGDPILDEE 132
++V Q+I + E+ K +V + +S + KK++ E ++A + ++ R + EE
Sbjct: 1287 QTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKE----EE 1342
Query: 133 FQRLKTEVSHKRVVRNQEE-----KIKEFHPTFDPLINNTWLSRSRAQKRFQQVARKVMI 187
R+K V + VVR +EE + F + D + + + RA+ R +
Sbjct: 1343 LSRVKERVVQQEVVRYEEEPGLRAEASAFAESID--VELRQIDKLRAELR--------RL 1392
Query: 188 QGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFFLRRISQDDYTSRFSVS 243
Q R + + E+++E QA++ +E + L + Q++ +R V+
Sbjct: 1393 QRRRTELERQLEELERER------QARREAEREVQRLQQRLAALEQEEAEAREKVT 1442
>gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo
sapiens]
Length = 1591
Score = 31.6 bits (70), Expect = 2.0
Identities = 43/208 (20%), Positives = 90/208 (43%), Gaps = 26/208 (12%)
Query: 47 KLKIKELREVLDQGTEISKTRQMKEALFEQK------VRQDIHEEMENHLKWQVHLGKDP 100
K +I EL+ LD +E+S + K+ Q+ + Q++ ++ + + Q ++
Sbjct: 1173 KEQIIELQSKLD--SELSALERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQ-DREQ 1229
Query: 101 MSFKLKKELTEEWQKACAKYKLDRG--DPILDEEFQRLKTEVSHK-----------RVVR 147
+ KL E E Q A ++KL+R + L E+ + L+ +++ +V
Sbjct: 1230 LIQKLNCEKDEAIQTALKEFKLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVA 1289
Query: 148 NQEEKIKEFHPTFDPLINNTWLSRSRAQKRFQQVARKVMIQGRL-FNMLSAVREMDKESI 206
+EK++E F + R + Q V ++ + + FN + +M KE+I
Sbjct: 1290 ELQEKLQEEKAKFLEQLEE---QEKRKNEEMQNVRTSLIAEQQTNFNTVLTREKMRKENI 1346
Query: 207 LRKIGQAKQSIAQEANFFKFFLRRISQD 234
+ + +S Q+ K + +S+D
Sbjct: 1347 INDLSDKLKSTMQQQERDKDLIESLSED 1374
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,424,640
Number of Sequences: 37866
Number of extensions: 969811
Number of successful extensions: 3371
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 3307
Number of HSP's gapped (non-prelim): 157
length of query: 554
length of database: 18,247,518
effective HSP length: 107
effective length of query: 447
effective length of database: 14,195,856
effective search space: 6345547632
effective search space used: 6345547632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.